The complete chloroplast genome of Rhododendron datiandingense (Ericaceae)
Rhododendron datiandingense is newly reported and endemic to China. The genome of R. datiandingense is 207,311 bp in length, including a large single-copy region of 190,689 bp and a small single-copy region of 2582 bp, a pair of inverted repeat regions (IRA) of 7020 bp each. The genome encodes 110 g...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2021-06, Vol.6 (6), p.1749-1751 |
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| creator | Wang, Zheng-Feng Feng, Hui-Fang Li, You-Yu Wang, Hui-Feng Cao, Hong-Lin |
| description | Rhododendron datiandingense is newly reported and endemic to China. The genome of R. datiandingense is 207,311 bp in length, including a large single-copy region of 190,689 bp and a small single-copy region of 2582 bp, a pair of inverted repeat regions (IRA) of 7020 bp each. The genome encodes 110 genes, comprising 77 protein-coding genes, four ribosomal RNA genes, and 29 transfer RNA genes. Repeat analysis revealed 62 simple sequence repeats (SSRs) in the genome. Phylogenetic analysis revealed that R. datiandingense is clearly separated from the other Rhododendron species and shown in the basal position. |
| doi_str_mv | 10.1080/23802359.2021.1931504 |
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The genome of R. datiandingense is 207,311 bp in length, including a large single-copy region of 190,689 bp and a small single-copy region of 2582 bp, a pair of inverted repeat regions (IRA) of 7020 bp each. The genome encodes 110 genes, comprising 77 protein-coding genes, four ribosomal RNA genes, and 29 transfer RNA genes. Repeat analysis revealed 62 simple sequence repeats (SSRs) in the genome. Phylogenetic analysis revealed that R. datiandingense is clearly separated from the other Rhododendron species and shown in the basal position.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2021.1931504</identifier><identifier>PMID: 34104760</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>chloroplast ; Chloroplasts ; genome assembly ; Genomes ; Inverted repeat ; Mitogenome Announcement ; next generation sequencing ; Nucleotide sequence ; Phylogeny ; Rhododendron ; Rhododendron datiandingense ; rRNA ; Simple sequence repeats ; Transfer RNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2021-06, Vol.6 (6), p.1749-1751</ispartof><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2021</rights><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2021 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c562t-a0ceb4dc3a6ed1db60a0b1386203ad8297aca1d1aca7c25f3b8a82fd3fcbd84c3</citedby><cites>FETCH-LOGICAL-c562t-a0ceb4dc3a6ed1db60a0b1386203ad8297aca1d1aca7c25f3b8a82fd3fcbd84c3</cites><orcidid>0000-0002-7599-7891</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8158181/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8158181/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,27479,27901,27902,53766,53768,59116,59117</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34104760$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Zheng-Feng</creatorcontrib><creatorcontrib>Feng, Hui-Fang</creatorcontrib><creatorcontrib>Li, You-Yu</creatorcontrib><creatorcontrib>Wang, Hui-Feng</creatorcontrib><creatorcontrib>Cao, Hong-Lin</creatorcontrib><title>The complete chloroplast genome of Rhododendron datiandingense (Ericaceae)</title><title>Mitochondrial DNA. 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Phylogenetic analysis revealed that R. datiandingense is clearly separated from the other Rhododendron species and shown in the basal position.</description><subject>chloroplast</subject><subject>Chloroplasts</subject><subject>genome assembly</subject><subject>Genomes</subject><subject>Inverted repeat</subject><subject>Mitogenome Announcement</subject><subject>next generation sequencing</subject><subject>Nucleotide sequence</subject><subject>Phylogeny</subject><subject>Rhododendron</subject><subject>Rhododendron datiandingense</subject><subject>rRNA</subject><subject>Simple sequence repeats</subject><subject>Transfer RNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kUtv1DAUhSMEolXpTwBFYlMWM_gRx_YGUVUtFFVCQmVt3dg3Mx4l9mBnQP33OJ1p1bJgY1_dc-7x46uqt5QsKVHkI-OKMC70khFGl1RzKkjzojqe-4tZePmkPqpOc94QQmjLpdTydXXEG0oa2ZLj6tvtGmsbx-2AUynWQ0xxO0Ce6hWGOGId-_rHOrroMLgUQ-1g8hCcD0XPWJ9dJm_BIuCHN9WrHoaMp4f9pPp5dXl78XVx8_3L9cX5zcKKlk0LIBa7xlkOLTrqupYA6ShXLSMcnGJaggXqaFmlZaLnnQLFesd72znVWH5SXe9zXYSN2SY_QrozEby5b8S0MpAmbwc0riNOWw207UmDjdWd6jhKAUJyq2Vbsj7ts7a7bkRnMUwJhmehz5Xg12YVfxtFhaKKloCzQ0CKv3aYJzP6bHEYIGDcZcME12JGoYv1_T_WTdylUL6quARviNSCFJfYu2yKOSfsHy9DiZnhmwf4ZoZvDvDL3LunL3mcekBdDJ_3Bh_6mEb4E9PgzAR3BXmfIFifDf__GX8Bz-6_EQ</recordid><startdate>20210603</startdate><enddate>20210603</enddate><creator>Wang, Zheng-Feng</creator><creator>Feng, Hui-Fang</creator><creator>Li, You-Yu</creator><creator>Wang, Hui-Feng</creator><creator>Cao, Hong-Lin</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-7599-7891</orcidid></search><sort><creationdate>20210603</creationdate><title>The complete chloroplast genome of Rhododendron datiandingense (Ericaceae)</title><author>Wang, Zheng-Feng ; 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| subjects | chloroplast Chloroplasts genome assembly Genomes Inverted repeat Mitogenome Announcement next generation sequencing Nucleotide sequence Phylogeny Rhododendron Rhododendron datiandingense rRNA Simple sequence repeats Transfer RNA |
| title | The complete chloroplast genome of Rhododendron datiandingense (Ericaceae) |
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