Genome-based reclassification of Anoxybacilluskamchatkensis Kevbrin et al. 2005 as a later heterotypic synonym of Anoxybacillusayderensis Dulger et al. 2004
In this study, we aimed to clarify the taxonomic positions of Anoxybacillus kamchatkensis DSM 14988 T and Anoxybacillus ayderensis AB04 T using whole-genome phylogenetic analysis, biochemical and chemotaxonomic characteristics. In phylogenetic trees drawn using whole-genome sequences and 16S rRNA ge...
Gespeichert in:
| Veröffentlicht in: | Archives of microbiology 2022-10, Vol.204 (10) |
|---|---|
| Hauptverfasser: | , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | |
|---|---|
| container_issue | 10 |
| container_start_page | |
| container_title | Archives of microbiology |
| container_volume | 204 |
| creator | Inan Bektas, Kadriye Nalcaoglu, Aleyna Guler, Halil İbrahim Canakcı, Sabriye Belduz, Ali Osman |
| description | In this study, we aimed to clarify the taxonomic positions of
Anoxybacillus
kamchatkensis
DSM 14988
T
and
Anoxybacillus
ayderensis
AB04
T
using whole-genome phylogenetic analysis, biochemical and chemotaxonomic characteristics. In phylogenetic trees drawn using whole-genome sequences and 16S rRNA gene sequences,
A
.
kamchatkensis
DSM 14988
T
and
A
.
ayderensis
AB04
T
clade together and showed high sequence similarity (99.6%) based on 16S rRNA gene. The average amino acid identity, average nucleotide identity and digital DNA–DNA hybridization values between
A
.
kamchatkensis
DSM 14988
T
and
A
.
ayderensis
AB04
T
were found to be greater than the threshold values for species demarcation. Most phenotypic and chemotaxonomic features between both species were almost identical except for a few exceptions. The present results show that
A
.
kamchatkensis
DSM 14988
T
is a later heterotypic synonym of
A
.
ayderensis
AB04
T
. |
| doi_str_mv | 10.1007/s00203-022-03201-4 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_sprin</sourceid><recordid>TN_cdi_proquest_journals_2712349152</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2712349152</sourcerecordid><originalsourceid>FETCH-LOGICAL-p157t-753d9fd9b63b8053b09ee7d497f773b1fbc72f4efb1538c1952435d11c5361053</originalsourceid><addsrcrecordid>eNplkcFOwzAMhiMEEmPwApwicc5w4mZpj9OAgZjEBSRuVdKmrFvXlKZF9F14WAJF2oGLLUv__9nWT8glhxkHUNceQAAyEIIBCuAsOiITHmEYlXg9JhNAECxOEE_JmfdbAC7iOJ6Qr5Wt3d4yo73NaWuzSntfFmWmu9LV1BV0UbvPweisrKre7_Q-2-huZ2tfevpoP0xb1tR2VFczKgAk1Z5qWunOtnRjQ3Xd0JQZ9UPt6mH_D6iH3LYj7aav3oLrAIvOyUmhK28v_vqUvNzdPi_v2fpp9bBcrFnDpeqYkpgnRZ6YOZoYJBpIrFV5lKhCKTS8MJkSRWQLwyXGGU-kiFDmnGcS5zwYpuRq5Date--t79Kt69s6rEyF4gKjhEsRVDiqfBOeDqceVBzSnxjSMYY0xJD-xpBG-A3V2Hwo</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2712349152</pqid></control><display><type>article</type><title>Genome-based reclassification of Anoxybacilluskamchatkensis Kevbrin et al. 2005 as a later heterotypic synonym of Anoxybacillusayderensis Dulger et al. 2004</title><source>SpringerLink Journals - AutoHoldings</source><creator>Inan Bektas, Kadriye ; Nalcaoglu, Aleyna ; Guler, Halil İbrahim ; Canakcı, Sabriye ; Belduz, Ali Osman</creator><creatorcontrib>Inan Bektas, Kadriye ; Nalcaoglu, Aleyna ; Guler, Halil İbrahim ; Canakcı, Sabriye ; Belduz, Ali Osman</creatorcontrib><description>In this study, we aimed to clarify the taxonomic positions of
Anoxybacillus
kamchatkensis
DSM 14988
T
and
Anoxybacillus
ayderensis
AB04
T
using whole-genome phylogenetic analysis, biochemical and chemotaxonomic characteristics. In phylogenetic trees drawn using whole-genome sequences and 16S rRNA gene sequences,
A
.
kamchatkensis
DSM 14988
T
and
A
.
ayderensis
AB04
T
clade together and showed high sequence similarity (99.6%) based on 16S rRNA gene. The average amino acid identity, average nucleotide identity and digital DNA–DNA hybridization values between
A
.
kamchatkensis
DSM 14988
T
and
A
.
