Evolutionary history of Heptapteridae catfishes using ultraconserved elements (Teleostei, Siluriformes)
Heptapteridae is composed of 228 valid species allocated in 24 genera, making it the most diverse family within superfamily Pimelodoidea, a clade endemic to the Neotropical freshwaters. Heptapterids are widely distributed from southern Mexico to the Pampas of Argentina and occupy a variety of habita...
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Veröffentlicht in: | Zoologica scripta 2021-09, Vol.50 (5), p.543-554 |
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creator | Silva, Gabriel S. C. Roxo, Fábio F. Melo, Bruno F. Ochoa, Luz E. Bockmann, Flávio A. Sabaj, Mark H. Jerep, Fernando C. Foresti, Fausto Benine, Ricardo C. Oliveira, Claudio |
description | Heptapteridae is composed of 228 valid species allocated in 24 genera, making it the most diverse family within superfamily Pimelodoidea, a clade endemic to the Neotropical freshwaters. Heptapterids are widely distributed from southern Mexico to the Pampas of Argentina and occupy a variety of habitats generally in small‐ to medium‐sized rivers. To evaluate the phylogenetic relationships of Heptapteridae, we used a matrix with 1,319 ultraconserved elements (UCEs) from the genome from 56 specimens spanning 42 species and 24 genera of Heptapteridae and 19 related siluriform taxa. Maximum likelihood, Bayesian and coalescent‐based analyses strongly supported the monophyly of Heptapteridae and confirmed previous hypotheses of a sister relationship between Heptapteridae and Conorhynchos conirostris. We provide the evidence to recognize two subfamilies: (1) Rhamdiinae (Goeldiella, Rhamdella, Rhamdia, Brachyrhamdia, Pimelodella) and (2) Heptapterinae; with two tribes: Brachyglaniini new tribe (Gladioglanis, Myoglanis, Brachyglanis and Leptorhamdia) and Heptapterini (Mastiglanis, Chasmocranus, Cetopsorhamdia, Pariolius, Phenacorhamdia, Nemuroglanis, Imparfinis, Taunayia, Rhamdioglanis, Acentronichthys, Rhamdiopsis and Heptapterus). Inside Heptapterini, we recognize five subclades and provide putative morphological synapomorphies. This paper represents the first molecular hypothesis of intergeneric and interspecific relationships helping to better delineate heptapterid taxa. |
doi_str_mv | 10.1111/zsc.12493 |
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C. ; Roxo, Fábio F. ; Melo, Bruno F. ; Ochoa, Luz E. ; Bockmann, Flávio A. ; Sabaj, Mark H. ; Jerep, Fernando C. ; Foresti, Fausto ; Benine, Ricardo C. ; Oliveira, Claudio</creator><creatorcontrib>Silva, Gabriel S. C. ; Roxo, Fábio F. ; Melo, Bruno F. ; Ochoa, Luz E. ; Bockmann, Flávio A. ; Sabaj, Mark H. ; Jerep, Fernando C. ; Foresti, Fausto ; Benine, Ricardo C. ; Oliveira, Claudio</creatorcontrib><description>Heptapteridae is composed of 228 valid species allocated in 24 genera, making it the most diverse family within superfamily Pimelodoidea, a clade endemic to the Neotropical freshwaters. Heptapterids are widely distributed from southern Mexico to the Pampas of Argentina and occupy a variety of habitats generally in small‐ to medium‐sized rivers. To evaluate the phylogenetic relationships of Heptapteridae, we used a matrix with 1,319 ultraconserved elements (UCEs) from the genome from 56 specimens spanning 42 species and 24 genera of Heptapteridae and 19 related siluriform taxa. Maximum likelihood, Bayesian and coalescent‐based analyses strongly supported the monophyly of Heptapteridae and confirmed previous hypotheses of a sister relationship between Heptapteridae and Conorhynchos conirostris. We provide the evidence to recognize two subfamilies: (1) Rhamdiinae (Goeldiella, Rhamdella, Rhamdia, Brachyrhamdia, Pimelodella) and (2) Heptapterinae; with two tribes: Brachyglaniini new tribe (Gladioglanis, Myoglanis, Brachyglanis and Leptorhamdia) and Heptapterini (Mastiglanis, Chasmocranus, Cetopsorhamdia, Pariolius, Phenacorhamdia, Nemuroglanis, Imparfinis, Taunayia, Rhamdioglanis, Acentronichthys, Rhamdiopsis and Heptapterus). Inside Heptapterini, we recognize five subclades and provide putative morphological synapomorphies. This paper represents the first molecular hypothesis of intergeneric and interspecific relationships helping to better delineate heptapterid taxa.