Habitat association constrains population history in two sympatric ovenbirds along Amazonian floodplains
Aim Amazonian floodplains include distinct types of seasonally flooded habitats, determined by the flooding regime and sedimentation dynamics. Some bird species prefer specific habitat types within the floodplains. To investigate whether distinct habitats are differentially affected by geologic and...
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Veröffentlicht in: | Journal of biogeography 2022-09, Vol.49 (9), p.1683-1695 |
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creator | Barbosa, Waleska Ferreira, Mateus Schultz, Eduardo Willians Luna, Leilton Orsi Laranjeiras, Thiago Aleixo, Alexandre Ribas, Camila |
description | Aim
Amazonian floodplains include distinct types of seasonally flooded habitats, determined by the flooding regime and sedimentation dynamics. Some bird species prefer specific habitat types within the floodplains. To investigate whether distinct habitats are differentially affected by geologic and climatic history, we compare population history in a sympatric and closely related pair of ovenbird species with different habitat associations.
Location
Amazonian floodplains.
Taxa
Synallaxis albigularis and Mazaria propinqua (Aves; Furnariidae).
Methods
Occurrence records were obtained from museums and public databases. Genomic data included nuclear loci (UCE) and the mitogenome for 49 samples. SNPs from UCE data were used to infer population genetic structure and effective migration. Mitogenomes were used to build phylogenetic trees and chronograms. Both datasets were used to infer historical demographic changes and test demographic scenarios.
Results
S. albigularis includes geographically structured mtDNA clades with a crown age of 250 ka, whereas M. propinqua includes a single clade with a crown age of 38 ka. Effective migration is lower at the base of the Andes for S. albigularis and at the lower Negro River for M. propinqua. Population expansion is detected for both species during the Quaternary, but was steeper and more recent in M. propinqua.
Main conclusions
The differences in population histories relate to distinct habitat associations along Amazonian floodplains. Preference of M. propinqua for more ephemeral island habitats may favour local extinctions, leading to demographic change, low genetic variability, no population structure and smaller effective population size. In contrast, more resilient habitats along the floodplains inhabited by S. albigularis may sustain local populations, generating and maintaining local diversity. Our results suggest that climatic variations of the late Pleistocene and Holocene caused changes in distribution and connectivity of the different types of habitats along the Amazonian floodplains, affecting gene flow and population sizes of associated bird populations. |
doi_str_mv | 10.1111/jbi.14266 |
format | Article |
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Amazonian floodplains include distinct types of seasonally flooded habitats, determined by the flooding regime and sedimentation dynamics. Some bird species prefer specific habitat types within the floodplains. To investigate whether distinct habitats are differentially affected by geologic and climatic history, we compare population history in a sympatric and closely related pair of ovenbird species with different habitat associations.
Location
Amazonian floodplains.
Taxa
Synallaxis albigularis and Mazaria propinqua (Aves; Furnariidae).
Methods
Occurrence records were obtained from museums and public databases. Genomic data included nuclear loci (UCE) and the mitogenome for 49 samples. SNPs from UCE data were used to infer population genetic structure and effective migration. Mitogenomes were used to build phylogenetic trees and chronograms. Both datasets were used to infer historical demographic changes and test demographic scenarios.
Results
S. albigularis includes geographically structured mtDNA clades with a crown age of 250 ka, whereas M. propinqua includes a single clade with a crown age of 38 ka. Effective migration is lower at the base of the Andes for S. albigularis and at the lower Negro River for M. propinqua. Population expansion is detected for both species during the Quaternary, but was steeper and more recent in M. propinqua.
