Microsatellite marker-based genetic diversity of tropical-adapted shrunken-2 maize inbred lines and its relationship with normal endosperm inbred lines of known heterotic classification
Knowledge of the genetic diversity and relationships among maize inbred lines can facilitate germplasm management and plant breeding programmes. The study investigated the level of genetic diversity among S 6 lines developed from a tropical-adapted shrunken-2 ( sh-2 ) maize population and their rela...
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creator | Iboyi, J. E. Abe, A. Adetimirin, V. O. |
description | Knowledge of the genetic diversity and relationships among maize inbred lines can facilitate germplasm management and plant breeding programmes. The study investigated the level of genetic diversity among
S
6
lines developed from a tropical-adapted
shrunken-2
(
sh-2
) maize population and their relationship with normal endosperm tropical inbred lines of known heterotic groups. Ninety-one
sh-2
maize inbred lines (UI1-UI91) developed in the University of Ibadan super-sweet Maize Breeding Programme were genotyped at 30 simple sequence repeat (SSR) loci, alongside five normal endosperm maize inbred lines viz. TZi3, TZi4, TZi10, TZi12 and TZi15, four of which belong to two heterotic groups. Twenty-three SSR markers were polymorphic and detected a total of 61 alleles, with a range of 2–7 and an average of 2.65 alleles per locus. The polymorphic information content ranged from 0.12 in bnlg1937 to 0.77 in phi126, with an average of 0.36. The gene diversity (
H
e
) averaged 0.43. Cluster analysis resulted in five groups consisting of 16, 36, 17, 23 and 3 inbred lines, with one
sh-2
line ungrouped. TZi 12 and TZi 15, both of which are of the same heterotic group, clustered with TZi 3 of another heterotic group. Considerable genetic diversity exists among the 96 inbred lines. Only two of the five normal endosperm lines shared clusters with the
sh-2
lines. The clustering of the normal endosperm inbred lines is not related to their established heterotic patterns. Inbred lines in two clusters offer the possibility of guiding the exploitation of heterosis among the
sh-2
lines. |
doi_str_mv | 10.1017/S1479262120000489 |
format | Article |
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S
6
lines developed from a tropical-adapted
shrunken-2
(
sh-2
) maize population and their relationship with normal endosperm tropical inbred lines of known heterotic groups. Ninety-one
sh-2
maize inbred lines (UI1-UI91) developed in the University of Ibadan super-sweet Maize Breeding Programme were genotyped at 30 simple sequence repeat (SSR) loci, alongside five normal endosperm maize inbred lines viz. TZi3, TZi4, TZi10, TZi12 and TZi15, four of which belong to two heterotic groups. Twenty-three SSR markers were polymorphic and detected a total of 61 alleles, with a range of 2–7 and an average of 2.65 alleles per locus. The polymorphic information content ranged from 0.12 in bnlg1937 to 0.77 in phi126, with an average of 0.36. The gene diversity (
H
e
) averaged 0.43. Cluster analysis resulted in five groups consisting of 16, 36, 17, 23 and 3 inbred lines, with one
sh-2
line ungrouped. TZi 12 and TZi 15, both of which are of the same heterotic group, clustered with TZi 3 of another heterotic group. Considerable genetic diversity exists among the 96 inbred lines. Only two of the five normal endosperm lines shared clusters with the
sh-2
lines. The clustering of the normal endosperm inbred lines is not related to their established heterotic patterns. Inbred lines in two clusters offer the possibility of guiding the exploitation of heterosis among the
sh-2
