Isolation-by-ecology in a Neotropical savanna tree
Although spatial analysis of population genetic structure has been one of the most important ways to infer microevolutionary processes, these studies are usually focused on neutral dynamics and limited dispersal, interpreted under the theoretical reasoning of isolation-by-distance. More recently,...
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description |
Although spatial analysis of population genetic structure has been one of the most important ways to infer microevolutionary processes, these studies are usually focused on neutral dynamics and limited dispersal, interpreted under the theoretical reasoning of isolation-by-distance. More recently, however, there has been a growing interest on how environmental variation is also involved in population differentiation, both by direct effects of local adaptation and other processes related to environmentally or ecologically constrained dispersal. Here we evaluated patterns of genetic population structure and isolation-by-ecology, or environment (IBE), in
Eugenia dysenterica
DC (Myrtaceae), a fruit tree species of economic potential interest and widely distributed throughout the Central Brazil and endemic to the Cerrado biome (Neotropical savannas). We analyzed population structure using nuclear SSR markers for 736 individuals sampled from 23 localities (local population) and disentangled the effects of genetic molecular variation, estimated by pairwise
F
ST
(matrix
G
) and geographical distances (matrix
S
) into Grinnelian niche of populations (matrix
E
), based on climate and soil data. Spatial patterns in eigenvectors of
G
and
E
reveal northwest-southeast gradients, coherent with geographic range shifts after the Last Glacial Maximum. We used different forms of Mantel regression and correlation and redundancy analyses, as well as simulations of isolation-by-distance, to show that there is a significant partial correlation between
G
and
E
taking
S
into account, thus supporting the IBE process for
E. dysenterica
, in addition to other processes related to spatially constrained gene flow. |
doi_str_mv | 10.1007/s11295-022-01555-w |
format | Article |
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Although spatial analysis of population genetic structure has been one of the most important ways to infer microevolutionary processes, these studies are usually focused on neutral dynamics and limited dispersal, interpreted under the theoretical reasoning of isolation-by-distance. More recently, however, there has been a growing interest on how environmental variation is also involved in population differentiation, both by direct effects of local adaptation and other processes related to environmentally or ecologically constrained dispersal. Here we evaluated patterns of genetic population structure and isolation-by-ecology, or environment (IBE), in
Eugenia dysenterica
DC (Myrtaceae), a fruit tree species of economic potential interest and widely distributed throughout the Central Brazil and endemic to the Cerrado biome (Neotropical savannas). We analyzed population structure using nuclear SSR markers for 736 individuals sampled from 23 localities (local population) and disentangled the effects of genetic molecular variation, estimated by pairwise
F
ST
(matrix
G
) and geographical distances (matrix
S
) into Grinnelian niche of populations (matrix
E
), based on climate and soil data. Spatial patterns in eigenvectors of
G
and
E
reveal northwest-southeast gradients, coherent with geographic range shifts after the Last Glacial Maximum. We used different forms of Mantel regression and correlation and redundancy analyses, as well as simulations of isolation-by-distance, to show that there is a significant partial correlation between
G
and
E
taking
S
into account, thus supporting the IBE process for
E. dysenterica