Main conclusions
The differences in population histories relate to distinct habitat associations along Amazonian floodplains. Preference of M. propinqua for more ephemeral island habitats may favour local extinctions, leading to demographic change, low genetic variability, no population structure and smaller effective population size. In contrast, more resilient habitats along the floodplains inhabited by S. albigularis may sustain local populations, generating and maintaining local diversity. Our results suggest that climatic variations of the late Pleistocene and Holocene caused changes in distribution and connectivity of the different types of habitats along the Amazonian floodplains, affecting gene flow and population sizes of associated bird populations.</description><identifier>ISSN: 0305-0270</identifier><identifier>EISSN: 1365-2699</identifier><identifier>DOI: 10.1111/jbi.14266</identifier><language>eng</language><publisher>Oxford: Wiley Subscription Services, Inc</publisher><subject>Bird populations ; Birds ; demographic history ; Demographics ; Demography ; Flooding ; Floodplains ; Floods ; fluvial dynamics ; Gene flow ; Genetic structure ; Genetic variability ; Habitats ; Holocene ; Local population ; Mitochondrial DNA ; Museums ; Phylogeny ; Pleistocene ; Population ; Population genetics ; Population growth ; Population number ; Population structure ; Populations ; Quaternary ; river islands ; Single-nucleotide polymorphism ; Species extinction ; Sympatric populations ; ultraconserved elements ; varzea</subject><ispartof>Journal of biogeography, 2022-09, Vol.49 (9), p.1683-1695</ispartof><rights>2021 John Wiley & Sons Ltd</rights><rights>Copyright © 2022 John Wiley & Sons Ltd</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3326-1e09069b4d3b21573950579066caeeb9dadf4facea753f68cb8301f74abee4a53</citedby><cites>FETCH-LOGICAL-c3326-1e09069b4d3b21573950579066caeeb9dadf4facea753f68cb8301f74abee4a53</cites><orcidid>0000-0002-9534-0854 ; 0000-0002-0760-5729 ; 0000-0002-7816-9725 ; 0000-0002-9088-4828</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fjbi.14266$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fjbi.14266$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids></links><search><creatorcontrib>Barbosa, Waleska</creatorcontrib><creatorcontrib>Ferreira, Mateus</creatorcontrib><creatorcontrib>Schultz, Eduardo</creatorcontrib><creatorcontrib>Willians Luna, Leilton</creatorcontrib><creatorcontrib>Orsi Laranjeiras, Thiago</creatorcontrib><creatorcontrib>Aleixo, Alexandre</creatorcontrib><creatorcontrib>Ribas, Camila</creatorcontrib><title>Habitat association constrains population history in two sympatric ovenbirds along Amazonian floodplains</title><title>Journal of biogeography</title><description>Aim
Amazonian floodplains include distinct types of seasonally flooded habitats, determined by the flooding regime and sedimentation dynamics. Some bird species prefer specific habitat types within the floodplains. To investigate whether distinct habitats are differentially affected by geologic and climatic history, we compare population history in a sympatric and closely related pair of ovenbird species with different habitat associations.
Location
Amazonian floodplains.
Taxa
Synallaxis albigularis and Mazaria propinqua (Aves; Furnariidae).
Methods
Occurrence records were obtained from museums and public databases. Genomic data included nuclear loci (UCE) and the mitogenome for 49 samples. SNPs from UCE data were used to infer population genetic structure and effective migration. Mitogenomes were used to build phylogenetic trees and chronograms. Both datasets were used to infer historical demographic changes and test demographic scenarios.
Results
S. albigularis includes geographically structured mtDNA clades with a crown age of 250 ka, whereas M. propinqua includes a single clade with a crown age of 38 ka. Effective migration is lower at the base of the Andes for S. albigularis and at the lower Negro River for M. propinqua. Population expansion is detected for both species during the Quaternary, but was steeper and more recent in M. propinqua.
