The complete chloroplast genome of Camellia confuse Craib 1914, an economically valuable oil crop
Camellia confuse Craib 1914 is an industrially valuable oil crop from southern China for which little genetic information is available. Here, we found that its complete chloroplast genome is a circular sequence (156,905 bp) with a large single-copy region (LSC) of 67,724 bp, a small single copy regi...
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Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2022-06, Vol.7 (6), p.1099-1100 |
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description | Camellia confuse Craib 1914 is an industrially valuable oil crop from southern China for which little genetic information is available. Here, we found that its complete chloroplast genome is a circular sequence (156,905 bp) with a large single-copy region (LSC) of 67,724 bp, a small single copy region (SSC) of 18,400 bp, and two inverted repeats (IRs). In total, 130 genes were identified, including 86 protein-coding genes, 36 transfer RNAs, and 8 rRNA genes. Phylogenetic analysis showed that C. confusa is close to C. meiocarpa. These results provide valuable information for accelerating research on the evolution of camellias. |
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Here, we found that its complete chloroplast genome is a circular sequence (156,905 bp) with a large single-copy region (LSC) of 67,724 bp, a small single copy region (SSC) of 18,400 bp, and two inverted repeats (IRs). In total, 130 genes were identified, including 86 protein-coding genes, 36 transfer RNAs, and 8 rRNA genes. Phylogenetic analysis showed that C. confusa is close to C. meiocarpa. These results provide valuable information for accelerating research on the evolution of camellias.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2022.2087547</identifier><identifier>PMID: 35783066</identifier><language>eng</language><publisher>Abingdon: Taylor & Francis</publisher><subject>Camellia ; Camellia confusa ; chloroplast genome ; Chloroplasts ; Forestry ; Genomes ; Maximum likelihood method ; Mitochondrial DNA ; Mitogenome Announcement ; Nucleotide sequence ; Oilseeds ; Phylogenetics ; Phylogeny ; Proteins ; rRNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2022-06, Vol.7 (6), p.1099-1100</ispartof><rights>2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2022</rights><rights>2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 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Published by Informa UK Limited, trading as Taylor & Francis Group. 2022 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c4027-70d32cd9f9aa05f7261312c20c7a2a6dad0e37c8173a16bbb2ebcd7856d3b8113</cites><orcidid>0000-0001-7529-1373</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9246039/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9246039/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2102,27502,27924,27925,53791,53793,59143,59144</link.rule.ids></links><search><creatorcontrib>Wu, Si</creatorcontrib><creatorcontrib>Yang, Mei Ying</creatorcontrib><creatorcontrib>Fan, Meng Long</creatorcontrib><creatorcontrib>Zhang, Ying</creatorcontrib><creatorcontrib>Li, Xin Lei</creatorcontrib><creatorcontrib>Yin, Heng Fu</creatorcontrib><creatorcontrib>Li, Ji Yuan</creatorcontrib><title>The complete chloroplast genome of Camellia confuse Craib 1914, an economically valuable oil crop</title><title>Mitochondrial DNA. Part B. Resources</title><description>Camellia confuse Craib 1914 is an industrially valuable oil crop from southern China for which little genetic information is available. Here, we found that its complete chloroplast genome is a circular sequence (156,905 bp) with a large single-copy region (LSC) of 67,724 bp, a small single copy region (SSC) of 18,400 bp, and two inverted repeats (IRs). In total, 130 genes were identified, including 86 protein-coding genes, 36 transfer RNAs, and 8 rRNA genes. Phylogenetic analysis showed that C. confusa is close to C. meiocarpa. These results provide valuable information for accelerating research on the evolution of camellias.