Chromosome-level genome assembly of the freshwater snail Bellamya purificata (Caenogastropoda)
To date, most cultured freshwater snails are sourced from slow-growing wild populations. [...]to promote the development of snail aquaculture, freshwater snail breeding programs, especially for B. purificata, have become a priority. [...]generation sequencing technologies can expand sequencing reads...
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| Veröffentlicht in: | Dōngwùxué yánjiū 2022-07, Vol.43 (4), p.683-686 |
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| creator | Jin, Wu Cao, Xiao-Juan Ma, Xue-Yan Lv, Guo-Hua Xu, Gang-Chun Xu, Pao Sun, Bing Xu, Dong-Po Wen, Hai-Bo |
| description | To date, most cultured freshwater snails are sourced from slow-growing wild populations. [...]to promote the development of snail aquaculture, freshwater snail breeding programs, especially for B. purificata, have become a priority. [...]generation sequencing technologies can expand sequencing reads and provide superior platforms to produce complete and high-quality genomes. Comparison of the B. purificata genome with that of eight other mollusk species (Pomacea canaliculata, Gastropoda; Biomphalaria glabrata, Gastropoda; A. fulica, Gastropoda; Crassostrea gigas, Bivalvia; Lingula anatina, Lingulata; Lottia gigantea, Gastropoda; Mytilus galloprovincialis, Bivalvia; Patinopecten yessoensis, Bivalvia) revealed 8 943 gene families and 990 single-copy genes. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of the positively selected genes showed enrichment in G proteincoupled protein receptor activity, acetylcholine receptor activity, and taste transduction function (Figure 1F, G). |
| doi_str_mv | 10.24272/j.issn.2095-8137.2022.118 |
| format | Article |
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[...]to promote the development of snail aquaculture, freshwater snail breeding programs, especially for B. purificata, have become a priority. [...]generation sequencing technologies can expand sequencing reads and provide superior platforms to produce complete and high-quality genomes. Comparison of the B. purificata genome with that of eight other mollusk species (Pomacea canaliculata, Gastropoda; Biomphalaria glabrata, Gastropoda; A. fulica, Gastropoda; Crassostrea gigas, Bivalvia; Lingula anatina, Lingulata; Lottia gigantea, Gastropoda; Mytilus galloprovincialis, Bivalvia; Patinopecten yessoensis, Bivalvia) revealed 8 943 gene families and 990 single-copy genes. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of the positively selected genes showed enrichment in G proteincoupled protein receptor activity, acetylcholine receptor activity, and taste transduction function (Figure 1F, G).</description><identifier>ISSN: 2095-8137</identifier><identifier>ISSN: 0254-5853</identifier><identifier>DOI: 10.24272/j.issn.2095-8137.2022.118</identifier><identifier>PMID: 35838037</identifier><language>eng</language><publisher>China: Kunming Institute of Zoology, The Chinese Academy of Sciences</publisher><subject>Animals ; Aquaculture ; Bivalvia ; Breeding ; Chromosomes ; Encyclopaedias ; Encyclopedias ; Fresh Water ; Freshwater ; Freshwater molluscs ; Gastropoda ; Gene families ; Genes ; Genomes ; Inland water environment ; Letter to the Editor ; Marine molluscs ; Mollusks ; Neurotransmitters ; Oysters ; Phylogenetics ; Polyculture (aquaculture) ; Proteins ; Receptors ; Sequencing ; Snails ; Snails - genetics ; Taste transduction ; Transduction ; Waterfowl ; Work platforms</subject><ispartof>Dōngwùxué yánjiū, 2022-07, Vol.43 (4), p.683-686</ispartof><rights>Copyright Kunming Institute of Zoology, The Chinese Academy of Sciences Jul 2022</rights><rights>Editorial Office