Main conclusions
The differences in population histories relate to distinct habitat associations along Amazonian floodplains. Preference of M. propinqua for more ephemeral island habitats may favour local extinctions, leading to demographic change, low genetic variability, no population structure and smaller effective population size. In contrast, more resilient habitats along the floodplains inhabited by S. albigularis may sustain local populations, generating and maintaining local diversity. Our results suggest that climatic variations of the late Pleistocene and Holocene caused changes in distribution and connectivity of the different types of habitats along the Amazonian floodplains, affecting gene flow and population sizes of associated bird populations.</description><subject>Bird populations</subject><subject>Birds</subject><subject>demographic history</subject><subject>Demographics</subject><subject>Demography</subject><subject>Flooding</subject><subject>Floodplains</subject><subject>Floods</subject><subject>fluvial dynamics</subject><subject>Gene flow</subject><subject>Genetic structure</subject><subject>Genetic variability</subject><subject>Habitats</subject><subject>Holocene</subject><subject>Local population</subject><subject>Mitochondrial DNA</subject><subject>Museums</subject><subject>Phylogeny</subject><subject>Pleistocene</subject><subject>Population</subject><subject>Population genetics</subject><subject>Population growth</subject><subject>Population number</subject><subject>Population structure</subject><subject>Populations</subject><subject>Quaternary</subject><subject>river islands</subject><subject>Single-nucleotide polymorphism</subject><subject>Species extinction</subject><subject>Sympatric populations</subject><subject>ultraconserved elements</subject><subject>varzea</subject><issn>0305-0270</issn><issn>1365-2699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><recordid>eNp1kDFPwzAQhS0EEqUw8A8sMTGktePYqcdSAS2qxAJzdHYc6iq1g-1SlV9PSli55aSn797pPYRuKZnQfqZbZSe0yIU4QyPKBM9yIeU5GhFGeEbyklyiqxi3hBDJWTFCmyUomyBhiNFrC8l6h7V3MQWwLuLOd_t2UDc2Jh-O2DqcDh7H466DFKzG_ss4ZUMdMbTefeD5Dr69s-Bw03pfd-3J6RpdNNBGc_O3x-j96fFtsczWr8-rxXydacZykVFDJBFSFTVTOeUlk5zwspeEBmOUrKFuiga0gZKzRsy0mjFCm7IAZUwBnI3R3eDbBf-5NzFVW78Prn9Z9en5TBJZsp66HygdfIzBNFUX7A7CsaKkOhVZ9UVWv0X27HRgD7Y1x__B6uVhNVz8ANYPd1Y</recordid><startdate>202209</startdate><enddate>202209</enddate><creator>Barbosa, Waleska</creator><creator>Ferreira, Mateus</creator><creator>Schultz, Eduardo</creator><creator>Willians Luna, Leilton</creator><creator>Orsi Laranjeiras, Thiago</creator><creator>Aleixo, Alexandre</creator><creator>Ribas, Camila</creator><general>Wiley Subscription Services, Inc</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7SS</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0002-9534-0854</orcidid><orcidid>https://orcid.org/0000-0002-0760-5729</orcidid><orcidid>https://orcid.org/0000-0002-7816-9725</orcidid><orcidid>https://orcid.org/0000-0002-9088-4828</orcidid></search><sort><creationdate>202209</creationdate><title>Habitat association constrains population history in two sympatric ovenbirds along Amazonian floodplains</title><author>Barbosa, Waleska ; Ferreira, Mateus ; Schultz, Eduardo ; Willians Luna, Leilton ; Orsi Laranjeiras, Thiago ; Aleixo, Alexandre ; Ribas, Camila</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3326-1e09069b4d3b21573950579066caeeb9dadf4facea753f68cb8301f74abee4a53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Bird populations</topic><topic>Birds</topic><topic>demographic history</topic><topic>Demographics</topic><topic>Demography</topic><topic>Flooding</topic><topic>Floodplains</topic><topic>Floods</topic><topic>fluvial dynamics</topic><topic>Gene flow</topic><topic>Genetic structure</topic><topic>Genetic variability</topic><topic>Habitats</topic><topic>Holocene</topic><topic>Local population</topic><topic>Mitochondrial DNA</topic><topic>Museums</topic><topic>Phylogeny</topic><topic>Pleistocene</topic><topic>Population</topic><topic>Population genetics</topic><topic>Population growth</topic><topic>Population number</topic><topic>Population structure</topic><topic>Populations</topic><topic>Quaternary</topic><topic>river islands</topic><topic>Single-nucleotide polymorphism</topic><topic>Species extinction</topic><topic>Sympatric