Exploring the Boundaries of Microbial Habitability in Soil
Microbes are widely assumed to be capable of colonizing even the most challenging terrestrial surface environments on Earth given enough time. We would not expect to find surface soils uninhabited by microbes as soils typically harbor diverse microbial communities and viable microbes have been detec...
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Veröffentlicht in: | Journal of geophysical research. Biogeosciences 2021-06, Vol.126 (6), p.n/a |
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creator | Dragone, Nicholas B. Diaz, Melisa A. Hogg, Ian D. Lyons, W. Berry Jackson, W. Andrew Wall, Diana H. Adams, Byron J. Fierer, Noah |
description | Microbes are widely assumed to be capable of colonizing even the most challenging terrestrial surface environments on Earth given enough time. We would not expect to find surface soils uninhabited by microbes as soils typically harbor diverse microbial communities and viable microbes have been detected in soils exposed to even the most inhospitable conditions. However, if uninhabited soils do exist, we might expect to find them in Antarctica. We analyzed 204 ice‐free soils collected from across a remote valley in the Transantarctic Mountains (84–85°S, 174–177°W) and were able to identify a potential limit of microbial habitability. While most of the soils we tested contained diverse microbial communities, with fungi being particularly ubiquitous, microbes could not be detected in many of the driest, higher elevation soils—results that were confirmed using cultivation‐dependent, cultivation‐independent, and metabolic assays. While we cannot confirm that this subset of soils is completely sterile and devoid of microbial life, our results suggest that microbial life is severely restricted in the coldest, driest, and saltiest Antarctic soils. Constant exposure to these conditions for thousands of years has limited microbial communities so that their presence and activity is below detectable limits using a variety of standard methods. Such soils are unlikely to be unique to the studied region with this work supporting previous hypotheses that microbial habitability is constrained by near‐continuous exposure to cold, dry, and salty conditions, establishing the environmental conditions that limit microbial life in terrestrial surface soils.
Plain Language Summary
Microorganisms are the most ubiquitous forms of life on Earth and can be found in even the most challenging environments. As a result, it is often assumed that microbes have come to inhabit every terrestrial surface on Earth. Previous work has hinted that soil environments, without any detectable microorganisms or microbial activity, might exist in Antarctica. To explore this potential limit of habitability, we used a range of approaches, including culturing, DNA sequencing, and metabolic assays to explore patterns of microbial communities in Antarctic surface soils. By testing >200 soils collected across the Shackleton Glacier region, we sought to confirm whether microbial life in Antarctic surface soils is effectively undetectable under certain conditions. While we detected diverse microbial communitie |
doi_str_mv | 10.1029/2020JG006052 |
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Plain Language Summary
Microorganisms are the most ubiquitous forms of life on Earth and can be found in even the most challenging environments. As a result, it is often assumed that microbes have come to inhabit every terrestrial surface on Earth. Previous work has hinted that soil environments, without any detectable microorganisms or microbial activity, might exist in Antarctica. To explore this potential limit of habitability, we used a range of approaches, including culturing, DNA sequencing, and metabolic assays to explore patterns of microbial communities in Antarctic surface soils. By testing >200 soils collected across the Shackleton Glacier region, we sought to confirm whether microbial life in Antarctic surface soils is effectively undetectable under certain conditions. While we detected diverse microbial communities in many soils, we could not detect microbes in ∼20% of the collected samples. Our results suggest that microbial habitability is limited by the unique combination of cold, dry, salty conditions experienced at inland, higher elevation sites throughout the Transantarctic Mountain. Additionally, the prevalence of fungi at many of the most challenging sites suggests that fungi may be better adapted to some of the most challenging soil environments on Earth than bacteria and archaea.