of Zoological Research, Kunming Institute of Zoology, Chinese Academy of Sciences 2022 Editorial Office of Zoological Research, Kunming Institute of Zoology, Chinese Academy of Sciences</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c454t-ed6b4499e9738ef14339b35a95051aa067a48af19b77f8ef2de3dea2b37252b03</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,885,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35838037$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Jin, Wu</creatorcontrib><creatorcontrib>Cao, Xiao-Juan</creatorcontrib><creatorcontrib>Ma, Xue-Yan</creatorcontrib><creatorcontrib>Lv, Guo-Hua</creatorcontrib><creatorcontrib>Xu, Gang-Chun</creatorcontrib><creatorcontrib>Xu, Pao</creatorcontrib><creatorcontrib>Sun, Bing</creatorcontrib><creatorcontrib>Xu, Dong-Po</creatorcontrib><creatorcontrib>Wen, Hai-Bo</creatorcontrib><creatorcontrib>中国水产科学研究院淡水渔业研究中心, 农业农村部稻渔综合种养生态重点实验室, 江苏 无锡 214081, 中国</creatorcontrib><creatorcontrib>南京农业大学无锡渔业学院, 江苏 无锡214128, 中国</creatorcontrib><creatorcontrib>华中农业大学水产学院长江经济带大宗水生生物产业绿色发展教育部工程研究中心, 湖北 武汉430070, 中国</creatorcontrib><creatorcontrib>Key Laboratory of Integrated Rice-Fish Farming Ecology, Ministry of Agriculture and Rural Affairs, Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi, Jiangsu 214081, China</creatorcontrib><creatorcontrib>Wuxi Fisheries College, Nanjing Agricultural University, Wuxi, Jiangsu 214128, China</creatorcontrib><creatorcontrib>College of Fisheries, Engineering Research Center of Green Development for Conventional Aquatic Biological Industry in the Yangtze River Economic Belt, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China</creatorcontrib><title>Chromosome-level genome assembly of the freshwater snail Bellamya purificata (Caenogastropoda)</title><title>Dōngwùxué yánjiū</title><addtitle>Zool Res</addtitle><description>To date, most cultured freshwater snails are sourced from slow-growing wild populations. [...]to promote the development of snail aquaculture, freshwater snail breeding programs, especially for B. purificata, have become a priority. [...]generation sequencing technologies can expand sequencing reads and provide superior platforms to produce complete and high-quality genomes. Comparison of the B. purificata genome with that of eight other mollusk species (Pomacea canaliculata, Gastropoda; Biomphalaria glabrata, Gastropoda; A. fulica, Gastropoda; Crassostrea gigas, Bivalvia; Lingula anatina, Lingulata; Lottia gigantea, Gastropoda; Mytilus galloprovincialis, Bivalvia; Patinopecten yessoensis, Bivalvia) revealed 8 943 gene families and 990 single-copy genes. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of the positively selected genes showed enrichment in G proteincoupled protein receptor activity, acetylcholine receptor activity, and taste transduction function (Figure 1F, G).</description><subject>Animals</subject><subject>Aquaculture</subject><subject>Bivalvia</subject><subject>Breeding</subject><subject>Chromosomes</subject><subject>Encyclopaedias</subject><subject>Encyclopedias</subject><subject>Fresh Water</subject><subject>Freshwater</subject><subject>Freshwater molluscs</subject><subject>Gastropoda</subject><subject>Gene families</subject><subject>Genes</subject><subject>Genomes</subject><subject>Inland water environment</subject><subject>Letter to the Editor</subject><subject>Marine molluscs</subject><subject>Mollusks</subject><subject>Neurotransmitters</subject><subject>Oysters</subject><subject>Phylogenetics</subject><subject>Polyculture (aquaculture)</subject><subject>Proteins</subject><subject>Receptors</subject><subject>Sequencing</subject><subject>Snails</subject><subject>Snails - genetics</subject><subject>Taste