Multi-Scale Binary Pattern Encoding Network for Cancer Classification in Pathology Images
Multi-scale approaches have been widely studied in pathology image analysis. These offer an ability to characterize tissues in an image at various scales, in which the tissues may appear differently. Many of such methods have focused on extracting multi-scale hand-crafted features and applied them t...
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Veröffentlicht in: | IEEE journal of biomedical and health informatics 2022-03, Vol.26 (3), p.1152-1163 |
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description | Multi-scale approaches have been widely studied in pathology image analysis. These offer an ability to characterize tissues in an image at various scales, in which the tissues may appear differently. Many of such methods have focused on extracting multi-scale hand-crafted features and applied them to various tasks in pathology image analysis. Even, several deep learning methods explicitly adopt the multi-scale approaches. However, most of these methods simply merge the multi-scale features together or adopt the coarse-to-fine/fine-to-coarse strategy, which uses the features one at a time in a sequential manner. Utilizing the multi-scale features in a cooperative and discriminative fashion, the learning capabilities could be further improved. Herein, we propose a multi-scale approach that can identify and leverage the patterns of the multiple scales within a deep neural network and provide the superior capability of cancer classification. The patterns of the features across multiple scales are encoded as a binary pattern code and further converted to a decimal number, which can be easily embedded in the current framework of the deep neural networks. To evaluate the proposed method, multiple sets of pathology images are employed. Under the various experimental settings, the proposed method is systematically assessed and shows an improved classification performance in comparison to other competing methods. |
doi_str_mv | 10.1109/JBHI.2021.3099817 |
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L. ; Song, Boram ; Kim, Kyungeun ; Cho, Yong M. ; Kwak, Jin T.</creator><creatorcontrib>Vuong, Trinh T. L. ; Song, Boram ; Kim, Kyungeun ; Cho, Yong M. ; Kwak, Jin T.</creatorcontrib><description>Multi-scale approaches have been widely studied in pathology image analysis. These offer an ability to characterize tissues in an image at various scales, in which the tissues may appear differently. Many of such methods have focused on extracting multi-scale hand-crafted features and applied them to various tasks in pathology image analysis. Even, several deep learning methods explicitly adopt the multi-scale approaches. However, most of these methods simply merge the multi-scale features together or adopt the coarse-to-fine/fine-to-coarse strategy, which uses the features one at a time in a sequential manner. Utilizing the multi-scale features in a cooperative and discriminative fashion, the learning capabilities could be further improved. Herein, we propose a multi-scale approach that can identify and leverage the patterns of the multiple scales within a deep neural network and provide the superior capability of cancer classification. The patterns of the features across multiple scales are encoded as a binary pattern code and further converted to a decimal number, which can be easily embedded in the current framework of the deep neural networks. To evaluate the proposed method, multiple sets of pathology images are employed. Under the various experimental settings, the proposed method is systematically assessed and shows an improved classification performance in comparison to other competing methods.