</description><identifier>ISSN: 0300-3256</identifier><identifier>EISSN: 1463-6409</identifier><identifier>DOI: 10.1111/zsc.12493</identifier><language>eng</language><publisher>Oslo: Wiley Subscription Services, Inc</publisher><subject>Bayesian analysis ; catfishes ; Fresh water ; freshwater fishes ; Genomes ; Heptapteridae ; Hypotheses ; Interspecific relationships ; phylogenomics ; Phylogeny ; Pimelodoidea ; Probability theory ; Rivers ; Siluriformes ; Taxa ; ultraconserved elements</subject><ispartof>Zoologica scripta, 2021-09, Vol.50 (5), p.543-554</ispartof><rights>2021 Royal Swedish Academy of Sciences</rights><rights>Copyright © 2021 The Norwegian Academy of Science and Letters</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2973-5908790848307d310adff0a802cd1ab5eeeca109e7efa38ddfc89e59a55a58bb3</citedby><cites>FETCH-LOGICAL-c2973-5908790848307d310adff0a802cd1ab5eeeca109e7efa38ddfc89e59a55a58bb3</cites><orcidid>0000-0003-4205-8510 ; 0000-0002-9843-3175</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fzsc.12493$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fzsc.12493$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,777,781,1412,27905,27906,45555,45556</link.rule.ids></links><search><creatorcontrib>Silva, Gabriel S. C.</creatorcontrib><creatorcontrib>Roxo, Fábio F.</creatorcontrib><creatorcontrib>Melo, Bruno F.</creatorcontrib><creatorcontrib>Ochoa, Luz E.</creatorcontrib><creatorcontrib>Bockmann, Flávio A.</creatorcontrib><creatorcontrib>Sabaj, Mark H.</creatorcontrib><creatorcontrib>Jerep, Fernando C.</creatorcontrib><creatorcontrib>Foresti, Fausto</creatorcontrib><creatorcontrib>Benine, Ricardo C.</creatorcontrib><creatorcontrib>Oliveira, Claudio</creatorcontrib><title>Evolutionary history of Heptapteridae catfishes using ultraconserved elements (Teleostei, Siluriformes)</title><title>Zoologica scripta</title><description>Heptapteridae is composed of 228 valid species allocated in 24 genera, making it the most diverse family within superfamily Pimelodoidea, a clade endemic to the Neotropical freshwaters. Heptapterids are widely distributed from southern Mexico to the Pampas of Argentina and occupy a variety of habitats generally in small‐ to medium‐sized rivers. To evaluate the phylogenetic relationships of Heptapteridae, we used a matrix with 1,319 ultraconserved elements (UCEs) from the genome from 56 specimens spanning 42 species and 24 genera of Heptapteridae and 19 related siluriform taxa. Maximum likelihood, Bayesian and coalescent‐based analyses strongly supported the monophyly of Heptapteridae and confirmed previous hypotheses of a sister relationship between Heptapteridae and Conorhynchos conirostris. We provide the evidence to recognize two subfamilies: (1) Rhamdiinae (Goeldiella, Rhamdella, Rhamdia, Brachyrhamdia, Pimelodella) and (2) Heptapterinae; with two tribes: Brachyglaniini new tribe (Gladioglanis, Myoglanis, Brachyglanis and Leptorhamdia) and Heptapterini (Mastiglanis, Chasmocranus, Cetopsorhamdia, Pariolius, Phenacorhamdia, Nemuroglanis, Imparfinis, Taunayia, Rhamdioglanis, Acentronichthys, Rhamdiopsis and Heptapterus). Inside Heptapterini, we recognize five subclades and provide putative morphological synapomorphies. This paper represents the first molecular hypothesis of intergeneric and interspecific relationships helping to better delineate heptapterid taxa.</description><subject>Bayesian analysis</subject><subject>catfishes</subject><subject>Fresh water</subject><subject>freshwater fishes</subject><subject>Genomes</subject><subject>Heptapteridae</subject><subject>Hypotheses</subject><subject>Interspecific relationships</subject><subject>phylogenomics</subject><subject>Phylogeny</subject><subject>Pimelodoidea</subject><subject>Probability theory</subject><subject>Rivers</subject><subject>Siluriformes</subject><subject>Taxa</subject><subject>ultraconserved elements</subject><issn>0300-3256</issn><issn>1463-6409</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNp1kE1LAzEQQIMoWKsH_0HAiwW3TTb7kRylVCsUPLRevIR0d9KmbDdrkq3UX2-0Xh0YZg5vZpiH0C0lYxpj8uWrMU0zwc7QgGYFS4qMiHM0IIyQhKV5cYmuvN8RQnhByQBtZgfb9MHYVrkj3hofbKxW4zl0QXUBnKkV4EoFbfwWPO69aTe4b4JTlW09uAPUGBrYQxs8vl_F1voA5gEvTdM7o63bgx9dowutGg83f3WI3p5mq-k8Wbw-v0wfF0mVipIluSC8jJlxRsqaUaJqrYniJK1qqtY5AFSKEgElaMV4XeuKC8iFynOV8_WaDdHdaW_n7EcPPsid7V0bT8r4PMszUXAeqdGJqpz13oGWnTP7aEBSIn88yuhR_nqM7OTEfpoGjv-D8n05PU18Ay5Ldy0</recordid><startdate>202109</startdate><enddate>202109</enddate><creator>Silva, Gabriel S. C.</creator><creator>Roxo, Fábio F.</creator><creator>Melo, Bruno F.</creator><creator>Ochoa, Luz E.</creator><creator>Bockmann, Flávio A.</creator><creator>Sabaj, Mark H.</creator><creator>Jerep, Fernando C.