populations</topic><topic>ultraconserved elements</topic><topic>varzea</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Barbosa, Waleska</creatorcontrib><creatorcontrib>Ferreira, Mateus</creatorcontrib><creatorcontrib>Schultz, Eduardo</creatorcontrib><creatorcontrib>Willians Luna, Leilton</creatorcontrib><creatorcontrib>Orsi Laranjeiras, Thiago</creatorcontrib><creatorcontrib>Aleixo, Alexandre</creatorcontrib><creatorcontrib>Ribas, Camila</creatorcontrib><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Journal of biogeography</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Barbosa, Waleska</au><au>Ferreira, Mateus</au><au>Schultz, Eduardo</au><au>Willians Luna, Leilton</au><au>Orsi Laranjeiras, Thiago</au><au>Aleixo, Alexandre</au><au>Ribas, Camila</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Habitat association constrains population history in two sympatric ovenbirds along Amazonian floodplains</atitle><jtitle>Journal of biogeography</jtitle><date>2022-09</date><risdate>2022</risdate><volume>49</volume><issue>9</issue><spage>1683</spage><epage>1695</epage><pages>1683-1695</pages><issn>0305-0270</issn><eissn>1365-2699</eissn><abstract>Aim
Amazonian floodplains include distinct types of seasonally flooded habitats, determined by the flooding regime and sedimentation dynamics. Some bird species prefer specific habitat types within the floodplains. To investigate whether distinct habitats are differentially affected by geologic and climatic history, we compare population history in a sympatric and closely related pair of ovenbird species with different habitat associations.
Location
Amazonian floodplains.
Taxa
Synallaxis albigularis and Mazaria propinqua (Aves; Furnariidae).
Methods
Occurrence records were obtained from museums and public databases. Genomic data included nuclear loci (UCE) and the mitogenome for 49 samples. SNPs from UCE data were used to infer population genetic structure and effective migration. Mitogenomes were used to build phylogenetic trees and chronograms. Both datasets were used to infer historical demographic changes and test demographic scenarios.
Results
S. albigularis includes geographically structured mtDNA clades with a crown age of 250 ka, whereas M. propinqua includes a single clade with a crown age of 38 ka. Effective migration is lower at the base of the Andes for S. albigularis and at the lower Negro River for M. propinqua. Population expansion is detected for both species during the Quaternary, but was steeper and more recent in M. propinqua.
Main conclusions
The differences in population histories relate to distinct habitat associations along Amazonian floodplains. Preference of M. propinqua for more ephemeral island habitats may favour local extinctions, leading to demographic change, low genetic variability, no population structure and smaller effective population size. In contrast, more resilient habitats along the floodplains inhabited by S. albigularis may sustain local populations, generating and maintaining local diversity. Our results suggest that climatic variations of the late Pleistocene and Holocene caused changes in distribution and connectivity of the different types of habitats along the Amazonian floodplains, affecting gene flow and population sizes of associated bird populations.</abstract><cop>Oxford</cop><pub>Wiley Subscription Services, Inc</pub><doi>10.1111/jbi.14266</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0002-9534-0854</orcidid><orcidid>https://orcid.org/0000-0002-0760-5729</orcidid><orcidid>https://orcid.org/0000-0002-7816-9725</orcidid><orcidid>https://orcid.org/0000-0002-9088-4828</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Bird populations Birds demographic history Demographics Demography Flooding Floodplains Floods fluvial dynamics Gene flow Genetic structure Genetic variability Habitats Holocene Local population Mitochondrial DNA Museums Phylogeny Pleistocene Population Population genetics Population growth Population number Population structure Populations Quaternary river islands Single-nucleotide polymorphism Species extinction Sympatric populations ultraconserved elements varzea |
title | Habitat association constrains population history in two sympatric ovenbirds along Amazonian floodplains |
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