Key Points
Microbial life in Antarctic surface soils can be severely restricted by constant exposure to cold, dry, salty conditions
Certain fungi may be better adapted than bacteria or archaea to some of the most challenging soil environments on Earth</description><identifier>ISSN: 2169-8953</identifier><identifier>EISSN: 2169-8961</identifier><identifier>DOI: 10.1029/2020JG006052</identifier><language>eng</language><publisher>Washington: Blackwell Publishing Ltd</publisher><subject>antarctica ; Archaea ; astrobiology ; bacteria ; Biological activity ; Cultivation ; DNA sequences ; DNA sequencing ; Earth ; Elevation ; Environmental conditions ; Exposure ; extremophiles ; Fungi ; Glaciers ; Habitability ; Metabolism ; Microbial activity ; Microorganisms ; Mountains ; Soil ; Soil environment ; Soil microorganisms ; Soil surfaces ; Soils</subject><ispartof>Journal of geophysical research. Biogeosciences, 2021-06, Vol.126 (6), p.n/a</ispartof><rights>2021. American Geophysical Union. All Rights Reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3459-e5a7913e3940be7bfc3f3b7f5fd70d31c0e75a55811d9f0cb7d04417da2dfb5a3</citedby><cites>FETCH-LOGICAL-c3459-e5a7913e3940be7bfc3f3b7f5fd70d31c0e75a55811d9f0cb7d04417da2dfb5a3</cites><orcidid>0000-0002-3143-7251 ; 0000-0002-8983-6482 ; 0000-0002-9466-5235</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1029%2F2020JG006052$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1029%2F2020JG006052$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,1433,27924,27925,45574,45575,46409,46833</link.rule.ids></links><search><creatorcontrib>Dragone, Nicholas B.</creatorcontrib><creatorcontrib>Diaz, Melisa A.</creatorcontrib><creatorcontrib>Hogg, Ian D.</creatorcontrib><creatorcontrib>Lyons, W. Berry</creatorcontrib><creatorcontrib>Jackson, W. Andrew</creatorcontrib><creatorcontrib>Wall, Diana H.</creatorcontrib><creatorcontrib>Adams, Byron J.</creatorcontrib><creatorcontrib>Fierer, Noah</creatorcontrib><title>Exploring the Boundaries of Microbial Habitability in Soil</title><title>Journal of geophysical research. Biogeosciences</title><description>Microbes are widely assumed to be capable of colonizing even the most challenging terrestrial surface environments on Earth given enough time. We would not expect to find surface soils uninhabited by microbes as soils typically harbor diverse microbial communities and viable microbes have been detected in soils exposed to even the most inhospitable conditions. However, if uninhabited soils do exist, we might expect to find them in Antarctica. We analyzed 204 ice‐free soils collected from across a remote valley in the Transantarctic Mountains (84–85°S, 174–177°W) and were able to identify a potential limit of microbial habitability. While most of the soils we tested contained diverse microbial communities, with fungi being particularly ubiquitous, microbes could not be detected in many of the driest, higher elevation soils—results that were confirmed using cultivation‐dependent, cultivation‐independent, and metabolic assays. While we cannot confirm that this subset of soils is completely sterile and devoid of microbial life, our results suggest that microbial life is severely restricted in the coldest, driest, and saltiest Antarctic soils. Constant exposure to these conditions for thousands of years has limited microbial communities so that their presence and activity is below detectable limits using a variety of standard methods. Such soils are unlikely to be unique to the studied region with this work supporting previous hypotheses that microbial habitability is constrained by near‐continuous exposure to cold, dry, and salty conditions, establishing the environmental conditions that limit microbial life in terrestrial surface soils.
Plain Language Summary
Microorganisms are the most ubiquitous forms of life on Earth and can be found in even the most challenging environments. As a result, it is often assumed that microbes have come to inhabit every terrestrial surface on Earth. Previous work has hinted that soil environments, without any detectable microorganisms or microbial activity, might exist in Antarctica. To explore this potential limit of habitability, we used a range of approaches, including culturing, DNA sequencing, and metabolic assays to explore patterns of microbial communities in Antarctic surface soils. By testing >200 soils collected across the Shackleton Glacier region, we sought to confirm whether microbial life in Antarctic surface soils is effectively undetectable under certain conditions. While we detected diverse microbial communities in many soils, we could not detect microbes in ∼20% of the collected samples. Our results suggest that microbial habitability is limited by the unique combination of cold, dry, salty conditions experienced at inland, higher elevation sites throughout the Transantarctic Mountain. Additionally, the prevalence of fungi at many of the most challenging sites suggests that fungi may be better adapted to some of the most challenging soil environments on Earth than bacteria and archaea.
