Habitat association constrains population history in two sympatric ovenbirds along Amazonian floodplains

Aim Amazonian floodplains include distinct types of seasonally flooded habitats, determined by the flooding regime and sedimentation dynamics. Some bird species prefer specific habitat types within the floodplains. To investigate whether distinct habitats are differentially affected by geologic and...

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Veröffentlicht in:Journal of biogeography 2022-09, Vol.49 (9), p.1683-1695
Hauptverfasser: Barbosa, Waleska, Ferreira, Mateus, Schultz, Eduardo, Willians Luna, Leilton, Orsi Laranjeiras, Thiago, Aleixo, Alexandre, Ribas, Camila
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container_end_page 1695
container_issue 9
container_start_page 1683
container_title Journal of biogeography
container_volume 49
creator Barbosa, Waleska
Ferreira, Mateus
Schultz, Eduardo
Willians Luna, Leilton
Orsi Laranjeiras, Thiago
Aleixo, Alexandre
Ribas, Camila
description Aim Amazonian floodplains include distinct types of seasonally flooded habitats, determined by the flooding regime and sedimentation dynamics. Some bird species prefer specific habitat types within the floodplains. To investigate whether distinct habitats are differentially affected by geologic and climatic history, we compare population history in a sympatric and closely related pair of ovenbird species with different habitat associations. Location Amazonian floodplains. Taxa Synallaxis albigularis and Mazaria propinqua (Aves; Furnariidae). Methods Occurrence records were obtained from museums and public databases. Genomic data included nuclear loci (UCE) and the mitogenome for 49 samples. SNPs from UCE data were used to infer population genetic structure and effective migration. Mitogenomes were used to build phylogenetic trees and chronograms. Both datasets were used to infer historical demographic changes and test demographic scenarios. Results S. albigularis includes geographically structured mtDNA clades with a crown age of 250 ka, whereas M. propinqua includes a single clade with a crown age of 38 ka. Effective migration is lower at the base of the Andes for S. albigularis and at the lower Negro River for M. propinqua. Population expansion is detected for both species during the Quaternary, but was steeper and more recent in M. propinqua. Main conclusions The differences in population histories relate to distinct habitat associations along Amazonian floodplains. Preference of M. propinqua for more ephemeral island habitats may favour local extinctions, leading to demographic change, low genetic variability, no population structure and smaller effective population size. In contrast, more resilient habitats along the floodplains inhabited by S. albigularis may sustain local populations, generating and maintaining local diversity. Our results suggest that climatic variations of the late Pleistocene and Holocene caused changes in distribution and connectivity of the different types of habitats along the Amazonian floodplains, affecting gene flow and population sizes of associated bird populations.
doi_str_mv 10.1111/jbi.14266
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Some bird species prefer specific habitat types within the floodplains. To investigate whether distinct habitats are differentially affected by geologic and climatic history, we compare population history in a sympatric and closely related pair of ovenbird species with different habitat associations. Location Amazonian floodplains. Taxa Synallaxis albigularis and Mazaria propinqua (Aves; Furnariidae). Methods Occurrence records were obtained from museums and public databases. Genomic data included nuclear loci (UCE) and the mitogenome for 49 samples. SNPs from UCE data were used to infer population genetic structure and effective migration. Mitogenomes were used to build phylogenetic trees and chronograms. Both datasets were used to infer historical demographic changes and test demographic scenarios. Results S. albigularis includes geographically structured mtDNA clades with a crown age of 250 ka, whereas M. propinqua includes a single clade with a crown age of 38 ka. Effective migration is lower at the base of the Andes for S. albigularis and at the lower Negro River for