Genome sequence analysis of Cronobacter phage PF-CE2 and proposal of a new species in the genus Pseudotevenvirus
The genome of a Cronobacter sakazakii M1 phage named PF-CE2 was characterized in this work, and a new species named " Cronobacter virus PF-CE2 ", in the genus Pseudotevenvirus of the subfamily Tevenvirinae of the family Myoviridae is proposed. The Gp190 gene of phage PF-CE2 is predicted to...
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| Veröffentlicht in: | Archives of virology 2021-12, Vol.166 (12), p.3467-3472 |
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| creator | Xiao, Mengshi Ren, Xinmiao Yu, Ying Sun, Han Mou, Haijin Fu, Xiaodan |
| description | The genome of a
Cronobacter sakazakii
M1 phage named PF-CE2 was characterized in this work, and a new species named "
Cronobacter virus PF-CE2
", in the genus
Pseudotevenvirus
of the subfamily
Tevenvirinae
of the family
Myoviridae
is proposed. The
Gp190
gene of phage PF-CE2 is predicted to encode a bacteriophage-borne glycanase that is capable of degrading fucose-containing exopolysaccharides produced by
C. sakazakii
M1. Furthermore, we propose changing the taxonomic status of eight additional phages based on nucleotide sequence comparisons. This work provides a theoretical basis for subsequent heterologous expression of the phage PF-CE2 glycanase and provides an important reference for the preservation and sharing of these phages. |
| doi_str_mv | 10.1007/s00705-021-05255-z |
| format | Article |
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Cronobacter sakazakii
M1 phage named PF-CE2 was characterized in this work, and a new species named "
Cronobacter virus PF-CE2
", in the genus
Pseudotevenvirus
of the subfamily
Tevenvirinae
of the family
Myoviridae
is proposed. The
Gp190
gene of phage PF-CE2 is predicted to encode a bacteriophage-borne glycanase that is capable of degrading fucose-containing exopolysaccharides produced by
C. sakazakii
M1. Furthermore, we propose changing the taxonomic status of eight additional phages based on nucleotide sequence comparisons. This work provides a theoretical basis for subsequent heterologous expression of the phage PF-CE2 glycanase and provides an important reference for the preservation and sharing of these phages.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-021-05255-z</identifier><identifier>PMID: 34601635</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Annotated Sequence Record ; Bacteriophages - genetics ; Biomedical and Life Sciences ; Biomedicine ; Cronobacter ; Cronobacter - genetics ; Cronobacter sakazakii - genetics ; Exopolysaccharides ; Genome, Viral ; Genomes ; Infectious Diseases ; Medical Microbiology ; Myoviridae - genetics ; New species ; Nucleotide sequence ; Phages ; Sequence Analysis ; Virology</subject><ispartof>Archives of virology, 2021-12, Vol.166 (12), p.3467-3472</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature 2021</rights><rights>2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.</rights><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature 2021.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-947b2f3e935de6986d55421f28efaadf3904ae6de8b6a4abb920fe1dbb3bda133</citedby><cites>FETCH-LOGICAL-c375t-947b2f3e935de6986d55421f28efaadf3904ae6de8b6a4abb920fe1dbb3bda133</cites><orcidid>0000-0003-3667-1562</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-021-05255-z$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-021-05255-z$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34601635$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Xiao, Mengshi</creatorcontrib><creatorcontrib>Ren, Xinmiao</creatorcontrib><creatorcontrib>Yu, Ying</creatorcontrib><creatorcontrib>Sun, Han</creatorcontrib><creatorcontrib>Mou, Haijin</creatorcontrib><creatorcontrib>Fu, Xiaodan</creatorcontrib><title>Genome sequence analysis of Cronobacter phage PF-CE2 and proposal of a new species in the genus Pseudotevenvirus</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>The genome of a
Cronobacter sakazakii
M1 phage named PF-CE2 was characterized in this work, and a new species named "
Cronobacter virus PF-CE2
", in the genus
Pseudotevenvirus
of the subfamily
Tevenvirinae
of the family
Myoviridae
is proposed. The
Gp190
gene of phage PF-CE2 is predicted to encode a bacteriophage-borne glycanase that is capable of degrading fucose-containing exopolysaccharides produced by
C. sakazakii