ayderensis
AB04
T
were found to be greater than the threshold values for species demarcation. Most phenotypic and chemotaxonomic features between both species were almost identical except for a few exceptions. The present results show that
A
.
kamchatkensis
DSM 14988
T
is a later heterotypic synonym of
A
.
ayderensis
AB04
T
.</description><identifier>ISSN: 0302-8933</identifier><identifier>EISSN: 1432-072X</identifier><identifier>DOI: 10.1007/s00203-022-03201-4</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Algorithms ; Amino acid sequence ; Amino acids ; Archives & records ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Cell Biology ; Chromatography ; Deoxyribonucleic acid ; DNA ; Ecology ; Gene sequencing ; Genomes ; Hybridization ; Life Sciences ; Lipids ; Microbial Ecology ; Microbiology ; Nucleotides ; Original Paper ; Phylogenetics ; Phylogeny ; Reclassification ; rRNA 16S ; Taxonomy ; Trees</subject><ispartof>Archives of microbiology, 2022-10, Vol.204 (10)</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2022. Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00203-022-03201-4$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00203-022-03201-4$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27903,27904,41466,42535,51296</link.rule.ids></links><search><creatorcontrib>Inan Bektas, Kadriye</creatorcontrib><creatorcontrib>Nalcaoglu, Aleyna</creatorcontrib><creatorcontrib>Guler, Halil İbrahim</creatorcontrib><creatorcontrib>Canakcı, Sabriye</creatorcontrib><creatorcontrib>Belduz, Ali Osman</creatorcontrib><title>Genome-based reclassification of Anoxybacilluskamchatkensis Kevbrin et al. 2005 as a later heterotypic synonym of Anoxybacillusayderensis Dulger et al. 2004</title><title>Archives of microbiology</title><addtitle>Arch Microbiol</addtitle><description>In this study, we aimed to clarify the taxonomic positions of
Anoxybacillus
kamchatkensis
DSM 14988
T
and
Anoxybacillus
ayderensis
AB04
T
using whole-genome phylogenetic analysis, biochemical and chemotaxonomic characteristics. In phylogenetic trees drawn using whole-genome sequences and 16S rRNA gene sequences,
A
.
kamchatkensis
DSM 14988
T
and
A
.
ayderensis
AB04
T
clade together and showed high sequence similarity (99.6%) based on 16S rRNA gene. The average amino acid identity, average nucleotide identity and digital DNA–DNA hybridization values between
A
.
kamchatkensis
DSM 14988
T
and
A
.
ayderensis
AB04
T
were found to be greater than the threshold values for species demarcation. Most phenotypic and chemotaxonomic features between both species were almost identical except for a few exceptions. The present results show that
A
.
kamchatkensis
DSM 14988
T
is a later heterotypic synonym of
A
.
ayderensis
AB04
T
.</description><subject>Algorithms</subject><subject>Amino acid sequence</subject><subject>Amino acids</subject><subject>Archives & records</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Cell Biology</subject><subject>Chromatography</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Ecology</subject><subject>Gene sequencing</subject><subject>Genomes</subject><subject>Hybridization</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Microbial Ecology</subject><subject>Microbiology</subject><subject>Nucleotides</subject><subject>Original Paper</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Reclassification</subject><subject>rRNA 16S</subject><subject>Taxonomy</subject><subject>Trees</subject><issn>0302-8933</issn><issn>1432-072X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNplkcFOwzAMhiMEEmPwApwicc5w4mZpj9OAgZjEBSRuVdKmrFvXlKZF9F14WAJF2oGLLUv__9nWT8glhxkHUNceQAAyEIIBCuAsOiITHmEYlXg9JhNAECxOEE_JmfdbAC7iOJ6Qr5Wt3d4yo73NaWuzSntfFmWmu9LV1BV0UbvPweisrKre7_Q-2-huZ2tfevpoP0xb1tR2VFczKgAk1Z5qWunOtnRjQ3Xd0JQZ9UPt6mH_D6iH3LYj7aav3oLrAIvOyUmhK28v_vqUvNzdPi_v2fpp9bBcrFnDpeqYkpgnRZ6YOZoYJBpIrFV5lKhCKTS8MJkSRWQLwyXGGU-kiFDmnGcS5zwYpuRq5Date--t79Kt69s6rEyF4gKjhEsRVDiqfBOeDqceVBzSnxjSMYY0xJD-xpBG-A3V2Hwo</recordid><startdate>20221001</startdate><enddate>20221001</enddate><creator>Inan Bektas, Kadriye</creator><creator>Nalcaoglu, Aleyna</creator><creator>Guler, Halil İbrahim</creator><creator>Canakcı, Sabriye</creator><creator>Belduz, Ali Osman</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>3V.