Serum Raman spectroscopy combined with convolutional neural network for label‐free detection of echinococcosis
Early disease screening is of great significance to its prevention and treatment, and serum analysis is one of the important methods for early disease screening. In this paper, a portable spectrometer was used to collect serum Raman spectra of echinococcosis patients and healthy volunteers, and a on...
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Veröffentlicht in: | Journal of Raman spectroscopy 2022-02, Vol.53 (2), p.182-190 |
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description | Early disease screening is of great significance to its prevention and treatment, and serum analysis is one of the important methods for early disease screening. In this paper, a portable spectrometer was used to collect serum Raman spectra of echinococcosis patients and healthy volunteers, and a one‐dimensional convolutional neural network (CNN) was used to classify the two types of spectra. The average spectrum shows that the phenylalanine and carotene content in the serum of patients with echinococcosis is less than that in healthy volunteers, whereas the content of amino acids such as proline and tyrosine is higher. We built a CNN model to identify two types of spectra. First, the Kennard–Stone algorithm was used to divide the two types of spectra into a training set and a test set. Afterwards, the optimal hyperparameters of the model were determined by fivefold cross‐validation on the training set. Finally, the test set was used to evaluate the final effect of the model. The accuracy, sensitivity, and specificity of the test set on the model are 94.90%, 90.57%, and 97.11%, respectively. The receiver operating characteristic curve analysis further confirmed the excellent performance of the CNN in the classification of serum Raman spectra. The above results show that serum Raman spectroscopy combined with a one‐dimensional CNN algorithm has great potential in the early diagnosis of echinococcosis.
We used a 532‐nm laser source portable spectrometer to collect serum Raman spectra of healthy people and echinococcosis patients. A convolutional neural network was used to distinguish the two types of spectra. The results show that the convolutional neural network has great potential in the screening of echinococcosis. |
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We used a 532‐nm laser source portable spectrometer to collect serum Raman spectra of healthy people and echinococcosis patients. A convolutional neural network was used to distinguish the two types of spectra. The results show that the convolutional neural network has great potential in the screening of echinococcosis.</description><identifier>ISSN: 0377-0486</identifier><identifier>EISSN: 1097-4555</identifier><identifier>DOI: 10.1002/jrs.6283</identifier><language>eng</language><publisher>Bognor Regis: Wiley Subscription Services, Inc</publisher><subject>Algorithms ; Amino acids ; Artificial neural networks ; Carotene ; convolutional neural network (CNN) ; diagnosis ; Echinococcosis ; Medical screening ; Model accuracy ; Neural networks ; Patients ; Phenylalanine ; Proline ; Raman spectra ; Raman spectroscopy ; serum ; Spectroscopy ; Spectrum analysis ; Test sets ; Training ; Tyrosine</subject><ispartof>Journal of Raman spectroscopy, 2022-02, Vol.53 (2), p.182-190</ispartof><rights>2021 John Wiley & Sons, Ltd.</rights><rights>2022 John Wiley & Sons, Ltd.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2933-a14a80b4ef5d944c347cdb87960786576f175bf9ac3740af172882c096b204393</citedby><cites>FETCH-LOGICAL-c2933-a14a80b4ef5d944c347cdb87960786576f175bf9ac3740af172882c096b204393</cites><orcidid>0000-0001-5385-4235 ; 0000-0002-1351-0603</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fjrs.6283$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fjrs.6283$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids></links><search><creatorcontrib>Wu, Guohua</creatorcontrib><creatorcontrib>Chen, Peng</creatorcontrib><creatorcontrib>Zheng, Xiangxiang</creatorcontrib><creatorcontrib>Yin, Longfei</creatorcontrib><creatorcontrib>Lü, Guodong</creatorcontrib><title>Serum Raman spectroscopy combined with convolutional neural network for label‐free detection of echinococcosis</title><title>Journal of Raman spectroscopy</title><description>Early disease screening is of great significance to its prevention and treatment, and serum analysis is one of the important methods for early disease screening. In this paper, a portable spectrometer was used to collect serum Raman spectra of echinococcosis patients and healthy volunteers, and a one‐dimensional convolutional neural network (CNN) was used to classify the two types of spectra. The average spectrum shows that the phenylalanine and carotene content in the serum of patients with echinococcosis is less than that in healthy volunteers, whereas the content of amino acids such as proline and tyrosine is higher. We built a CNN model to identify two types of spectra. First, the Kennard–Stone algorithm was used to divide the two types of spectra into a training set and a test set. Afterwards, the optimal hyperparameters of the model were determined by fivefold cross‐validation on the training set. Finally, the test set was used to evaluate the final effect of the model. The accuracy, sensitivity, and specificity of the test set on the model are 94.90%, 90.57%, and 97.11%, respectively. The receiver operating characteristic curve analysis further confirmed the excellent performance of the CNN in the classification of serum Raman spectra. The above results show that serum Raman spectroscopy combined with a one‐dimensional CNN algorithm has great potential in the early diagnosis of echinococcosis.