M1. Furthermore, we propose changing the taxonomic status of eight additional phages based on nucleotide sequence comparisons. This work provides a theoretical basis for subsequent heterologous expression of the phage PF-CE2 glycanase and provides an important reference for the preservation and sharing of these phages.</description><subject>Annotated Sequence Record</subject><subject>Bacteriophages - genetics</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Cronobacter</subject><subject>Cronobacter - genetics</subject><subject>Cronobacter sakazakii - genetics</subject><subject>Exopolysaccharides</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Infectious Diseases</subject><subject>Medical Microbiology</subject><subject>Myoviridae - genetics</subject><subject>New species</subject><subject>Nucleotide sequence</subject><subject>Phages</subject><subject>Sequence Analysis</subject><subject>Virology</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU1v1DAQhi0EotvCH-CALHHhYvBn4hzRqh9IlegBzpYdT7apsnbwJEXtr8fLFpA4cLElzzOvPX4IeSP4B8F5-xHrwg3jUjBupDHs8RnZCK0ks21nn5MNV1wz23B7Qk4R7zivB8q8JCdKN1w0ymzIfAkp74EifF8h9UB98tMDjkjzQLclpxx8v0Ch863fAb25YNtzWaFI55LnjH46gJ4m-EFxhn4EpGOiyy3QHaQV6Q3CGvMC95Dux7LiK_Ji8BPC66f9jHy7OP-6vWLXXy4_bz9ds161ZmGdboMcFHTKRGg620RjtBSDtDB4HwfVce2hiWBD47UPoZN8ABFDUCF6odQZeX_Mre-so-Hi9iP2ME0-QV7RSdN2vJNK6Yq--we9y2up_1CphkslrbYHSh6pvmTEAoOby7j35cEJ7g4-3NGHqz7cLx_usTa9fYpewx7in5bfAiqgjgDWUtpB-Xv3f2J_AqL2lxE</recordid><startdate>20211201</startdate><enddate>20211201</enddate><creator>Xiao, Mengshi</creator><creator>Ren, Xinmiao</creator><creator>Yu, Ying</creator><creator>Sun, Han</creator><creator>Mou, Haijin</creator><creator>Fu, Xiaodan</creator><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-3667-1562</orcidid></search><sort><creationdate>20211201</creationdate><title>Genome sequence analysis of Cronobacter phage PF-CE2 and proposal of a new species in the genus Pseudotevenvirus</title><author>Xiao, Mengshi ; Ren, Xinmiao ; Yu, Ying ; Sun, Han ; Mou, Haijin ; Fu, Xiaodan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-947b2f3e935de6986d55421f28efaadf3904ae6de8b6a4abb920fe1dbb3bda133</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Annotated Sequence Record</topic><topic>Bacteriophages - genetics</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Cronobacter</topic><topic>Cronobacter - genetics</topic><topic>Cronobacter sakazakii - genetics</topic><topic>Exopolysaccharides</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Infectious Diseases</topic><topic>Medical Microbiology</topic><topic>Myoviridae - genetics</topic><topic>New species</topic><topic>Nucleotide sequence</topic><topic>Phages</topic><topic>Sequence Analysis</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xiao, Mengshi</creatorcontrib><creatorcontrib>Ren, Xinmiao</creatorcontrib><creatorcontrib>Yu, Ying</creatorcontrib><creatorcontrib>Sun, Han</creatorcontrib><creatorcontrib>Mou, Haijin</creatorcontrib><creatorcontrib>Fu, Xiaodan</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xiao, Mengshi</au><au>Ren, Xinmiao</au><au>Yu, Ying</au><au>Sun, Han</au><au>Mou, Haijin</au><au>Fu, Xiaodan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome sequence analysis of Cronobacter phage PF-CE2 and proposal of a new species in the genus Pseudotevenvirus</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2021-12-01</date><risdate>2021</risdate><volume>166</volume><issue>12</issue><spage>3467</spage><epage>3472</epage><pages>3467-3472</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>The genome of a
Cronobacter sakazakii
M1 phage named PF-CE2 was characterized in this work, and a new species named "
Cronobacter virus PF-CE2
", in the genus
Pseudotevenvirus
of the subfamily
Tevenvirinae
of the family
Myoviridae
is proposed. The
Gp190
gene of phage PF-CE2 is predicted to encode a bacteriophage-borne glycanase that is capable of degrading fucose-containing exopolysaccharides produced by
C. sakazakii
M1. Furthermore, we propose changing the taxonomic status of eight additional phages based on nucleotide sequence comparisons. This work provides a theoretical basis for subsequent heterologous expression of the phage PF-CE2 glycanase and provides an important reference for the preservation and sharing of these phages.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>34601635</pmid><doi>10.1007/s00705-021-05255-z</doi><tpages>6</tpages><orcidid>https://orcid.org/0000-0003-3667-1562</orcidid></addata></record> |
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| ispartof | Archives of virology, 2021-12, Vol.166 (12), p.3467-3472 |
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| source | MEDLINE; SpringerLink Journals - AutoHoldings |
| subjects | Annotated Sequence Record Bacteriophages - genetics Biomedical and Life Sciences Biomedicine Cronobacter Cronobacter - genetics Cronobacter sakazakii - genetics Exopolysaccharides Genome, Viral Genomes Infectious Diseases Medical Microbiology Myoviridae - genetics New species Nucleotide sequence Phages Sequence Analysis Virology |
| title | Genome sequence analysis of Cronobacter phage PF-CE2 and proposal of a new species in the genus Pseudotevenvirus |
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