</scope><scope>7QL</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope></search><sort><creationdate>20221001</creationdate><title>Genome-based reclassification of Anoxybacilluskamchatkensis Kevbrin et al. 2005 as a later heterotypic synonym of Anoxybacillusayderensis Dulger et al. 2004</title><author>Inan Bektas, Kadriye ; Nalcaoglu, Aleyna ; Guler, Halil İbrahim ; Canakcı, Sabriye ; Belduz, Ali Osman</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p157t-753d9fd9b63b8053b09ee7d497f773b1fbc72f4efb1538c1952435d11c5361053</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Algorithms</topic><topic>Amino acid sequence</topic><topic>Amino acids</topic><topic>Archives & records</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Cell Biology</topic><topic>Chromatography</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Ecology</topic><topic>Gene sequencing</topic><topic>Genomes</topic><topic>Hybridization</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Microbial Ecology</topic><topic>Microbiology</topic><topic>Nucleotides</topic><topic>Original Paper</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Reclassification</topic><topic>rRNA 16S</topic><topic>Taxonomy</topic><topic>Trees</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Inan Bektas, Kadriye</creatorcontrib><creatorcontrib>Nalcaoglu, Aleyna</creatorcontrib><creatorcontrib>Guler, Halil İbrahim</creatorcontrib><creatorcontrib>Canakcı, Sabriye</creatorcontrib><creatorcontrib>Belduz, Ali Osman</creatorcontrib><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><jtitle>Archives of microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Inan Bektas, Kadriye</au><au>Nalcaoglu, Aleyna</au><au>Guler, Halil İbrahim</au><au>Canakcı, Sabriye</au><au>Belduz, Ali Osman</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-based reclassification of Anoxybacilluskamchatkensis Kevbrin et al. 2005 as a later heterotypic synonym of Anoxybacillusayderensis Dulger et al. 2004</atitle><jtitle>Archives of microbiology</jtitle><stitle>Arch Microbiol</stitle><date>2022-10-01</date><risdate>2022</risdate><volume>204</volume><issue>10</issue><issn>0302-8933</issn><eissn>1432-072X</eissn><abstract>In this study, we aimed to clarify the taxonomic positions of
Anoxybacillus
kamchatkensis
DSM 14988
T
and
Anoxybacillus
ayderensis
AB04
T
using whole-genome phylogenetic analysis, biochemical and chemotaxonomic characteristics. In phylogenetic trees drawn using whole-genome sequences and 16S rRNA gene sequences,
A
.
kamchatkensis
DSM 14988
T
and
A
.
ayderensis
AB04
T
clade together and showed high sequence similarity (99.6%) based on 16S rRNA gene. The average amino acid identity, average nucleotide identity and digital DNA–DNA hybridization values between
A
.
kamchatkensis
DSM 14988
T
and
A
.
ayderensis
AB04
T
were found to be greater than the threshold values for species demarcation. Most phenotypic and chemotaxonomic features between both species were almost identical except for a few exceptions. The present results show that
A
.
kamchatkensis
DSM 14988
T
is a later heterotypic synonym of
A
.
ayderensis
AB04
T
.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><doi>10.1007/s00203-022-03201-4</doi></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0302-8933 |
| ispartof | Archives of microbiology, 2022-10, Vol.204 (10) |
| issn | 0302-8933 1432-072X |
| language | eng |
| recordid | cdi_proquest_journals_2712349152 |
| source | SpringerLink Journals - AutoHoldings |
| subjects | Algorithms Amino acid sequence Amino acids Archives & records Biochemistry Biomedical and Life Sciences Biotechnology Cell Biology Chromatography Deoxyribonucleic acid DNA Ecology Gene sequencing Genomes Hybridization Life Sciences Lipids Microbial Ecology Microbiology Nucleotides Original Paper Phylogenetics Phylogeny Reclassification rRNA 16S Taxonomy Trees |
| title | Genome-based reclassification of Anoxybacilluskamchatkensis Kevbrin et al. 2005 as a later heterotypic synonym of Anoxybacillusayderensis Dulger et al. 2004 |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-28T07%3A56%3A05IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_sprin&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Genome-based%20reclassification%20of%20Anoxybacilluskamchatkensis%20Kevbrin%20et%20al.%202005%20as%20a%20later%20heterotypic%20synonym%20of%20Anoxybacillusayderensis%20Dulger%20et%20al.%202004&rft.jtitle=Archives%20of%20microbiology&rft.au=Inan%20Bektas,%20Kadriye&rft.date=2022-10-01&rft.volume=204&rft.issue=10&rft.issn=0302-8933&rft.eissn=1432-072X&rft_id=info:doi/10.1007/s00203-022-03201-4&rft_dat=%3Cproquest_sprin%3E2712349152%3C/proquest_sprin%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2712349152&rft_id=info:pmid/&rfr_iscdi=true |