We used a 532‐nm laser source portable spectrometer to collect serum Raman spectra of healthy people and echinococcosis patients. A convolutional neural network was used to distinguish the two types of spectra. The results show that the convolutional neural network has great potential in the screening of echinococcosis.</description><subject>Algorithms</subject><subject>Amino acids</subject><subject>Artificial neural networks</subject><subject>Carotene</subject><subject>convolutional neural network (CNN)</subject><subject>diagnosis</subject><subject>Echinococcosis</subject><subject>Medical screening</subject><subject>Model accuracy</subject><subject>Neural networks</subject><subject>Patients</subject><subject>Phenylalanine</subject><subject>Proline</subject><subject>Raman spectra</subject><subject>Raman spectroscopy</subject><subject>serum</subject><subject>Spectroscopy</subject><subject>Spectrum analysis</subject><subject>Test sets</subject><subject>Training</subject><subject>Tyrosine</subject><issn>0377-0486</issn><issn>1097-4555</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><recordid>eNp1kMtKAzEYhYMoWKvgIwTcuJmaSTK5LKV4pSC0ug6ZTEKnTidjMmPpzkfwGX0S09atq8OBj8P_fwBc5miSI4RvViFOGBbkCIxyJHlGi6I4BiNEOM8QFewUnMW4QghJyfIR6BY2DGs412vdwthZ0wcfje-20Ph1Wbe2gpu6X6bWfvpm6Gvf6ga2dgj76Dc-vEPnA2x0aZufr28XrIWV7dNSYqF30Jpl3XrjjfGxjufgxOkm2ou_HIO3-7vX6WM2e3l4mt7OMoMlIZnOqRaopNYVlaTUEMpNVQouGeKCFZy5nBelk9oQTpFODQuBDZKsxIgSScbg6rDbBf8x2NirlR9COj4qzDCTWFDJE3V9oEx6OwbrVBfqtQ5blSO186mST7XzmdDsgG7qxm7_5dTzfLHnfwGXDnkr</recordid><startdate>202202</startdate><enddate>202202</enddate><creator>Wu, Guohua</creator><creator>Chen, Peng</creator><creator>Zheng, Xiangxiang</creator><creator>Yin, Longfei</creator><creator>Lü, Guodong</creator><general>Wiley Subscription Services, Inc</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7U5</scope><scope>7U9</scope><scope>8BQ</scope><scope>8FD</scope><scope>F28</scope><scope>FR3</scope><scope>H8D</scope><scope>H8G</scope><scope>H94</scope><scope>JG9</scope><scope>JQ2</scope><scope>KR7</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>P64</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0001-5385-4235</orcidid><orcidid>https://orcid.org/0000-0002-1351-0603</orcidid></search><sort><creationdate>202202</creationdate><title>Serum Raman spectroscopy combined with convolutional neural network for label‐free detection of echinococcosis</title><author>Wu, Guohua ; Chen, Peng ; Zheng, Xiangxiang ; Yin, Longfei ; Lü, Guodong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2933-a14a80b4ef5d944c347cdb87960786576f175bf9ac3740af172882c096b204393</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Algorithms</topic><topic>Amino acids</topic><topic>Artificial neural networks</topic><topic>Carotene</topic><topic>convolutional neural network (CNN)</topic><topic>diagnosis</topic><topic>Echinococcosis</topic><topic>Medical screening</topic><topic>Model accuracy</topic><topic>Neural networks</topic><topic>Patients</topic><topic>Phenylalanine</topic><topic>Proline</topic><topic>Raman spectra</topic><topic>Raman spectroscopy</topic><topic>serum</topic><topic>Spectroscopy</topic><topic>Spectrum analysis</topic><topic>Test sets</topic><topic>Training</topic><topic>Tyrosine</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wu, Guohua</creatorcontrib><creatorcontrib>Chen, Peng</creatorcontrib><creatorcontrib>Zheng, Xiangxiang</creatorcontrib><creatorcontrib>Yin, Longfei</creatorcontrib><creatorcontrib>Lü, Guodong</creatorcontrib><collection>CrossRef</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Copper