The genetic diversity of wild grapes in Mexico
This is the first report evaluating the genetic diversity of Mexican grape species utilizing DNA-based markers to understand the distribution of grape species, and patterns of hybridization. The study utilized accessions maintained in three collections in Mexico, one in the USA and recently collecte...
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Veröffentlicht in: | Genetic resources and crop evolution 2022-03, Vol.69 (3), p.1329-1347 |
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creator | Huerta-Acosta, Karla G. Riaz, Summaira Franco-Mora, Omar Cruz-Castillo, Juan G. Walker, M. Andrew |
description | This is the first report evaluating the genetic diversity of Mexican grape species utilizing DNA-based markers to understand the distribution of grape species, and patterns of hybridization. The study utilized accessions maintained in three collections in Mexico, one in the USA and recently collected germplasm. Fifteen SSR markers were used to develop a fingerprint database to identify unique germplasm. Two different clustering analyses without prior population assignment, were used to identify groups that were verified by a Discriminant Analysis of Principal Components and a Principal Coordinate Analysis. Genetic diversity estimates were made across and within groups to validate the results obtained from the clustering analyses. Multiple clustering analyses and diversity parameters supported six genetic groups representing different geographic regions. The Northeastern group was the most diverse with a geographic range extending to Eastern and Central Mexico, while the Coahuila group was the least diverse.
Vitis arizonica
Engelm. and
Vitis cinerea
Engelm. ex Millardet were the most abundant species with many hybrid forms. We provide evidence that wild grape species in Mexico follow the physical barriers of mountain ranges like the Sierra Madre Oriental with an east–west divide and the Trans-Mexican Volcanic Belt as a corridor for gene flow among different grape species. Additional collections are required to fully understand the extent of hybridization and to clarify hybrid zones. |
doi_str_mv | 10.1007/s10722-021-01307-0 |
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Vitis arizonica
Engelm. and
Vitis cinerea
Engelm. ex Millardet were the most abundant species with many hybrid forms. We provide evidence that wild grape species in Mexico follow the physical barriers of mountain ranges like the Sierra Madre Oriental with an east–west divide and the Trans-Mexican Volcanic Belt as a corridor for gene flow among different grape species. Additional collections are required to fully understand the extent of hybridization and to clarify hybrid zones.</description><identifier>ISSN: 0925-9864</identifier><identifier>EISSN: 1573-5109</identifier><identifier>DOI: 10.1007/s10722-021-01307-0</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Agriculture ; Barriers ; Biomedical and Life Sciences ; Clustering ; Discriminant analysis ; Fruits ; Gene flow ; Genetic analysis ; Genetic diversity ; Geographical distribution ; Germplasm ; Grapes ; Hybrid zones ; Hybridization ; Life Sciences ; Markers ; Mountains ; Plant Genetics and Genomics ; Plant Physiology ; Plant Sciences ; Plant Systematics/Taxonomy/Biogeography ; Range extension ; Research Article ; Species ; Species diversity ; Vitis arizonica ; Vitis cinerea ; Volcanic belts</subject><ispartof>Genetic resources and crop evolution, 2022-03, Vol.69 (3), p.1329-1347</ispartof><rights>The Author(s) 2021</rights><rights>The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c363t-a08a89a8a3d345bdbeb0f50d95f2d111f14d07001444831750a5bba5a45e27273</citedby><cites>FETCH-LOGICAL-c363t-a08a89a8a3d345bdbeb0f50d95f2d111f14d07001444831750a5bba5a45e27273</cites><orcidid>0000-0001-5422-821X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10722-021-01307-0$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10722-021-01307-0$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids></links><search><creatorcontrib>Huerta-Acosta, Karla G.</creatorcontrib><creatorcontrib>Riaz, Summaira</creatorcontrib><creatorcontrib>Franco-Mora, Omar</creatorcontrib><creatorcontrib>Cruz-Castillo, Juan G.</creatorcontrib><creatorcontrib>Walker, M. Andrew</creatorcontrib><title>The genetic diversity of wild grapes in Mexico</title><title>Genetic resources and crop evolution</title><addtitle>Genet Resour Crop Evol</addtitle><description>This is the first report evaluating the genetic diversity of Mexican grape species utilizing DNA-based markers to understand the distribution of grape species, and patterns of hybridization. The study utilized accessions maintained in three collections in Mexico, one in the USA and recently collected germplasm. Fifteen SSR markers were used to develop a fingerprint database to identify unique germplasm. Two different clustering analyses without prior population assignment, were used to identify groups that were verified by a Discriminant Analysis of Principal Components and a Principal Coordinate Analysis. Genetic diversity estimates were made across and within groups to validate the results obtained from the clustering analyses. Multiple clustering analyses and diversity parameters supported six genetic groups representing different geographic regions. The Northeastern group was the most diverse with a geographic range extending to Eastern and Central Mexico, while the Coahuila group was the least diverse.