lines.</description><identifier>ISSN: 1479-2621</identifier><identifier>EISSN: 1479-263X</identifier><identifier>DOI: 10.1017/S1479262120000489</identifier><language>eng</language><publisher>Cambridge: Cambridge University Press</publisher><subject>Alleles ; Cluster analysis ; Clustering ; Corn ; Crops ; Endosperm ; Genetic diversity ; Genetic markers ; Germplasm ; Heterosis ; Inbreeding ; Loci ; Markers ; Microsatellites ; Molecular biology ; Plant breeding ; Population ; Reagents ; Seeds</subject><ispartof>Plant genetic resources: characterization and utilization, 2020-12, Vol.18 (6), p.454-461</ispartof><rights>Copyright © The Author(s), 2021. Published by Cambridge University Press on behalf of NIAB</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c273t-b994cf6849cc052880451a31120483eda2fa3769c1f5fd2fdd5be4d566eadba63</citedby><cites>FETCH-LOGICAL-c273t-b994cf6849cc052880451a31120483eda2fa3769c1f5fd2fdd5be4d566eadba63</cites><orcidid>0000-0001-8434-6110</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Iboyi, J. E.</creatorcontrib><creatorcontrib>Abe, A.</creatorcontrib><creatorcontrib>Adetimirin, V. O.</creatorcontrib><title>Microsatellite marker-based genetic diversity of tropical-adapted shrunken-2 maize inbred lines and its relationship with normal endosperm inbred lines of known heterotic classification</title><title>Plant genetic resources: characterization and utilization</title><description>Knowledge of the genetic diversity and relationships among maize inbred lines can facilitate germplasm management and plant breeding programmes. The study investigated the level of genetic diversity among
S
6
lines developed from a tropical-adapted
shrunken-2
(
sh-2
) maize population and their relationship with normal endosperm tropical inbred lines of known heterotic groups. Ninety-one
sh-2
maize inbred lines (UI1-UI91) developed in the University of Ibadan super-sweet Maize Breeding Programme were genotyped at 30 simple sequence repeat (SSR) loci, alongside five normal endosperm maize inbred lines viz. TZi3, TZi4, TZi10, TZi12 and TZi15, four of which belong to two heterotic groups. Twenty-three SSR markers were polymorphic and detected a total of 61 alleles, with a range of 2–7 and an average of 2.65 alleles per locus. The polymorphic information content ranged from 0.12 in bnlg1937 to 0.77 in phi126, with an average of 0.36. The gene diversity (
H
e
) averaged 0.43. Cluster analysis resulted in five groups consisting of 16, 36, 17, 23 and 3 inbred lines, with one
sh-2
line ungrouped. TZi 12 and TZi 15, both of which are of the same heterotic group, clustered with TZi 3 of another heterotic group. Considerable genetic diversity exists among the 96 inbred lines. Only two of the five normal endosperm lines shared clusters with the
sh-2
lines. The clustering of the normal endosperm inbred lines is not related to their established heterotic patterns. Inbred lines in two clusters offer the possibility of guiding the exploitation of heterosis among the
sh-2
lines.</description><subject>Alleles</subject><subject>Cluster analysis</subject><subject>Clustering</subject><subject>Corn</subject><subject>Crops</subject><subject>Endosperm</subject><subject>Genetic diversity</subject><subject>Genetic markers</subject><subject>Germplasm</subject><subject>Heterosis</subject><subject>Inbreeding</subject><subject>Loci</subject><subject>Markers</subject><subject>Microsatellites</subject><subject>Molecular biology</subject><subject>Plant breeding</subject><subject>Population</subject><subject>Reagents</subject><subject>Seeds</subject><issn>1479-2621</issn><issn>1479-263X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNplUUtLAzEQDqJgrf4AbwHPq0n2fRTxBRUPKnhbssnEpk2TNUkt9Z_578xSEcS5zDB8j-EbhE4pOaeE1hdPtKhbVjHKSKqiaffQZFxlrMpf939nRg_RUQgLQlhZ1-UEfT1o4V3gEYzREfCK-yX4rOcBJH4DC1ELLPUH-KDjFjuFo3eDFtxkXPIhJlSY-7Vdgs1YYutPwNr2Pu2NthAwtxLrGLAHw6N2Nsz1gDc6zrF1fsUNBitdGMCv_vKS09K6jcVziODdeIYwPAStkvkodIwOFDcBTn76FL3cXD9f3WWzx9v7q8tZJlidx6xv20KoqilaIUjJmoYUJeU5TUEVTQ6SM8XzumoFVaWSTElZ9lDIsqqAy55X-RSd7XQH797XEGK3cGtvk2XHyoZWDSHNiKI71Jhm8KC6wesU5rajpBs_1P37UP4NNoKJOg</recordid><startdate>202012</startdate><enddate>202012</enddate><creator>Iboyi, J. E.</creator><creator>Abe, A.</creator><creator>Adetimirin, V. O.</creator><general>Cambridge University Press</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0001-8434-6110</orcidid></search><sort><creationdate>202012</creationdate><title>Microsatellite marker-based genetic diversity of tropical-adapted shrunken-2 maize inbred lines and its relationship with normal endosperm inbred lines of known heterotic classification</title><author>Iboyi, J. E. ; Abe, A. ; Adetimirin, V. O.