Complete chloroplast genome sequence of Adenostemma lavenia (Asteraceae) and phylogenetic analysis with related species
Adenostemma lavenia is a perennial medical herb in the family Asteraceae. Here, we sequenced and analyzed the complete chloroplast genome of A. lavenia. The complete chloroplast genome size is 150,063 bp with a GC content of 37.63%. The A. lavenia chloroplast genome is a typical quadripartite struct...
Gespeichert in:
Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2021-08, Vol.6 (8), p.2134-2136 |
---|---|
Hauptverfasser: | , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 2136 |
---|---|
container_issue | 8 |
container_start_page | 2134 |
container_title | Mitochondrial DNA. Part B. Resources |
container_volume | 6 |
creator | Xia, Mingze Li, Yan |
description | Adenostemma lavenia is a perennial medical herb in the family Asteraceae. Here, we sequenced and analyzed the complete chloroplast genome of A. lavenia. The complete chloroplast genome size is 150,063 bp with a GC content of 37.63%. The A. lavenia chloroplast genome is a typical quadripartite structure, including a large single-copy region (LSC) of 82,017 bp and a small single-copy region (SSC) of 18,142 bp separated by a pair of inverted repeats (IRs) of 24,952 bp each. A total of 114 unique genes, including 29 tRNA genes, four rRNA genes, and 81 protein-coding genes were found in the chloroplast genome. Phylogenetic analysis revealed that A. lavenia is more closely related with Chromolaena odorata. |
doi_str_mv | 10.1080/23802359.2021.1944369 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_proquest_journals_2562099256</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_1666f2621c8c4bbf8081396e5ffe763a</doaj_id><sourcerecordid>2553821501</sourcerecordid><originalsourceid>FETCH-LOGICAL-c562t-cce7d48abf70cc8f3033fb2c43782de76b9c18c3a39901ca14ea84b5dd34fb903</originalsourceid><addsrcrecordid>eNp9Uk1vEzEQXSEQrUJ_AsgSl3JI8Meu174gooiWSpW4wNma9Y6Tjbzrxd40yr_HIWnVcuA01ps3bz78iuI9owtGFf3MhaJcVHrBKWcLpstSSP2quDzi82Pi9bP3RXGV0pZSyqSoa12_LS5EyZWktb4s9qvQjx4nJHbjQwyjhzSRNQ6hR5Lw9w4HiyQ4smwzlibseyAeHnDogFwvMxDBIuAnAkNLxs3Bh1yMU2czAP6QukT23bQhET1M2JI0ou0wvSveOPAJr85xVvy6-fZz9X1-_-P2brW8n9tK8mluLdZtqaBxNbVWOUGFcA23pagVb7GWjbZMWQFCa8ossBJBlU3VtqJ0jaZiVtyddNsAWzPGrod4MAE68xcIcW0g5mk9GialdFxyZpUtm8YpqpjQEivncqPcYlZ8OWmNu6bH1uIwRfAvRF9mhm5j1uHBKC4lr8oscH0WiCFfNk2m75JF72HAsEuGV5VQnFWUZerHf6jbsIv5okeW5FTrHDKrOrFsDClFdE_DMGqOTjGPTjFHp5izU3Ldh-ebPFU9-iITvp4I3eBC7GEfom_NBPl7o4sw2C4Z8f8efwAjSs96</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2562099256</pqid></control><display><type>article</type><title>Complete chloroplast genome sequence of Adenostemma lavenia (Asteraceae) and phylogenetic analysis with related species</title><source>Taylor & Francis Open Access</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><creator>Xia, Mingze ; Li, Yan</creator><creatorcontrib>Xia, Mingze ; Li, Yan</creatorcontrib><description>Adenostemma lavenia is a perennial medical herb in the family Asteraceae. Here, we sequenced and analyzed the complete chloroplast genome of A. lavenia. The complete chloroplast genome size is 150,063 bp with a GC content of 37.63%. The A. lavenia chloroplast genome is a typical quadripartite structure, including a large single-copy region (LSC) of 82,017 bp and a small single-copy region (SSC) of 18,142 bp separated by a pair of inverted repeats (IRs) of 24,952 bp each. A total of 114 unique genes, including 29 tRNA genes, four rRNA genes, and 81 protein-coding genes were found in the chloroplast genome. Phylogenetic analysis revealed that A. lavenia is more closely related with Chromolaena odorata.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2021.1944369</identifier><identifier>PMID: 34286079</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Adenostemma lavenia ; Asteraceae ; chloroplast genome ; Chloroplasts ; Genomes ; Heredity ; Mitogenome Announcement ; Nucleotide sequence ; phylogenetic analysis ; Phylogenetics ; Phylogeny ; rRNA ; tRNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2021-08, Vol.6 (8), p.2134-2136</ispartof><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2021</rights><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2021 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c562t-cce7d48abf70cc8f3033fb2c43782de76b9c18c3a39901ca14ea84b5dd34fb903</citedby><cites>FETCH-LOGICAL-c562t-cce7d48abf70cc8f3033fb2c43782de76b9c18c3a39901ca14ea84b5dd34fb903</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8266254/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8266254/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2102,27502,27924,27925,53791,53793,59143,59144</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34286079$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Xia, Mingze</creatorcontrib><creatorcontrib>Li, Yan</creatorcontrib><title>Complete chloroplast genome sequence of Adenostemma lavenia (Asteraceae) and phylogenetic analysis with related species</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>Adenostemma lavenia is a perennial medical herb in the family Asteraceae. Here, we sequenced and analyzed the complete chloroplast genome of A. lavenia. The complete chloroplast genome size is 150,063 bp with a GC content of 37.63%. The A. lavenia chloroplast genome is a typical quadripartite structure, including a large single-copy region (LSC) of 82,017 bp and a small single-copy region (SSC) of 18,142 bp separated by a pair of inverted repeats (IRs) of 24,952 bp each. A total of 114 unique genes, including 29 tRNA genes, four rRNA genes, and 81 protein-coding genes were found in the chloroplast genome. Phylogenetic analysis revealed that A. lavenia is more closely related with Chromolaena odorata.