Vitis arizonica
Engelm. and
Vitis cinerea
Engelm. ex Millardet were the most abundant species with many hybrid forms. We provide evidence that wild grape species in Mexico follow the physical barriers of mountain ranges like the Sierra Madre Oriental with an east–west divide and the Trans-Mexican Volcanic Belt as a corridor for gene flow among different grape species. Additional collections are required to fully understand the extent of hybridization and to clarify hybrid zones.</description><subject>Agriculture</subject><subject>Barriers</subject><subject>Biomedical and Life Sciences</subject><subject>Clustering</subject><subject>Discriminant analysis</subject><subject>Fruits</subject><subject>Gene flow</subject><subject>Genetic analysis</subject><subject>Genetic diversity</subject><subject>Geographical distribution</subject><subject>Germplasm</subject><subject>Grapes</subject><subject>Hybrid zones</subject><subject>Hybridization</subject><subject>Life Sciences</subject><subject>Markers</subject><subject>Mountains</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Plant Systematics/Taxonomy/Biogeography</subject><subject>Range extension</subject><subject>Research Article</subject><subject>Species</subject><subject>Species diversity</subject><subject>Vitis arizonica</subject><subject>Vitis cinerea</subject><subject>Volcanic belts</subject><issn>0925-9864</issn><issn>1573-5109</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>BENPR</sourceid><recordid>eNp9kL1OwzAURi0EEqXwAkyRmF3u9U9sj6gCilTEUmbLiZ3iqiTFToG-PYEgsTHd5ZzvSoeQS4QZAqjrjKAYo8CQAnJQFI7IBKXiVCKYYzIBwyQ1uhSn5CznDQAYVeoJma1eQrEObehjXfj4HlKO_aHomuIjbn2xTm4XchHb4jF8xro7JyeN2-Zw8Xun5PnudjVf0OXT_cP8ZklrXvKeOtBOG6cd91zIylehgkaCN7JhHhEbFB4UAAohNEclwcmqctIJGZhiik_J1bi7S93bPuTebrp9aoeXlpVMM0Sj5ECxkapTl3MKjd2l-OrSwSLY7y527GKHLvani4VB4qOUB7hdh_Q3_Y_1BTCOYyo</recordid><startdate>20220301</startdate><enddate>20220301</enddate><creator>Huerta-Acosta, Karla G.</creator><creator>Riaz, Summaira</creator><creator>Franco-Mora, Omar</creator><creator>Cruz-Castillo, Juan G.</creator><creator>Walker, M. 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Andrew</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c363t-a08a89a8a3d345bdbeb0f50d95f2d111f14d07001444831750a5bba5a45e27273</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Agriculture</topic><topic>Barriers</topic><topic>Biomedical and Life Sciences</topic><topic>Clustering</topic><topic>Discriminant analysis</topic><topic>Fruits</topic><topic>Gene flow</topic><topic>Genetic analysis</topic><topic>Genetic diversity</topic><topic>Geographical distribution</topic><topic>Germplasm</topic><topic>Grapes</topic><topic>Hybrid zones</topic><topic>Hybridization</topic><topic>Life Sciences</topic><topic>Markers</topic><topic>Mountains</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Plant Systematics/Taxonomy/Biogeography</topic><topic>Range extension</topic><topic>Research Article</topic><topic>Species</topic><topic>Species diversity</topic><topic>Vitis arizonica</topic><topic>Vitis cinerea</topic><topic>Volcanic belts</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Huerta-Acosta, Karla G.</creatorcontrib><creatorcontrib>Riaz, Summaira</creatorcontrib><creatorcontrib>Franco-Mora, Omar</creatorcontrib><creatorcontrib>Cruz-Castillo, Juan G.</creatorcontrib><creatorcontrib>Walker, M. 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Andrew</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The genetic diversity of wild grapes in Mexico</atitle><jtitle>Genetic resources and crop evolution</jtitle><stitle>Genet Resour Crop Evol</stitle><date>2022-03-01</date><risdate>2022</risdate><volume>69</volume><issue>3</issue><spage>1329</spage><epage>1347</epage><pages>1329-1347</pages><issn>0925-9864</issn><eissn>1573-5109</eissn><abstract>This is the first report evaluating the genetic diversity of Mexican grape species utilizing DNA-based markers to understand the distribution of grape species, and patterns of hybridization. The study utilized accessions maintained in three collections in Mexico, one in the USA and recently collected germplasm. Fifteen SSR markers were used to develop a fingerprint database to identify unique germplasm. Two different clustering analyses without prior population assignment, were used to identify groups that were verified by a Discriminant Analysis of Principal Components and a Principal Coordinate Analysis. Genetic diversity estimates were made across and within groups to validate the results obtained from the clustering analyses. Multiple clustering analyses and diversity parameters supported six genetic groups representing different geographic regions. The Northeastern group was the most diverse with a geographic range extending to Eastern and Central Mexico, while the Coahuila group was the least diverse.
Vitis arizonica
Engelm. and
Vitis cinerea
Engelm. ex Millardet were the most abundant species with many hybrid forms. We provide evidence that wild grape species in Mexico follow the physical barriers of mountain ranges like the Sierra Madre Oriental with an east–west divide and the Trans-Mexican Volcanic Belt as a corridor for gene flow among different grape species. Additional collections are required to fully understand the extent of hybridization and to clarify hybrid zones.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s10722-021-01307-0</doi><tpages>19</tpages><orcidid>https://orcid.org/0000-0001-5422-821X</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Agriculture Barriers Biomedical and Life Sciences Clustering Discriminant analysis Fruits Gene flow Genetic analysis Genetic diversity Geographical distribution Germplasm Grapes Hybrid zones Hybridization Life Sciences Markers Mountains Plant Genetics and Genomics Plant Physiology Plant Sciences Plant Systematics/Taxonomy/Biogeography Range extension Research Article Species Species diversity Vitis arizonica Vitis cinerea Volcanic belts |
title | The genetic diversity of wild grapes in Mexico |
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