transduction</subject><subject>Transduction</subject><subject>Waterfowl</subject><subject>Work platforms</subject><issn>2095-8137</issn><issn>0254-5853</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNpdkU1P3DAQhn2gKgj4C8iCCz1k8UdixxwqtStoKyH1Uq5Yk2Sy61USL3ZCtf8eh48V7cnj8Tuv5vVDyDlnC5ELLa42CxfjsBDMFFnJpU6VEAvOywNytG8ektMYXcWKVDPB1WdyKItSlkzqI_KwXAff--h7zDp8wo6ucEgXCjFiX3U76ls6rpG2AeP6L4wYaBzAdfQ7dh30O6DbKbjW1TACvVxCml5BHIPf-ga-nJBPLXQRT9_OY3J_e_Nn-TO7-_3j1_LbXVbnRT5m2Kgqz41Bo2WJLc-lNJUswBRpawCmNOQltNxUWrdJIBqUDYKopBaFqJg8Jl9ffbdT1WNT4zAG6Ow2uB7Cznpw9t-Xwa3tyj9ZI6XKlUgGl28GwT9OGEfbu1jPEQf0U7RCGc4KrZVK0ov_pBs_hSHFs0LzUpXp02fV9auqDj7GgO1-Gc7sCz27sTM9O4OyMyg707OJXho--xhnP_rOTT4DoGCbtA</recordid><startdate>20220718</startdate><enddate>20220718</enddate><creator>Jin, Wu</creator><creator>Cao, Xiao-Juan</creator><creator>Ma, Xue-Yan</creator><creator>Lv, Guo-Hua</creator><creator>Xu, Gang-Chun</creator><creator>Xu, Pao</creator><creator>Sun, Bing</creator><creator>Xu, Dong-Po</creator><creator>Wen, Hai-Bo</creator><general>Kunming Institute of Zoology, The Chinese Academy of Sciences</general><general>Science Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>BVBZV</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F1W</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H95</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>L.G</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20220718</creationdate><title>Chromosome-level genome assembly of the freshwater snail Bellamya purificata (Caenogastropoda)</title><author>Jin, Wu ; Cao, Xiao-Juan ; Ma, Xue-Yan ; Lv, Guo-Hua ; Xu, Gang-Chun ; Xu, Pao ; Sun, Bing ; Xu, Dong-Po ; Wen, Hai-Bo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c454t-ed6b4499e9738ef14339b35a95051aa067a48af19b77f8ef2de3dea2b37252b03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Animals</topic><topic>Aquaculture</topic><topic>Bivalvia</topic><topic>Breeding</topic><topic>Chromosomes</topic><topic>Encyclopaedias</topic><topic>Encyclopedias</topic><topic>Fresh Water</topic><topic>Freshwater</topic><topic>Freshwater molluscs</topic><topic>Gastropoda</topic><topic>Gene families</topic><topic>Genes</topic><topic>Genomes</topic><topic>Inland water environment</topic><topic>Letter to the Editor</topic><topic>Marine molluscs</topic><topic>Mollusks</topic><topic>Neurotransmitters</topic><topic>Oysters</topic><topic>Phylogenetics</topic><topic>Polyculture (aquaculture)</topic><topic>Proteins</topic><topic>Receptors</topic><topic>Sequencing</topic><topic>Snails</topic><topic>Snails - genetics</topic><topic>Taste transduction</topic><topic>Transduction</topic><topic>Waterfowl</topic><topic>Work platforms</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jin, Wu</creatorcontrib><creatorcontrib>Cao, Xiao-Juan</creatorcontrib><creatorcontrib>Ma, Xue-Yan</creatorcontrib><creatorcontrib>Lv, Guo-Hua</creatorcontrib><creatorcontrib>Xu, Gang-Chun</creatorcontrib><creatorcontrib>Xu, Pao</creatorcontrib><creatorcontrib>Sun, Bing</creatorcontrib><creatorcontrib>Xu, Dong-Po</creatorcontrib><creatorcontrib>Wen, Hai-Bo</creatorcontrib><creatorcontrib>中国水产科学研究院淡水渔业研究中心, 农业农村部稻渔综合种养生态重点实验室, 江苏 无锡 214081, 中国</creatorcontrib><creatorcontrib>南京农业大学无锡渔业学院, 江苏 无锡214128, 中国</creatorcontrib><creatorcontrib>华中农业大学水产学院长江经济带大宗水生生物产业绿色发展教育部工程研究中心, 湖北 武汉430070, 中国</creatorcontrib><creatorcontrib>Key Laboratory of Integrated Rice-Fish Farming Ecology, Ministry of Agriculture and Rural Affairs, Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi, Jiangsu 214081, China</creatorcontrib><creatorcontrib>Wuxi Fisheries College, Nanjing Agricultural University, Wuxi, Jiangsu 214128, China</creatorcontrib><creatorcontrib>College of Fisheries, Engineering Research Center of Green Development