M. propinqua. Population expansion is detected for both species during the Quaternary, but was steeper and more recent in M. propinqua. Main conclusions The differences in population histories relate to distinct habitat associations along Amazonian floodplains. Preference of M. propinqua for more ephemeral island habitats may favour local extinctions, leading to demographic change, low genetic variability, no population structure and smaller effective population size. In contrast, more resilient habitats along the floodplains inhabited by S. albigularis may sustain local populations, generating and maintaining local diversity. Our results suggest that climatic variations of the late Pleistocene and Holocene caused changes in distribution and connectivity of the different types of habitats along the Amazonian floodplains, affecting gene flow and population sizes of associated bird populations.</description><identifier>ISSN: 0305-0270</identifier><identifier>EISSN: 1365-2699</identifier><identifier>DOI: 10.1111/jbi.14266</identifier><language>eng</language><publisher>Oxford: Wiley Subscription Services, Inc</publisher><subject>Bird populations ; Birds ; demographic history ; Demographics ; Demography ; Flooding ; Floodplains ; Floods ; fluvial dynamics ; Gene flow ; Genetic structure ; Genetic variability ; Habitats ; Holocene ; Local population ; Mitochondrial DNA ; Museums ; Phylogeny ; Pleistocene ; Population ; Population genetics ; Population growth ; Population number ; Population structure ; Populations ; Quaternary ; river islands ; Single-nucleotide polymorphism ; Species extinction ; Sympatric populations ; ultraconserved elements ; varzea</subject><ispartof>Journal of biogeography, 2022-09, Vol.49 (9), p.1683-1695</ispartof><rights>2021 John Wiley &amp; Sons Ltd</rights><rights>Copyright © 2022 John Wiley &amp; Sons Ltd</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3326-1e09069b4d3b21573950579066caeeb9dadf4facea753f68cb8301f74abee4a53</citedby><cites>FETCH-LOGICAL-c3326-1e09069b4d3b21573950579066caeeb9dadf4facea753f68cb8301f74abee4a53</cites><orcidid>0000-0002-9534-0854 ; 0000-0002-0760-5729 ; 0000-0002-7816-9725 ; 0000-0002-9088-4828</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fjbi.14266$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fjbi.14266$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids></links><search><creatorcontrib>Barbosa, Waleska</creatorcontrib><creatorcontrib>Ferreira, Mateus</creatorcontrib><creatorcontrib>Schultz, Eduardo</creatorcontrib><creatorcontrib>Willians Luna, Leilton</creatorcontrib><creatorcontrib>Orsi Laranjeiras, Thiago</creatorcontrib><creatorcontrib>Aleixo, Alexandre</creatorcontrib><creatorcontrib>Ribas, Camila</creatorcontrib><title>Habitat association constrains population history in two sympatric ovenbirds along Amazonian floodplains</title><title>Journal of biogeography</title><description>Aim Amazonian floodplains include distinct types of seasonally flooded habitats, determined by the flooding regime and sedimentation dynamics. Some bird species prefer specific habitat types within the floodplains. To investigate whether distinct habitats are differentially affected by geologic and climatic history, we compare population history in a sympatric and closely related pair of ovenbird species with different habitat associations. Location Amazonian floodplains. Taxa Synallaxis albigularis and Mazaria propinqua (Aves; Furnariidae). Methods Occurrence records were obtained from museums and public databases. Genomic data included nuclear loci (UCE) and the mitogenome for 49 samples. SNPs from UCE data were used to infer population genetic structure and effective migration. Mitogenomes were used to build phylogenetic trees and chronograms. Both datasets were used to infer historical demographic changes and test demographic scenarios. Results S. albigularis includes geographically structured mtDNA clades with a crown age of 250 ka, whereas M. propinqua includes a single clade with a crown age of 38 ka. Effective migration is lower at the base of the Andes for S. albigularis and at the lower Negro River for M. propinqua. Population expansion is detected for both species during the Quaternary, but was steeper and more recent in M. propinqua. Main conclusions The differences in population histories