</description><subject>Adenostemma lavenia</subject><subject>Asteraceae</subject><subject>chloroplast genome</subject><subject>Chloroplasts</subject><subject>Genomes</subject><subject>Heredity</subject><subject>Mitogenome Announcement</subject><subject>Nucleotide sequence</subject><subject>phylogenetic analysis</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>rRNA</subject><subject>tRNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9Uk1vEzEQXSEQrUJ_AsgSl3JI8Meu174gooiWSpW4wNma9Y6Tjbzrxd40yr_HIWnVcuA01ps3bz78iuI9owtGFf3MhaJcVHrBKWcLpstSSP2quDzi82Pi9bP3RXGV0pZSyqSoa12_LS5EyZWktb4s9qvQjx4nJHbjQwyjhzSRNQ6hR5Lw9w4HiyQ4smwzlibseyAeHnDogFwvMxDBIuAnAkNLxs3Bh1yMU2czAP6QukT23bQhET1M2JI0ou0wvSveOPAJr85xVvy6-fZz9X1-_-P2brW8n9tK8mluLdZtqaBxNbVWOUGFcA23pagVb7GWjbZMWQFCa8ossBJBlU3VtqJ0jaZiVtyddNsAWzPGrod4MAE68xcIcW0g5mk9GialdFxyZpUtm8YpqpjQEivncqPcYlZ8OWmNu6bH1uIwRfAvRF9mhm5j1uHBKC4lr8oscH0WiCFfNk2m75JF72HAsEuGV5VQnFWUZerHf6jbsIv5okeW5FTrHDKrOrFsDClFdE_DMGqOTjGPTjFHp5izU3Ldh-ebPFU9-iITvp4I3eBC7GEfom_NBPl7o4sw2C4Z8f8efwAjSs96</recordid><startdate>20210803</startdate><enddate>20210803</enddate><creator>Xia, Mingze</creator><creator>Li, Yan</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20210803</creationdate><title>Complete chloroplast genome sequence of Adenostemma lavenia (Asteraceae) and phylogenetic analysis with related species</title><author>Xia, Mingze ; Li, Yan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c562t-cce7d48abf70cc8f3033fb2c43782de76b9c18c3a39901ca14ea84b5dd34fb903</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Adenostemma lavenia</topic><topic>Asteraceae</topic><topic>chloroplast genome</topic><topic>Chloroplasts</topic><topic>Genomes</topic><topic>Heredity</topic><topic>Mitogenome Announcement</topic><topic>Nucleotide sequence</topic><topic>phylogenetic analysis</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>rRNA</topic><topic>tRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xia, Mingze</creatorcontrib><creatorcontrib>Li, Yan</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xia, Mingze</au><au>Li, Yan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete chloroplast genome sequence of Adenostemma lavenia (Asteraceae) and phylogenetic analysis with related species</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2021-08-03</date><risdate>2021</risdate><volume>6</volume><issue>8</issue><spage>2134</spage><epage>2136</epage><pages>2134-2136</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>Adenostemma lavenia is a perennial medical herb in the family Asteraceae. Here, we sequenced and analyzed the complete chloroplast genome of A. lavenia. The complete chloroplast genome size is 150,063 bp with a GC content of 37.63%. The A. lavenia chloroplast genome is a typical quadripartite structure, including a large single-copy region (LSC) of 82,017 bp and a small single-copy region (SSC) of 18,142 bp separated by a pair of inverted repeats (IRs) of 24,952 bp each. A total of 114 unique genes, including 29 tRNA genes, four rRNA genes, and 81 protein-coding genes were found in the chloroplast genome. Phylogenetic analysis revealed that A. lavenia is more closely related with Chromolaena odorata.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>34286079</pmid><doi>10.1080/23802359.2021.1944369</doi><tpages>3</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 2380-2359 |
ispartof | Mitochondrial DNA. Part B. Resources, 2021-08, Vol.6 (8), p.2134-2136 |
issn | 2380-2359 2380-2359 |
language | eng |
recordid | cdi_proquest_journals_2562099256 |
source | Taylor & Francis Open Access; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central |
subjects | Adenostemma lavenia Asteraceae chloroplast genome Chloroplasts Genomes Heredity Mitogenome Announcement Nucleotide sequence phylogenetic analysis Phylogenetics Phylogeny rRNA tRNA |
title | Complete chloroplast genome sequence of Adenostemma lavenia (Asteraceae) and phylogenetic analysis with related species |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-04T16%3A43%3A56IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Complete%20chloroplast%20genome%20sequence%20of%20Adenostemma%20lavenia%20(Asteraceae)%20and%20phylogenetic%20analysis%20with%20related%20species&rft.jtitle=Mitochondrial%20DNA.%20Part%20B.%20Resources&rft.au=Xia,%20Mingze&rft.date=2021-08-03&rft.volume=6&rft.issue=8&rft.spage=2134&rft.epage=2136&rft.pages=2134-2136&rft.issn=2380-2359&rft.eissn=2380-2359&rft_id=info:doi/10.1080/23802359.2021.1944369&rft_dat=%3Cproquest_pubme%3E2553821501%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2562099256&rft_id=info:pmid/34286079&rft_doaj_id=oai_doaj_org_article_1666f2621c8c4bbf8081396e5ffe763a&rfr_iscdi=true |