</description><subject>Camellia</subject><subject>Camellia confusa</subject><subject>chloroplast genome</subject><subject>Chloroplasts</subject><subject>Forestry</subject><subject>Genomes</subject><subject>Maximum likelihood method</subject><subject>Mitochondrial DNA</subject><subject>Mitogenome Announcement</subject><subject>Nucleotide sequence</subject><subject>Oilseeds</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Proteins</subject><subject>rRNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kk1vEzEQhlcIRKvQn4BkiQsHUvyxa68vCBQBrVSJSzlb46_EkXcd7N2i_Hu8JKCWAxd7NPPOY3v8Ns1rgq8J7vF7ynpMWSevKaa0Lr3oWvGsuVzy66Xw_FF80VyVsscYE86EkOJlc8E60TPM-WUD9zuHTBoO0U012MWU0yFCmdDWjWlwKHm0gcHFGKDqRj8XhzYZgkZEkvYdghG5mk9DMBDjET1AnEHH2hgiMhX2qnnhIRZ3dd5Xzfcvn-83N-u7b19vN5_u1qbFVKwFtowaK70EwJ0XlBNGqKHYCKDALVjsmDA9EQwI11pTp40Vfcct0z0hbNXcnrg2wV4dchggH1WCoH4nUt4qyFMw0akWpNCUWQeSt954qE_RLfVEM-JoPWHVfDixDrMenDVunDLEJ9CnlTHs1DY9KElbjpmsgLdnQE4_ZlcmNYRi6hRhdGkuivK-w6yl_SJ98490n-Y81lFVlSSkI7xdVN1JVUdaSnb-72UIVosn1B9PqMUT6uyJ2vfx1BdGn_IAP1OOVk1wrB_tM4wmFMX-j_gFqk27Qw</recordid><startdate>20220603</startdate><enddate>20220603</enddate><creator>Wu, Si</creator><creator>Yang, Mei Ying</creator><creator>Fan, Meng Long</creator><creator>Zhang, Ying</creator><creator>Li, Xin Lei</creator><creator>Yin, Heng Fu</creator><creator>Li, Ji Yuan</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0001-7529-1373</orcidid></search><sort><creationdate>20220603</creationdate><title>The complete chloroplast genome of Camellia confuse Craib 1914, an economically valuable oil crop</title><author>Wu, Si ; Yang, Mei Ying ; Fan, Meng Long ; Zhang, Ying ; Li, Xin Lei ; Yin, Heng Fu ; Li, Ji Yuan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4027-70d32cd9f9aa05f7261312c20c7a2a6dad0e37c8173a16bbb2ebcd7856d3b8113</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Camellia</topic><topic>Camellia confusa</topic><topic>chloroplast genome</topic><topic>Chloroplasts</topic><topic>Forestry</topic><topic>Genomes</topic><topic>Maximum likelihood method</topic><topic>Mitochondrial DNA</topic><topic>Mitogenome Announcement</topic><topic>Nucleotide sequence</topic><topic>Oilseeds</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Proteins</topic><topic>rRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wu, Si</creatorcontrib><creatorcontrib>Yang, Mei Ying</creatorcontrib><creatorcontrib>Fan, Meng Long</creatorcontrib><creatorcontrib>Zhang, Ying</creatorcontrib><creatorcontrib>Li, Xin Lei</creatorcontrib><creatorcontrib>Yin, Heng Fu</creatorcontrib><creatorcontrib>Li, Ji Yuan</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Access via ProQuest (Open Access)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wu, Si</au><au>Yang, Mei Ying</au><au>Fan, Meng Long</au><au>Zhang, Ying</au><au>Li, Xin Lei</au><au>Yin, Heng Fu</au><au>Li, Ji Yuan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete chloroplast genome of Camellia confuse Craib 1914, an economically valuable oil crop</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><date>2022-06-03</date><risdate>2022</risdate><volume>7</volume><issue>6</issue><spage>1099</spage><epage>1100</epage><pages>1099-1100</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>Camellia confuse Craib 1914 is an industrially valuable oil crop from southern China for which little genetic information is available. Here, we found that its complete chloroplast genome is a circular sequence (156,905 bp) with a large single-copy region (LSC) of 67,724 bp, a small single copy region (SSC) of 18,400 bp, and two inverted repeats (IRs). In total, 130 genes were identified, including 86 protein-coding genes, 36 transfer RNAs, and 8 rRNA genes. Phylogenetic analysis showed that C. confusa is close to C. meiocarpa. These results provide valuable information for accelerating research on the evolution of camellias.</abstract><cop>Abingdon</cop><pub>Taylor & Francis</pub><pmid>35783066</pmid><doi>10.1080/23802359.2022.2087547</doi><tpages>2</tpages><orcidid>https://orcid.org/0000-0001-7529-1373</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Camellia Camellia confusa chloroplast genome Chloroplasts Forestry Genomes Maximum likelihood method Mitochondrial DNA Mitogenome Announcement Nucleotide sequence Oilseeds Phylogenetics Phylogeny Proteins rRNA |
title | The complete chloroplast genome of Camellia confuse Craib 1914, an economically valuable oil crop |
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