Technical Reference Library</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Journal of Raman spectroscopy</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wu, Guohua</au><au>Chen, Peng</au><au>Zheng, Xiangxiang</au><au>Yin, Longfei</au><au>Lü, Guodong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Serum Raman spectroscopy combined with convolutional neural network for label‐free detection of echinococcosis</atitle><jtitle>Journal of Raman spectroscopy</jtitle><date>2022-02</date><risdate>2022</risdate><volume>53</volume><issue>2</issue><spage>182</spage><epage>190</epage><pages>182-190</pages><issn>0377-0486</issn><eissn>1097-4555</eissn><abstract>Early disease screening is of great significance to its prevention and treatment, and serum analysis is one of the important methods for early disease screening. In this paper, a portable spectrometer was used to collect serum Raman spectra of echinococcosis patients and healthy volunteers, and a one‐dimensional convolutional neural network (CNN) was used to classify the two types of spectra. The average spectrum shows that the phenylalanine and carotene content in the serum of patients with echinococcosis is less than that in healthy volunteers, whereas the content of amino acids such as proline and tyrosine is higher. We built a CNN model to identify two types of spectra. First, the Kennard–Stone algorithm was used to divide the two types of spectra into a training set and a test set. Afterwards, the optimal hyperparameters of the model were determined by fivefold cross‐validation on the training set. Finally, the test set was used to evaluate the final effect of the model. The accuracy, sensitivity, and specificity of the test set on the model are 94.90%, 90.57%, and 97.11%, respectively. The receiver operating characteristic curve analysis further confirmed the excellent performance of the CNN in the classification of serum Raman spectra. The above results show that serum Raman spectroscopy combined with a one‐dimensional CNN algorithm has great potential in the early diagnosis of echinococcosis.
We used a 532‐nm laser source portable spectrometer to collect serum Raman spectra of healthy people and echinococcosis patients. A convolutional neural network was used to distinguish the two types of spectra. The results show that the convolutional neural network has great potential in the screening of echinococcosis.</abstract><cop>Bognor Regis</cop><pub>Wiley Subscription Services, Inc</pub><doi>10.1002/jrs.6283</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0001-5385-4235</orcidid><orcidid>https://orcid.org/0000-0002-1351-0603</orcidid></addata></record> |
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subjects | Algorithms Amino acids Artificial neural networks Carotene convolutional neural network (CNN) diagnosis Echinococcosis Medical screening Model accuracy Neural networks Patients Phenylalanine Proline Raman spectra Raman spectroscopy serum Spectroscopy Spectrum analysis Test sets Training Tyrosine |
title | Serum Raman spectroscopy combined with convolutional neural network for label‐free detection of echinococcosis |
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