ESTIMATING OPHIOGLOSSACEAE FERN GENOME SIZE USING HERBARIUM SPORES
PremiseThe great variation of genome size (C‐value) across land plants is linked to various adaptative features. Flow cytometry (FCM), the standard approach to estimating C‐values, relies mostly on fresh materials, performing poorly when used with herbarium materials. No fern C‐value reports have be...
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creator | Li‐Yaung Kuo Tang, Sheng Kai Tzu‐Tong Kao Ebihara, Atsushi Fawcett, Susan Min‐Chien Hsiao Shinohara, Wataru Dauphin, Benjamin |
description | PremiseThe great variation of genome size (C‐value) across land plants is linked to various adaptative features. Flow cytometry (FCM), the standard approach to estimating C‐values, relies mostly on fresh materials, performing poorly when used with herbarium materials. No fern C‐value reports have been derived from herbarium specimens; however, the herbarium spores of some ferns remain highly viable for decades and are thus promising for further investigation. To explore this possibility, we evaluated herbarium spore collections of Ophioglossaceae ferns using FCM.MethodsFlow cytometry was conducted on 24 spore samples, representing eight of the 12 genera of the Ophioglossaceae, using specimens ranging in age from 2.6 to 111 years obtained from five herbaria.ResultsRegardless of the genus or the source herbarium, high‐quality C‐value data were generated from 17 samples, with the oldest being 26 years old. Estimates of the C‐values from sporophytic tissues of known ploidy did not reveal any evidence of apomixis for the species surveyed here. We also detected a pronounced genome downsizing in Sceptridium polyploids.DiscussionThe recent success of FCM for C‐value estimation using spores provides a much more convenient method of utilizing “dry” refrigerated materials. We demonstrate here that herbarium spores of some ferns are also promising for this use, even for older specimens. |
doi_str_mv | 10.1002/aps3.11452 |
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Flow cytometry (FCM), the standard approach to estimating C‐values, relies mostly on fresh materials, performing poorly when used with herbarium materials. No fern C‐value reports have been derived from herbarium specimens; however, the herbarium spores of some ferns remain highly viable for decades and are thus promising for further investigation. To explore this possibility, we evaluated herbarium spore collections of Ophioglossaceae ferns using FCM.MethodsFlow cytometry was conducted on 24 spore samples, representing eight of the 12 genera of the Ophioglossaceae, using specimens ranging in age from 2.6 to 111 years obtained from five herbaria.ResultsRegardless of the genus or the source herbarium, high‐quality C‐value data were generated from 17 samples, with the oldest being 26 years old. Estimates of the C‐values from sporophytic tissues of known ploidy did not reveal any evidence of apomixis for the species surveyed here. We also detected a pronounced genome downsizing in Sceptridium polyploids.DiscussionThe recent success of FCM for C‐value estimation using spores provides a much more convenient method of utilizing “dry” refrigerated materials. We demonstrate here that herbarium spores of some ferns are also promising for this use, even for older specimens.</description><identifier>EISSN: 2168-0450</identifier><identifier>DOI: 10.1002/aps3.11452</identifier><language>eng</language><publisher>Hoboken: John Wiley & Sons, Inc</publisher><subject>Apomixis ; Cell division ; Collections ; Ferns ; Flow cytometry ; Genomes ; Ophioglossaceae ; Plant sciences ; Ploidy ; Polyploidy ; Spores</subject><ispartof>Applications in plant sciences, 2021-11, Vol.9 (11-12)</ispartof><rights>2021. This work is published under http://creativecommons.org/licenses/by-nc/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,860,27903,27904</link.rule.ids></links><search><creatorcontrib>Li‐Yaung Kuo</creatorcontrib><creatorcontrib>Tang, Sheng Kai</creatorcontrib><creatorcontrib>Tzu‐Tong Kao</creatorcontrib><creatorcontrib>Ebihara, Atsushi</creatorcontrib><creatorcontrib>Fawcett, Susan</creatorcontrib><creatorcontrib>Min‐Chien Hsiao</creatorcontrib><creatorcontrib>Shinohara, Wataru</creatorcontrib><creatorcontrib>Dauphin, Benjamin</creatorcontrib><title>ESTIMATING OPHIOGLOSSACEAE FERN GENOME SIZE USING HERBARIUM SPORES</title><title>Applications in plant sciences</title><description>PremiseThe great variation of genome size (C‐value) across land plants is linked to various adaptative features. Flow cytometry (FCM), the standard approach to estimating C‐values, relies mostly on fresh materials, performing poorly when used with herbarium materials. No fern C‐value reports have been derived from herbarium specimens; however, the herbarium spores of some ferns remain highly viable for decades and are thus promising for further investigation. To explore this possibility, we evaluated herbarium spore collections of Ophioglossaceae ferns using FCM.MethodsFlow cytometry was conducted on 24 spore samples, representing eight of the 12 genera of the Ophioglossaceae, using specimens ranging in age from 2.6 to 111 years obtained from five herbaria.ResultsRegardless of the genus or the source herbarium, high‐quality C‐value data were generated from 17 samples, with the oldest being 26 years old. Estimates of the C‐values from sporophytic tissues of known ploidy did not reveal any evidence of apomixis for the species surveyed here. We also detected a pronounced genome downsizing in Sceptridium polyploids.DiscussionThe recent success of FCM for C‐value estimation using spores provides a much more convenient method of utilizing “dry” refrigerated materials. We demonstrate here that herbarium spores of some ferns are also promising for this use, even for older specimens.