, in addition to other processes related to spatially constrained gene flow.</description><identifier>ISSN: 1614-2942</identifier><identifier>EISSN: 1614-2950</identifier><identifier>DOI: 10.1007/s11295-022-01555-w</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Biomedical and Life Sciences ; Biotechnology ; Dispersion ; Eigenvectors ; Forestry ; Fruit trees ; Gene flow ; Genetic analysis ; Genetic diversity ; Genetic structure ; Life Sciences ; Local population ; Original Article ; Plant Breeding/Biotechnology ; Plant Genetics and Genomics ; Plant species ; Population ; Population differentiation ; Population genetics ; Population structure ; Redundancy ; Savannahs ; Spatial analysis ; Tree Biology</subject><ispartof>Tree genetics & genomes, 2022-06, Vol.18 (3), Article 23</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2022</rights><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2022.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c319t-ca7f6c25018d1785dd0be422bb133a26086252ccf7210ffba2859ff601efe8b73</citedby><cites>FETCH-LOGICAL-c319t-ca7f6c25018d1785dd0be422bb133a26086252ccf7210ffba2859ff601efe8b73</cites><orcidid>0000-0002-0967-9684</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11295-022-01555-w$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11295-022-01555-w$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,777,781,27905,27906,41469,42538,51300</link.rule.ids></links><search><creatorcontrib>Diniz-Filho, José Alexandre F.</creatorcontrib><creatorcontrib>Soares, Thannya Nascimento</creatorcontrib><creatorcontrib>Chaves, Lázaro José</creatorcontrib><creatorcontrib>Terribile, Levi Carina</creatorcontrib><creatorcontrib>Telles, Mariana P. C.</creatorcontrib><title>Isolation-by-ecology in a Neotropical savanna tree</title><title>Tree genetics & genomes</title><addtitle>Tree Genetics & Genomes</addtitle><description>
Although spatial analysis of population genetic structure has been one of the most important ways to infer microevolutionary processes, these studies are usually focused on neutral dynamics and limited dispersal, interpreted under the theoretical reasoning of isolation-by-distance. More recently, however, there has been a growing interest on how environmental variation is also involved in population differentiation, both by direct effects of local adaptation and other processes related to environmentally or ecologically constrained dispersal. Here we evaluated patterns of genetic population structure and isolation-by-ecology, or environment (IBE), in
Eugenia dysenterica
DC (Myrtaceae), a fruit tree species of economic potential interest and widely distributed throughout the Central Brazil and endemic to the Cerrado biome (Neotropical savannas). We analyzed population structure using nuclear SSR markers for 736 individuals sampled from 23 localities (local population) and disentangled the effects of genetic molecular variation, estimated by pairwise
F
ST
(matrix
G
) and geographical distances (matrix
S
) into Grinnelian niche of populations (matrix
E
), based on climate and soil data. Spatial patterns in eigenvectors of
G
and
E
reveal northwest-southeast gradients, coherent with geographic range shifts after the Last Glacial Maximum. We used different forms of Mantel regression and correlation and redundancy analyses, as well as simulations of isolation-by-distance, to show that there is a significant partial correlation between
G
and
E
taking
S
into account, thus supporting the IBE process for
E. dysenterica
, in addition to other processes related to spatially constrained gene flow.</description><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Dispersion</subject><subject>Eigenvectors</subject><subject>Forestry</subject><subject>Fruit trees</subject><subject>Gene flow</subject><subject>Genetic analysis</subject><subject>Genetic diversity</subject><subject>Genetic structure</subject><subject>Life Sciences</subject><subject>Local population</subject><subject>Original Article</subject><subject>Plant Breeding/Biotechnology</subject><subject>Plant Genetics and Genomics</subject><subject>Plant species</subject><subject>Population</subject><subject>Population differentiation</subject><subject>Population genetics</subject><subject>Population structure</subject><subject>Redundancy</subject><subject>Savannahs</subject><subject>Spatial analysis</subject><subject>Tree Biology</subject><issn>1614-2942</issn><issn>1614-2950</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kE1LxDAQhoMouK7-AU8Fz9GZaZO0R1n8WFj0oueQZpOlS21q0nXZf2-1ojdPMwzP-w48jF0iXCOAukmIVAkORBxQCMH3R2yGEgs-nuH4dy_olJ2ltAUoFEg5Y7RMoTVDEzpeH7izoQ2bQ9Z0mcmeXBhi6Btr2iyZD9N1Jhuic-fsxJs2uYufOWev93cvi0e-en5YLm5X3OZYDdwa5aUlAViuUZVivYbaFUR1jXluSEIpSZC1XhGC97WhUlTeS0DnXVmrfM6upt4-hvedS4Pehl3sxpeapFRQFkrRSNFE2RhSis7rPjZvJh40gv5yoyc3enSjv93o_RjKp1Aa4W7j4l_1P6lPLXFmgA</recordid><startdate>20220601</startdate><enddate>20220601</enddate><creator>Diniz-Filho, José Alexandre F.</creator><creator>Soares, Thannya Nascimento</creator><creator>Chaves, Lázaro José</creator><creator>Terribile, Levi Carina</creator><creator>Telles, Mariana P. C.