Key Points
Microbial life in Antarctic surface soils can be severely restricted by constant exposure to cold, dry, salty conditions
Certain fungi may be better adapted than bacteria or archaea to some of the most challenging soil environments on Earth</description><subject>antarctica</subject><subject>Archaea</subject><subject>astrobiology</subject><subject>bacteria</subject><subject>Biological activity</subject><subject>Cultivation</subject><subject>DNA sequences</subject><subject>DNA sequencing</subject><subject>Earth</subject><subject>Elevation</subject><subject>Environmental conditions</subject><subject>Exposure</subject><subject>extremophiles</subject><subject>Fungi</subject><subject>Glaciers</subject><subject>Habitability</subject><subject>Metabolism</subject><subject>Microbial activity</subject><subject>Microorganisms</subject><subject>Mountains</subject><subject>Soil</subject><subject>Soil environment</subject><subject>Soil microorganisms</subject><subject>Soil surfaces</subject><subject>Soils</subject><issn>2169-8953</issn><issn>2169-8961</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNp9kFtLAzEQhYMoWGrf_AELvro6ue02vmnRraUieHkOySbRlHVTky3af2-kIj45cJhh-JgzHISOMZxhIOKcAIFFA1ABJ3toRHAlyqmo8P7vzOkhmqS0glzTvMJ4hC6uP9ddiL5_KYZXW1yFTW9U9DYVwRV3vo1Be9UVc6X9kNX5YVv4vngMvjtCB051yU5--hg931w_zebl8r65nV0uy5YyLkrLVS0wtVQw0LbWrqWO6tpxZ2owFLdga644n2JshINW1wYYw7VRxDjNFR2jk93ddQzvG5sGuQqb2GdLSThjAljFeaZOd1R-OaVonVxH_6biVmKQ3wHJvwFlnO7wD9_Z7b-sXDQPDcGCCPoFTgBlgA</recordid><startdate>202106</startdate><enddate>202106</enddate><creator>Dragone, Nicholas B.</creator><creator>Diaz, Melisa A.</creator><creator>Hogg, Ian D.</creator><creator>Lyons, W. Berry</creator><creator>Jackson, W. Andrew</creator><creator>Wall, Diana H.</creator><creator>Adams, Byron J.</creator><creator>Fierer, Noah</creator><general>Blackwell Publishing Ltd</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7UA</scope><scope>C1K</scope><scope>F1W</scope><scope>H96</scope><scope>L.G</scope><orcidid>https://orcid.org/0000-0002-3143-7251</orcidid><orcidid>https://orcid.org/0000-0002-8983-6482</orcidid><orcidid>https://orcid.org/0000-0002-9466-5235</orcidid></search><sort><creationdate>202106</creationdate><title>Exploring the Boundaries of Microbial Habitability in Soil</title><author>Dragone, Nicholas B. ; Diaz, Melisa A. ; Hogg, Ian D. ; Lyons, W. Berry ; Jackson, W. Andrew ; Wall, Diana H. ; Adams, Byron J. ; Fierer, Noah</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3459-e5a7913e3940be7bfc3f3b7f5fd70d31c0e75a55811d9f0cb7d04417da2dfb5a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>antarctica</topic><topic>Archaea</topic><topic>astrobiology</topic><topic>bacteria</topic><topic>Biological activity</topic><topic>Cultivation</topic><topic>DNA sequences</topic><topic>DNA sequencing</topic><topic>Earth</topic><topic>Elevation</topic><topic>Environmental conditions</topic><topic>Exposure</topic><topic>extremophiles</topic><topic>Fungi</topic><topic>Glaciers</topic><topic>Habitability</topic><topic>Metabolism</topic><topic>Microbial activity</topic><topic>Microorganisms</topic><topic>Mountains</topic><topic>Soil</topic><topic>Soil environment</topic><topic>Soil microorganisms</topic><topic>Soil surfaces</topic><topic>Soils</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Dragone, Nicholas B.</creatorcontrib><creatorcontrib>Diaz, Melisa A.</creatorcontrib><creatorcontrib>Hogg, Ian D.</creatorcontrib><creatorcontrib>Lyons, W. Berry</creatorcontrib><creatorcontrib>Jackson, W. Andrew</creatorcontrib><creatorcontrib>Wall, Diana H.</creatorcontrib><creatorcontrib>Adams, Byron J.</creatorcontrib><creatorcontrib>Fierer, Noah</creatorcontrib><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Water Resources Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 2: Ocean Technology, Policy & Non-Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><jtitle>Journal of geophysical research. Biogeosciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Dragone, Nicholas B.</au><au>Diaz, Melisa A.</au><au>Hogg, Ian D.</au><au>Lyons, W. Berry</au><au>Jackson, W. Andrew</au><au>Wall, Diana H.</au><au>Adams, Byron J.