for Conventional Aquatic Biological Industry in the Yangtze River Economic Belt, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>East & South Asia Database</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Environmental Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Environmental Science Collection</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Dōngwùxué yánjiū</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jin, Wu</au><au>Cao, Xiao-Juan</au><au>Ma, Xue-Yan</au><au>Lv, Guo-Hua</au><au>Xu, Gang-Chun</au><au>Xu, Pao</au><au>Sun, Bing</au><au>Xu, Dong-Po</au><au>Wen, Hai-Bo</au><aucorp>中国水产科学研究院淡水渔业研究中心, 农业农村部稻渔综合种养生态重点实验室, 江苏 无锡 214081, 中国</aucorp><aucorp>南京农业大学无锡渔业学院, 江苏 无锡214128, 中国</aucorp><aucorp>华中农业大学水产学院长江经济带大宗水生生物产业绿色发展教育部工程研究中心, 湖北 武汉430070, 中国</aucorp><aucorp>Key Laboratory of Integrated Rice-Fish Farming Ecology, Ministry of Agriculture and Rural Affairs, Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi, Jiangsu 214081, China</aucorp><aucorp>Wuxi Fisheries College, Nanjing Agricultural University, Wuxi, Jiangsu 214128, China</aucorp><aucorp>College of Fisheries, Engineering Research Center of Green Development for Conventional Aquatic Biological Industry in the Yangtze River Economic Belt, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Chromosome-level genome assembly of the freshwater snail Bellamya purificata (Caenogastropoda)</atitle><jtitle>Dōngwùxué yánjiū</jtitle><addtitle>Zool Res</addtitle><date>2022-07-18</date><risdate>2022</risdate><volume>43</volume><issue>4</issue><spage>683</spage><epage>686</epage><pages>683-686</pages><issn>2095-8137</issn><issn>0254-5853</issn><abstract>To date, most cultured freshwater snails are sourced from slow-growing wild populations. [...]to promote the development of snail aquaculture, freshwater snail breeding programs, especially for B. purificata, have become a priority. [...]generation sequencing technologies can expand sequencing reads and provide superior platforms to produce complete and high-quality genomes. Comparison of the B. purificata genome with that of eight other mollusk species (Pomacea canaliculata, Gastropoda; Biomphalaria glabrata, Gastropoda; A. fulica, Gastropoda; Crassostrea gigas, Bivalvia; Lingula anatina, Lingulata; Lottia gigantea, Gastropoda; Mytilus galloprovincialis, Bivalvia; Patinopecten yessoensis, Bivalvia) revealed 8 943 gene families and 990 single-copy genes. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of the positively selected genes showed enrichment in G proteincoupled protein receptor activity, acetylcholine receptor activity, and taste transduction function (Figure 1F, G).</abstract><cop>China</cop><pub>Kunming Institute of Zoology, The Chinese Academy of Sciences</pub><pmid>35838037</pmid><doi>10.24272/j.issn.2095-8137.2022.118</doi><tpages>4</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 2095-8137 |
| ispartof | Dōngwùxué yánjiū, 2022-07, Vol.43 (4), p.683-686 |
| issn | 2095-8137 0254-5853 |
| language | eng |
| recordid | cdi_proquest_journals_2718688136 |
| source | MEDLINE; EZB-FREE-00999 freely available EZB journals; PubMed Central |
| subjects | Animals Aquaculture Bivalvia Breeding Chromosomes Encyclopaedias Encyclopedias Fresh Water Freshwater Freshwater molluscs Gastropoda Gene families Genes Genomes Inland water environment Letter to the Editor Marine molluscs Mollusks Neurotransmitters Oysters Phylogenetics Polyculture (aquaculture) Proteins Receptors Sequencing Snails Snails - genetics Taste transduction Transduction Waterfowl Work platforms |
| title | Chromosome-level genome assembly of the freshwater snail Bellamya purificata (Caenogastropoda) |
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