</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0002-0967-9684</orcidid></search><sort><creationdate>20220601</creationdate><title>Isolation-by-ecology in a Neotropical savanna tree</title><author>Diniz-Filho, José Alexandre F. ; Soares, Thannya Nascimento ; Chaves, Lázaro José ; Terribile, Levi Carina ; Telles, Mariana P. C.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c319t-ca7f6c25018d1785dd0be422bb133a26086252ccf7210ffba2859ff601efe8b73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Dispersion</topic><topic>Eigenvectors</topic><topic>Forestry</topic><topic>Fruit trees</topic><topic>Gene flow</topic><topic>Genetic analysis</topic><topic>Genetic diversity</topic><topic>Genetic structure</topic><topic>Life Sciences</topic><topic>Local population</topic><topic>Original Article</topic><topic>Plant Breeding/Biotechnology</topic><topic>Plant Genetics and Genomics</topic><topic>Plant species</topic><topic>Population</topic><topic>Population differentiation</topic><topic>Population genetics</topic><topic>Population structure</topic><topic>Redundancy</topic><topic>Savannahs</topic><topic>Spatial analysis</topic><topic>Tree Biology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Diniz-Filho, José Alexandre F.</creatorcontrib><creatorcontrib>Soares, Thannya Nascimento</creatorcontrib><creatorcontrib>Chaves, Lázaro José</creatorcontrib><creatorcontrib>Terribile, Levi Carina</creatorcontrib><creatorcontrib>Telles, Mariana P. C.</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><jtitle>Tree genetics & genomes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Diniz-Filho, José Alexandre F.</au><au>Soares, Thannya Nascimento</au><au>Chaves, Lázaro José</au><au>Terribile, Levi Carina</au><au>Telles, Mariana P. C.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Isolation-by-ecology in a Neotropical savanna tree</atitle><jtitle>Tree genetics & genomes</jtitle><stitle>Tree Genetics & Genomes</stitle><date>2022-06-01</date><risdate>2022</risdate><volume>18</volume><issue>3</issue><artnum>23</artnum><issn>1614-2942</issn><eissn>1614-2950</eissn><abstract>
Although spatial analysis of population genetic structure has been one of the most important ways to infer microevolutionary processes, these studies are usually focused on neutral dynamics and limited dispersal, interpreted under the theoretical reasoning of isolation-by-distance. More recently, however, there has been a growing interest on how environmental variation is also involved in population differentiation, both by direct effects of local adaptation and other processes related to environmentally or ecologically constrained dispersal. Here we evaluated patterns of genetic population structure and isolation-by-ecology, or environment (IBE), in
Eugenia dysenterica
DC (Myrtaceae), a fruit tree species of economic potential interest and widely distributed throughout the Central Brazil and endemic to the Cerrado biome (Neotropical savannas). We analyzed population structure using nuclear SSR markers for 736 individuals sampled from 23 localities (local population) and disentangled the effects of genetic molecular variation, estimated by pairwise
F
ST
(matrix
G
) and geographical distances (matrix
S
) into Grinnelian niche of populations (matrix
E
), based on climate and soil data. Spatial patterns in eigenvectors of
G
and
E
reveal northwest-southeast gradients, coherent with geographic range shifts after the Last Glacial Maximum. We used different forms of Mantel regression and correlation and redundancy analyses, as well as simulations of isolation-by-distance, to show that there is a significant partial correlation between
G
and
E
taking
S
into account, thus supporting the IBE process for
E. dysenterica
, in addition to other processes related to spatially constrained gene flow.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><doi>10.1007/s11295-022-01555-w</doi><orcidid>https://orcid.org/0000-0002-0967-9684</orcidid></addata></record> |
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subjects | Biomedical and Life Sciences Biotechnology Dispersion Eigenvectors Forestry Fruit trees Gene flow Genetic analysis Genetic diversity Genetic structure Life Sciences Local population Original Article Plant Breeding/Biotechnology Plant Genetics and Genomics Plant species Population Population differentiation Population genetics Population structure Redundancy Savannahs Spatial analysis Tree Biology |
title | Isolation-by-ecology in a Neotropical savanna tree |
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