</description><identifier>ISSN: 2168-2194</identifier><identifier>EISSN: 2168-2208</identifier><identifier>DOI: 10.1109/JBHI.2021.3099817</identifier><identifier>PMID: 34310334</identifier><identifier>CODEN: IJBHA9</identifier><language>eng</language><publisher>United States: IEEE</publisher><subject>Artificial neural networks ; Binary codes ; binary pattern ; Breast cancer ; Cancer ; Cancer classification ; Cancer detection ; Classification ; convolutional neural network ; Deep learning ; digital pathology ; Feature extraction ; Humans ; Image analysis ; Image classification ; Image processing ; Image Processing, Computer-Assisted - methods ; Image segmentation ; Machine learning ; multi-scale ; Multiscale analysis ; Neoplasms - diagnostic imaging ; Neural networks ; Neural Networks, Computer ; Pathology ; Prostate cancer</subject><ispartof>IEEE journal of biomedical and health informatics, 2022-03, Vol.26 (3), p.1152-1163</ispartof><rights>Copyright The Institute of Electrical and Electronics Engineers, Inc. (IEEE) 2022</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c419t-73d6fa913620c035786442695f5a04c0aa5f68b8248646fe15fbd7fdfb51bb6a3</citedby><cites>FETCH-LOGICAL-c419t-73d6fa913620c035786442695f5a04c0aa5f68b8248646fe15fbd7fdfb51bb6a3</cites><orcidid>0000-0003-1598-8552 ; 0000-0002-0775-2884 ; 0000-0003-0287-4097</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://ieeexplore.ieee.org/document/9496153$$EHTML$$P50$$Gieee$$H</linktohtml><link.rule.ids>314,780,784,796,27924,27925,54758</link.rule.ids><linktorsrc>$$Uhttps://ieeexplore.ieee.org/document/9496153$$EView_record_in_IEEE$$FView_record_in_$$GIEEE</linktorsrc><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34310334$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Vuong, Trinh T. L.</creatorcontrib><creatorcontrib>Song, Boram</creatorcontrib><creatorcontrib>Kim, Kyungeun</creatorcontrib><creatorcontrib>Cho, Yong M.</creatorcontrib><creatorcontrib>Kwak, Jin T.</creatorcontrib><title>Multi-Scale Binary Pattern Encoding Network for Cancer Classification in Pathology Images</title><title>IEEE journal of biomedical and health informatics</title><addtitle>JBHI</addtitle><addtitle>IEEE J Biomed Health Inform</addtitle><description>Multi-scale approaches have been widely studied in pathology image analysis. These offer an ability to characterize tissues in an image at various scales, in which the tissues may appear differently. Many of such methods have focused on extracting multi-scale hand-crafted features and applied them to various tasks in pathology image analysis. Even, several deep learning methods explicitly adopt the multi-scale approaches. However, most of these methods simply merge the multi-scale features together or adopt the coarse-to-fine/fine-to-coarse strategy, which uses the features one at a time in a sequential manner. Utilizing the multi-scale features in a cooperative and discriminative fashion, the learning capabilities could be further improved. Herein, we propose a multi-scale approach that can identify and leverage the patterns of the multiple scales within a deep neural network and provide the superior capability of cancer classification. The patterns of the features across multiple scales are encoded as a binary pattern code and further converted to a decimal number, which can be easily embedded in the current framework of the deep neural networks. To evaluate the proposed method, multiple sets of pathology images are employed. Under the various experimental settings, the proposed method is systematically assessed and shows an improved classification performance in comparison to other competing methods.</description><subject>Artificial neural networks</subject><subject>Binary codes</subject><subject>binary pattern</subject><subject>Breast cancer</subject><subject>Cancer</subject><subject>Cancer classification</subject><subject>Cancer detection</subject><subject>Classification</subject><subject>convolutional neural network</subject><subject>Deep learning</subject><subject>digital pathology</subject><subject>Feature extraction</subject><subject>Humans</subject><subject>Image analysis</subject><subject>Image classification</subject><subject>Image processing</subject><subject>Image Processing, Computer-Assisted - methods</subject><subject>Image segmentation</subject><subject>Machine learning</subject><subject>multi-scale</subject><subject>Multiscale analysis</subject><subject>Neoplasms - diagnostic imaging</subject><subject>Neural networks</subject><subject>Neural Networks, Computer</subject><subject>Pathology</subject><subject>Prostate