relate to distinct habitat associations along Amazonian floodplains. Preference of M. propinqua for more ephemeral island habitats may favour local extinctions, leading to demographic change, low genetic variability, no population structure and smaller effective population size. In contrast, more resilient habitats along the floodplains inhabited by S. albigularis may sustain local populations, generating and maintaining local diversity. Our results suggest that climatic variations of the late Pleistocene and Holocene caused changes in distribution and connectivity of the different types of habitats along the Amazonian floodplains, affecting gene flow and population sizes of associated bird populations.</description><subject>Bird populations</subject><subject>Birds</subject><subject>demographic history</subject><subject>Demographics</subject><subject>Demography</subject><subject>Flooding</subject><subject>Floodplains</subject><subject>Floods</subject><subject>fluvial dynamics</subject><subject>Gene flow</subject><subject>Genetic structure</subject><subject>Genetic variability</subject><subject>Habitats</subject><subject>Holocene</subject><subject>Local population</subject><subject>Mitochondrial DNA</subject><subject>Museums</subject><subject>Phylogeny</subject><subject>Pleistocene</subject><subject>Population</subject><subject>Population genetics</subject><subject>Population growth</subject><subject>Population number</subject><subject>Population structure</subject><subject>Populations</subject><subject>Quaternary</subject><subject>river islands</subject><subject>Single-nucleotide polymorphism</subject><subject>Species extinction</subject><subject>Sympatric populations</subject><subject>ultraconserved elements</subject><subject>varzea</subject><issn>0305-0270</issn><issn>1365-2699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><recordid>eNp1kDFPwzAQhS0EEqUw8A8sMTGktePYqcdSAS2qxAJzdHYc6iq1g-1SlV9PSli55aSn797pPYRuKZnQfqZbZSe0yIU4QyPKBM9yIeU5GhFGeEbyklyiqxi3hBDJWTFCmyUomyBhiNFrC8l6h7V3MQWwLuLOd_t2UDc2Jh-O2DqcDh7H466DFKzG_ss4ZUMdMbTefeD5Dr69s-Bw03pfd-3J6RpdNNBGc_O3x-j96fFtsczWr8-rxXydacZykVFDJBFSFTVTOeUlk5zwspeEBmOUrKFuiga0gZKzRsy0mjFCm7IAZUwBnI3R3eDbBf-5NzFVW78Prn9Z9en5TBJZsp66HygdfIzBNFUX7A7CsaKkOhVZ9UVWv0X27HRgD7Y1x__B6uVhNVz8ANYPd1Y</recordid><startdate>202209</startdate><enddate>202209</enddate><creator>Barbosa, Waleska</creator><creator>Ferreira, Mateus</creator><creator>Schultz, Eduardo</creator><creator>Willians Luna, Leilton</creator><creator>Orsi Laranjeiras, Thiago</creator><creator>Aleixo, Alexandre</creator><creator>Ribas, Camila</creator><general>Wiley Subscription Services, Inc</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7SS</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0002-9534-0854</orcidid><orcidid>https://orcid.org/0000-0002-0760-5729</orcidid><orcidid>https://orcid.org/0000-0002-7816-9725</orcidid><orcidid>https://orcid.org/0000-0002-9088-4828</orcidid></search><sort><creationdate>202209</creationdate><title>Habitat association constrains population history in two sympatric ovenbirds along Amazonian floodplains</title><author>Barbosa, Waleska ; Ferreira, Mateus ; Schultz, Eduardo ; Willians Luna, Leilton ; Orsi Laranjeiras, Thiago ; Aleixo, Alexandre ; Ribas, Camila</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3326-1e09069b4d3b21573950579066caeeb9dadf4facea753f68cb8301f74abee4a53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Bird populations</topic><topic>Birds</topic><topic>demographic history</topic><topic>Demographics</topic><topic>Demography</topic><topic>Flooding</topic><topic>Floodplains</topic><topic>Floods</topic><topic>fluvial dynamics</topic><topic>Gene flow</topic><topic>Genetic structure</topic><topic>Genetic variability</topic><topic>Habitats</topic><topic>Holocene</topic><topic>Local population</topic><topic>Mitochondrial DNA</topic><topic>Museums</topic><topic>Phylogeny</topic><topic>Pleistocene</topic><topic>Population</topic><topic>Population genetics</topic><topic>Population growth</topic><topic>Population number</topic><topic>Population structure</topic><topic>Populations</topic><topic>Quaternary</topic><topic>river islands</topic><topic>Single-nucleotide polymorphism</topic><topic>Species extinction</topic><topic>Sympatric populations</topic><topic>ultraconserved