</au><au>Fierer, Noah</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Exploring the Boundaries of Microbial Habitability in Soil</atitle><jtitle>Journal of geophysical research. Biogeosciences</jtitle><date>2021-06</date><risdate>2021</risdate><volume>126</volume><issue>6</issue><epage>n/a</epage><issn>2169-8953</issn><eissn>2169-8961</eissn><abstract>Microbes are widely assumed to be capable of colonizing even the most challenging terrestrial surface environments on Earth given enough time. We would not expect to find surface soils uninhabited by microbes as soils typically harbor diverse microbial communities and viable microbes have been detected in soils exposed to even the most inhospitable conditions. However, if uninhabited soils do exist, we might expect to find them in Antarctica. We analyzed 204 ice‐free soils collected from across a remote valley in the Transantarctic Mountains (84–85°S, 174–177°W) and were able to identify a potential limit of microbial habitability. While most of the soils we tested contained diverse microbial communities, with fungi being particularly ubiquitous, microbes could not be detected in many of the driest, higher elevation soils—results that were confirmed using cultivation‐dependent, cultivation‐independent, and metabolic assays. While we cannot confirm that this subset of soils is completely sterile and devoid of microbial life, our results suggest that microbial life is severely restricted in the coldest, driest, and saltiest Antarctic soils. Constant exposure to these conditions for thousands of years has limited microbial communities so that their presence and activity is below detectable limits using a variety of standard methods. Such soils are unlikely to be unique to the studied region with this work supporting previous hypotheses that microbial habitability is constrained by near‐continuous exposure to cold, dry, and salty conditions, establishing the environmental conditions that limit microbial life in terrestrial surface soils.
Plain Language Summary
Microorganisms are the most ubiquitous forms of life on Earth and can be found in even the most challenging environments. As a result, it is often assumed that microbes have come to inhabit every terrestrial surface on Earth. Previous work has hinted that soil environments, without any detectable microorganisms or microbial activity, might exist in Antarctica. To explore this potential limit of habitability, we used a range of approaches, including culturing, DNA sequencing, and metabolic assays to explore patterns of microbial communities in Antarctic surface soils. By testing >200 soils collected across the Shackleton Glacier region, we sought to confirm whether microbial life in Antarctic surface soils is effectively undetectable under certain conditions. While we detected diverse microbial communities in many soils, we could not detect microbes in ∼20% of the collected samples. Our results suggest that microbial habitability is limited by the unique combination of cold, dry, salty conditions experienced at inland, higher elevation sites throughout the Transantarctic Mountain. Additionally, the prevalence of fungi at many of the most challenging sites suggests that fungi may be better adapted to some of the most challenging soil environments on Earth than bacteria and archaea.
Key Points
Microbial life in Antarctic surface soils can be severely restricted by constant exposure to cold, dry, salty conditions
Certain fungi may be better adapted than bacteria or archaea to some of the most challenging soil environments on Earth</abstract><cop>Washington</cop><pub>Blackwell Publishing Ltd</pub><doi>10.1029/2020JG006052</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0002-3143-7251</orcidid><orcidid>https://orcid.org/0000-0002-8983-6482</orcidid><orcidid>https://orcid.org/0000-0002-9466-5235</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | antarctica Archaea astrobiology bacteria Biological activity Cultivation DNA sequences DNA sequencing Earth Elevation Environmental conditions Exposure extremophiles Fungi Glaciers Habitability Metabolism Microbial activity Microorganisms Mountains Soil Soil environment Soil microorganisms Soil surfaces Soils |
title | Exploring the Boundaries of Microbial Habitability in Soil |
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