</description><subject>Apomixis</subject><subject>Cell division</subject><subject>Collections</subject><subject>Ferns</subject><subject>Flow cytometry</subject><subject>Genomes</subject><subject>Ophioglossaceae</subject><subject>Plant sciences</subject><subject>Ploidy</subject><subject>Polyploidy</subject><subject>Spores</subject><issn>2168-0450</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNikELgjAYhkcQJOWlXzDorG1zih5VvnSQTja9dBEPdpBIc_n_M-gH9FxeeN4HoSMlLiWEnbvJeC6l3GcbZDEahA7hPtkh25iBrISririFEtC1KOJalBmWVS5kdpVaxynEgC-gSpxBKQvAWtwAN_qb5aCSWImmwLqSCvQBbe_dw_T2b_fodIE6zZ1pHl9Lb97tMC7zc71aFpCQB4RFkfdf9QHiwzes</recordid><startdate>20211101</startdate><enddate>20211101</enddate><creator>Li‐Yaung Kuo</creator><creator>Tang, Sheng Kai</creator><creator>Tzu‐Tong Kao</creator><creator>Ebihara, Atsushi</creator><creator>Fawcett, Susan</creator><creator>Min‐Chien Hsiao</creator><creator>Shinohara, Wataru</creator><creator>Dauphin, Benjamin</creator><general>John Wiley & Sons, Inc</general><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope></search><sort><creationdate>20211101</creationdate><title>ESTIMATING OPHIOGLOSSACEAE FERN GENOME SIZE USING HERBARIUM SPORES</title><author>Li‐Yaung Kuo ; Tang, Sheng Kai ; Tzu‐Tong Kao ; Ebihara, Atsushi ; Fawcett, Susan ; Min‐Chien Hsiao ; Shinohara, Wataru ; Dauphin, Benjamin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-proquest_journals_26084602993</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Apomixis</topic><topic>Cell division</topic><topic>Collections</topic><topic>Ferns</topic><topic>Flow cytometry</topic><topic>Genomes</topic><topic>Ophioglossaceae</topic><topic>Plant sciences</topic><topic>Ploidy</topic><topic>Polyploidy</topic><topic>Spores</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li‐Yaung Kuo</creatorcontrib><creatorcontrib>Tang, Sheng Kai</creatorcontrib><creatorcontrib>Tzu‐Tong Kao</creatorcontrib><creatorcontrib>Ebihara, Atsushi</creatorcontrib><creatorcontrib>Fawcett, Susan</creatorcontrib><creatorcontrib>Min‐Chien Hsiao</creatorcontrib><creatorcontrib>Shinohara, Wataru</creatorcontrib><creatorcontrib>Dauphin, Benjamin</creatorcontrib><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><jtitle>Applications in plant sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li‐Yaung Kuo</au><au>Tang, Sheng Kai</au><au>Tzu‐Tong Kao</au><au>Ebihara, Atsushi</au><au>Fawcett, Susan</au><au>Min‐Chien Hsiao</au><au>Shinohara, Wataru</au><au>Dauphin, Benjamin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>ESTIMATING OPHIOGLOSSACEAE FERN GENOME SIZE USING HERBARIUM SPORES</atitle><jtitle>Applications in plant sciences</jtitle><date>2021-11-01</date><risdate>2021</risdate><volume>9</volume><issue>11-12</issue><eissn>2168-0450</eissn><abstract>PremiseThe great variation of genome size (C‐value) across land plants is linked to various adaptative features. Flow cytometry (FCM), the standard approach to estimating C‐values, relies mostly on fresh materials, performing poorly when used with herbarium materials. No fern C‐value reports have been derived from herbarium specimens; however, the herbarium spores of some ferns remain highly viable for decades and are thus promising for further investigation. To explore this possibility, we evaluated herbarium spore collections of Ophioglossaceae ferns using FCM.MethodsFlow cytometry was conducted on 24 spore samples, representing eight of the 12 genera of the Ophioglossaceae, using specimens ranging in age from 2.6 to 111 years obtained from five herbaria.ResultsRegardless of the genus or the source herbarium, high‐quality C‐value data were generated from 17 samples, with the oldest being 26 years old. Estimates of the C‐values from sporophytic tissues of known ploidy did not reveal any evidence of apomixis for the species surveyed here. We also detected a pronounced genome downsizing in Sceptridium polyploids.DiscussionThe recent success of FCM for C‐value estimation using spores provides a much more convenient method of utilizing “dry” refrigerated materials. We demonstrate here that herbarium spores of some ferns are also promising for this use, even for older specimens.</abstract><cop>Hoboken</cop><pub>John Wiley & Sons, Inc</pub><doi>10.1002/aps3.11452</doi><oa>free_for_read</oa></addata></record> |
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subjects | Apomixis Cell division Collections Ferns Flow cytometry Genomes Ophioglossaceae Plant sciences Ploidy Polyploidy Spores |
title | ESTIMATING OPHIOGLOSSACEAE FERN GENOME SIZE USING HERBARIUM SPORES |
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