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c273t-b994cf6849cc052880451a31120483eda2fa3769c1f5fd2fdd5be4d566eadba63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Alleles</topic><topic>Cluster analysis</topic><topic>Clustering</topic><topic>Corn</topic><topic>Crops</topic><topic>Endosperm</topic><topic>Genetic diversity</topic><topic>Genetic markers</topic><topic>Germplasm</topic><topic>Heterosis</topic><topic>Inbreeding</topic><topic>Loci</topic><topic>Markers</topic><topic>Microsatellites</topic><topic>Molecular biology</topic><topic>Plant breeding</topic><topic>Population</topic><topic>Reagents</topic><topic>Seeds</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Iboyi, J. E.</creatorcontrib><creatorcontrib>Abe, A.</creatorcontrib><creatorcontrib>Adetimirin, V. O.</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><jtitle>Plant genetic resources: characterization and utilization</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Iboyi, J. E.</au><au>Abe, A.</au><au>Adetimirin, V. O.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Microsatellite marker-based genetic diversity of tropical-adapted shrunken-2 maize inbred lines and its relationship with normal endosperm inbred lines of known heterotic classification</atitle><jtitle>Plant genetic resources: characterization and utilization</jtitle><date>2020-12</date><risdate>2020</risdate><volume>18</volume><issue>6</issue><spage>454</spage><epage>461</epage><pages>454-461</pages><issn>1479-2621</issn><eissn>1479-263X</eissn><abstract>Knowledge of the genetic diversity and relationships among maize inbred lines can facilitate germplasm management and plant breeding programmes. The study investigated the level of genetic diversity among
S
6
lines developed from a tropical-adapted
shrunken-2
(
sh-2
) maize population and their relationship with normal endosperm tropical inbred lines of known heterotic groups. Ninety-one
sh-2
maize inbred lines (UI1-UI91) developed in the University of Ibadan super-sweet Maize Breeding Programme were genotyped at 30 simple sequence repeat (SSR) loci, alongside five normal endosperm maize inbred lines viz. TZi3, TZi4, TZi10, TZi12 and TZi15, four of which belong to two heterotic groups. Twenty-three SSR markers were polymorphic and detected a total of 61 alleles, with a range of 2–7 and an average of 2.65 alleles per locus. The polymorphic information content ranged from 0.12 in bnlg1937 to 0.77 in phi126, with an average of 0.36. The gene diversity (
H
e
) averaged 0.43. Cluster analysis resulted in five groups consisting of 16, 36, 17, 23 and 3 inbred lines, with one
sh-2
line ungrouped. TZi 12 and TZi 15, both of which are of the same heterotic group, clustered with TZi 3 of another heterotic group. Considerable genetic diversity exists among the 96 inbred lines. Only two of the five normal endosperm lines shared clusters with the
sh-2
lines. The clustering of the normal endosperm inbred lines is not related to their established heterotic patterns. Inbred lines in two clusters offer the possibility of guiding the exploitation of heterosis among the
sh-2
lines.</abstract><cop>Cambridge</cop><pub>Cambridge University Press</pub><doi>10.1017/S1479262120000489</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0001-8434-6110</orcidid></addata></record> |
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source | Cambridge University Press Journals Complete |
subjects | Alleles Cluster analysis Clustering Corn Crops Endosperm Genetic diversity Genetic markers Germplasm Heterosis Inbreeding Loci Markers Microsatellites Molecular biology Plant breeding Population Reagents Seeds |
title | Microsatellite marker-based genetic diversity of tropical-adapted shrunken-2 maize inbred lines and its relationship with normal endosperm inbred lines of known heterotic classification |
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