elements</topic><topic>varzea</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Barbosa, Waleska</creatorcontrib><creatorcontrib>Ferreira, Mateus</creatorcontrib><creatorcontrib>Schultz, Eduardo</creatorcontrib><creatorcontrib>Willians Luna, Leilton</creatorcontrib><creatorcontrib>Orsi Laranjeiras, Thiago</creatorcontrib><creatorcontrib>Aleixo, Alexandre</creatorcontrib><creatorcontrib>Ribas, Camila</creatorcontrib><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Journal of biogeography</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Barbosa, Waleska</au><au>Ferreira, Mateus</au><au>Schultz, Eduardo</au><au>Willians Luna, Leilton</au><au>Orsi Laranjeiras, Thiago</au><au>Aleixo, Alexandre</au><au>Ribas, Camila</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Habitat association constrains population history in two sympatric ovenbirds along Amazonian floodplains</atitle><jtitle>Journal of biogeography</jtitle><date>2022-09</date><risdate>2022</risdate><volume>49</volume><issue>9</issue><spage>1683</spage><epage>1695</epage><pages>1683-1695</pages><issn>0305-0270</issn><eissn>1365-2699</eissn><abstract>Aim Amazonian floodplains include distinct types of seasonally flooded habitats, determined by the flooding regime and sedimentation dynamics. Some bird species prefer specific habitat types within the floodplains. To investigate whether distinct habitats are differentially affected by geologic and climatic history, we compare population history in a sympatric and closely related pair of ovenbird species with different habitat associations. Location Amazonian floodplains. Taxa Synallaxis albigularis and Mazaria propinqua (Aves; Furnariidae). Methods Occurrence records were obtained from museums and public databases. Genomic data included nuclear loci (UCE) and the mitogenome for 49 samples. SNPs from UCE data were used to infer population genetic structure and effective migration. Mitogenomes were used to build phylogenetic trees and chronograms. Both datasets were used to infer historical demographic changes and test demographic scenarios. Results S. albigularis includes geographically structured mtDNA clades with a crown age of 250 ka, whereas M. propinqua includes a single clade with a crown age of 38 ka. Effective migration is lower at the base of the Andes for S. albigularis and at the lower Negro River for M. propinqua. Population expansion is detected for both species during the Quaternary, but was steeper and more recent in M. propinqua. Main conclusions The differences in population histories relate to distinct habitat associations along Amazonian floodplains. Preference of M. propinqua for more ephemeral island habitats may favour local extinctions, leading to demographic change, low genetic variability, no population structure and smaller effective population size. In contrast, more resilient habitats along the floodplains inhabited by S. albigularis may sustain local populations, generating and maintaining local diversity. Our results suggest that climatic variations of the late Pleistocene and Holocene caused changes in distribution and connectivity of the different types of habitats along the Amazonian floodplains, affecting gene flow and population sizes of associated bird populations.</abstract><cop>Oxford</cop><pub>Wiley Subscription Services, Inc</pub><doi>10.1111/jbi.14266</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0002-9534-0854</orcidid><orcidid>https://orcid.org/0000-0002-0760-5729</orcidid><orcidid>https://orcid.org/0000-0002-7816-9725</orcidid><orcidid>https://orcid.org/0000-0002-9088-4828</orcidid><oa>free_for_read</oa></addata></record>
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subjects Bird populations
Birds
demographic history
Demographics
Demography
Flooding
Floodplains
Floods
fluvial dynamics
Gene flow
Genetic structure
Genetic variability
Habitats
Holocene
Local population
Mitochondrial DNA
Museums
Phylogeny
Pleistocene
Population
Population genetics
Population growth
Population number
Population structure
Populations
Quaternary
river islands
Single-nucleotide polymorphism
Species extinction
Sympatric populations
ultraconserved elements
varzea
title Habitat association constrains population history in two sympatric ovenbirds along Amazonian floodplains
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