cancer</subject><issn>2168-2194</issn><issn>2168-2208</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>RIE</sourceid><sourceid>EIF</sourceid><recordid>eNpdkMtKAzEUhoMoWtQHEEEG3LiZmvtMlrZ4qXgDdeEqZDJJjU4TTWYQ396UVhdmc8I53384fAAcIDhGCIrT68nVbIwhRmMChahRtQFGGPG6xBjWm79_JOgO2E_pDeZX55bg22CHUIIgIXQEXm6Hrnflo1adKSbOq_hdPKi-N9EX516H1vl5cWf6rxDfCxtiMVVem1w6lZKzTqveBV84v0y9hi7Mv4vZQs1N2gNbVnXJ7K_rLni-OH-aXpU395ez6dlNqSkSfVmRllslEOEYakhYVXNKMRfMMgWphkoxy-umxjQPuDWI2aatbGsbhpqGK7ILTlZ7P2L4HEzq5cIlbbpOeROGJDFjjBPBeZ3R43_oWxiiz9dJzElFiaCcZgqtKB1DStFY-RHdIouRCMqlerlUL5fq5Vp9zhytNw_NwrR_iV_RGThcAc4Y8zcWVHDECPkBWSyGCg</recordid><startdate>20220301</startdate><enddate>20220301</enddate><creator>Vuong, Trinh T. 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L. ; Song, Boram ; Kim, Kyungeun ; Cho, Yong M. ; Kwak, Jin T.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c419t-73d6fa913620c035786442695f5a04c0aa5f68b8248646fe15fbd7fdfb51bb6a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Artificial neural networks</topic><topic>Binary codes</topic><topic>binary pattern</topic><topic>Breast cancer</topic><topic>Cancer</topic><topic>Cancer classification</topic><topic>Cancer detection</topic><topic>Classification</topic><topic>convolutional neural network</topic><topic>Deep learning</topic><topic>digital pathology</topic><topic>Feature extraction</topic><topic>Humans</topic><topic>Image analysis</topic><topic>Image classification</topic><topic>Image processing</topic><topic>Image Processing, Computer-Assisted - methods</topic><topic>Image segmentation</topic><topic>Machine learning</topic><topic>multi-scale</topic><topic>Multiscale analysis</topic><topic>Neoplasms - diagnostic imaging</topic><topic>Neural networks</topic><topic>Neural Networks, Computer</topic><topic>Pathology</topic><topic>Prostate cancer</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Vuong, Trinh T. L.</creatorcontrib><creatorcontrib>Song, Boram</creatorcontrib><creatorcontrib>Kim, Kyungeun</creatorcontrib><creatorcontrib>Cho, Yong M.</creatorcontrib><creatorcontrib>Kwak, Jin T.</creatorcontrib><collection>IEEE All-Society Periodicals Package (ASPP) 2005-present</collection><collection>IEEE All-Society Periodicals Package (ASPP) 1998-Present</collection><collection>IEEE Electronic Library (IEL)</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Nursing & Allied Health Premium</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>IEEE journal of biomedical and health informatics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Vuong, Trinh T. L.</au><au>Song, Boram</au><au>Kim, Kyungeun</au><au>Cho, Yong M.</au><au>Kwak, Jin T.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Multi-Scale Binary Pattern Encoding Network for Cancer Classification in Pathology Images</atitle><jtitle>IEEE journal of biomedical and health informatics</jtitle><stitle>JBHI</stitle><addtitle>IEEE J Biomed Health Inform</addtitle><date>2022-03-01</date><risdate>2022</risdate><volume>26</volume><issue>3</issue><spage>1152</spage><epage>1163</epage><pages>1152-1163</pages><issn>2168-2194</issn><eissn>2168-2208</eissn><coden>IJBHA9</coden><abstract>Multi-scale approaches have been widely studied in pathology image analysis. These offer an ability to characterize tissues in an image at various scales, in which the tissues may appear differently. Many of such methods have focused on extracting multi-scale hand-crafted features and applied them to various tasks in pathology image analysis. 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subjects | Artificial neural networks Binary codes binary pattern Breast cancer Cancer Cancer classification Cancer detection Classification convolutional neural network Deep learning digital pathology Feature extraction Humans Image analysis Image classification Image processing Image Processing, Computer-Assisted - methods Image segmentation Machine learning multi-scale Multiscale analysis Neoplasms - diagnostic imaging Neural networks Neural Networks, Computer Pathology Prostate cancer |
title | Multi-Scale Binary Pattern Encoding Network for Cancer Classification in Pathology Images |
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