</creator><creator>Foresti, Fausto</creator><creator>Benine, Ricardo C.</creator><creator>Oliveira, Claudio</creator><general>Wiley Subscription Services, Inc</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7SN</scope><scope>7SS</scope><scope>C1K</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><orcidid>https://orcid.org/0000-0003-4205-8510</orcidid><orcidid>https://orcid.org/0000-0002-9843-3175</orcidid></search><sort><creationdate>202109</creationdate><title>Evolutionary history of Heptapteridae catfishes using ultraconserved elements (Teleostei, Siluriformes)</title><author>Silva, Gabriel S. C. ; Roxo, Fábio F. ; Melo, Bruno F. ; Ochoa, Luz E. ; Bockmann, Flávio A. ; Sabaj, Mark H. ; Jerep, Fernando C. ; Foresti, Fausto ; Benine, Ricardo C. ; Oliveira, Claudio</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2973-5908790848307d310adff0a802cd1ab5eeeca109e7efa38ddfc89e59a55a58bb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Bayesian analysis</topic><topic>catfishes</topic><topic>Fresh water</topic><topic>freshwater fishes</topic><topic>Genomes</topic><topic>Heptapteridae</topic><topic>Hypotheses</topic><topic>Interspecific relationships</topic><topic>phylogenomics</topic><topic>Phylogeny</topic><topic>Pimelodoidea</topic><topic>Probability theory</topic><topic>Rivers</topic><topic>Siluriformes</topic><topic>Taxa</topic><topic>ultraconserved elements</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Silva, Gabriel S. C.</creatorcontrib><creatorcontrib>Roxo, Fábio F.</creatorcontrib><creatorcontrib>Melo, Bruno F.</creatorcontrib><creatorcontrib>Ochoa, Luz E.</creatorcontrib><creatorcontrib>Bockmann, Flávio A.</creatorcontrib><creatorcontrib>Sabaj, Mark H.</creatorcontrib><creatorcontrib>Jerep, Fernando C.</creatorcontrib><creatorcontrib>Foresti, Fausto</creatorcontrib><creatorcontrib>Benine, Ricardo C.</creatorcontrib><creatorcontrib>Oliveira, Claudio</creatorcontrib><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><jtitle>Zoologica scripta</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Silva, Gabriel S. C.</au><au>Roxo, Fábio F.</au><au>Melo, Bruno F.</au><au>Ochoa, Luz E.</au><au>Bockmann, Flávio A.</au><au>Sabaj, Mark H.</au><au>Jerep, Fernando C.</au><au>Foresti, Fausto</au><au>Benine, Ricardo C.</au><au>Oliveira, Claudio</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evolutionary history of Heptapteridae catfishes using ultraconserved elements (Teleostei, Siluriformes)</atitle><jtitle>Zoologica scripta</jtitle><date>2021-09</date><risdate>2021</risdate><volume>50</volume><issue>5</issue><spage>543</spage><epage>554</epage><pages>543-554</pages><issn>0300-3256</issn><eissn>1463-6409</eissn><abstract>Heptapteridae is composed of 228 valid species allocated in 24 genera, making it the most diverse family within superfamily Pimelodoidea, a clade endemic to the Neotropical freshwaters. Heptapterids are widely distributed from southern Mexico to the Pampas of Argentina and occupy a variety of habitats generally in small‐ to medium‐sized rivers. To evaluate the phylogenetic relationships of Heptapteridae, we used a matrix with 1,319 ultraconserved elements (UCEs) from the genome from 56 specimens spanning 42 species and 24 genera of Heptapteridae and 19 related siluriform taxa. Maximum likelihood, Bayesian and coalescent‐based analyses strongly supported the monophyly of Heptapteridae and confirmed previous hypotheses of a sister relationship between Heptapteridae and Conorhynchos conirostris. We provide the evidence to recognize two subfamilies: (1) Rhamdiinae (Goeldiella, Rhamdella, Rhamdia, Brachyrhamdia, Pimelodella) and (2) Heptapterinae; with two tribes: Brachyglaniini new tribe (Gladioglanis, Myoglanis, Brachyglanis and Leptorhamdia) and Heptapterini (Mastiglanis, Chasmocranus, Cetopsorhamdia, Pariolius, Phenacorhamdia, Nemuroglanis, Imparfinis, Taunayia, Rhamdioglanis, Acentronichthys, Rhamdiopsis and Heptapterus). Inside Heptapterini, we recognize five subclades and provide putative morphological synapomorphies. 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subjects | Bayesian analysis catfishes Fresh water freshwater fishes Genomes Heptapteridae Hypotheses Interspecific relationships phylogenomics Phylogeny Pimelodoidea Probability theory Rivers Siluriformes Taxa ultraconserved elements |
title | Evolutionary history of Heptapteridae catfishes using ultraconserved elements (Teleostei, Siluriformes) |
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