Development of Motion Artifact Generator for Deep Learning in Brain MRI
Purpose: We focused on deep learning for a reduction of motion artifacts in MRI. It is difficult to collect a large number of images with and without motion artifacts from clinical images. The purpose of this study was to create motion artifact images in MRI by simulation. Methods: We created motion...
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Veröffentlicht in: | Japanese Journal of Radiological Technology 2021, Vol.77(5), pp.463-470 |
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description | Purpose: We focused on deep learning for a reduction of motion artifacts in MRI. It is difficult to collect a large number of images with and without motion artifacts from clinical images. The purpose of this study was to create motion artifact images in MRI by simulation. Methods: We created motion artifact images by computer simulation. First, 20 different types of vertical pixel-shifted images were created with different shifts, and the amount of pixel shift was set from –10 to 10 pixels. The same method was used to create pixel-shifted images for horizontal shift, diagonal shift, and rotational shift, and a total of 80 types of pixel-shifted images were prepared. These images were Fourier transformed to create 80 types of k-space data. Then, phase encodings in these k-space data were randomly sampled and Fourier transformed to create artifact images. The reproducibility of the simulation images was verified using the deep learning network model of U-net. In this study, the evaluation indices used were the structural similarity index measure (SSIM) and peak signal-to-noise ratio (PSNR). Results: The average SSIM and PSNR for the simulation images were 0.95 and 31.5, respectively; those for the clinical images were 0.96 and 31.1, respectively. Conclusion: Our simulation method enables us to create a large number of artifact images in a short time, equivalent to clinical artifact images. |
doi_str_mv | 10.6009/jjrt.2021_JSRT_77.5.463 |
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It is difficult to collect a large number of images with and without motion artifacts from clinical images. The purpose of this study was to create motion artifact images in MRI by simulation. Methods: We created motion artifact images by computer simulation. First, 20 different types of vertical pixel-shifted images were created with different shifts, and the amount of pixel shift was set from –10 to 10 pixels. The same method was used to create pixel-shifted images for horizontal shift, diagonal shift, and rotational shift, and a total of 80 types of pixel-shifted images were prepared. These images were Fourier transformed to create 80 types of k-space data. Then, phase encodings in these k-space data were randomly sampled and Fourier transformed to create artifact images. The reproducibility of the simulation images was verified using the deep learning network model of U-net. In this study, the evaluation indices used were the structural similarity index measure (SSIM) and peak signal-to-noise ratio (PSNR). Results: The average SSIM and PSNR for the simulation images were 0.95 and 31.5, respectively; those for the clinical images were 0.96 and 31.1, respectively. Conclusion: Our simulation method enables us to create a large number of artifact images in a short time, equivalent to clinical artifact images.</description><identifier>ISSN: 0369-4305</identifier><identifier>EISSN: 1881-4883</identifier><identifier>DOI: 10.6009/jjrt.2021_JSRT_77.5.463</identifier><identifier>PMID: 34011789</identifier><language>eng ; jpn</language><publisher>Japan: Japanese Society of Radiological Technology</publisher><subject>brain ; Computer simulation ; Deep learning ; Fourier transforms ; Magnetic resonance imaging ; magnetic resonance imaging (MRI) ; Medical imaging ; motion artifact ; Pixels ; Signal to noise ratio ; Simulation</subject><ispartof>Japanese Journal of Radiological Technology, 2021, Vol.77(5), pp.463-470</ispartof><rights>2021 Japanese Society of Radiological Technology</rights><rights>Copyright Japan Science and Technology Agency 2021</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3053-e253ae49f96654e85f04b6f9304e8cdaf9c7e2d4a120462b59a48cb1af4966533</citedby><cites>FETCH-LOGICAL-c3053-e253ae49f96654e85f04b6f9304e8cdaf9c7e2d4a120462b59a48cb1af4966533</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,4010,27900,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34011789$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tsukamoto, Hikari</creatorcontrib><creatorcontrib>Muro, Isao</creatorcontrib><title>Development of Motion Artifact Generator for Deep Learning in Brain MRI</title><title>Japanese Journal of Radiological Technology</title><addtitle>Jpn. J. Radiol. Technol.</addtitle><description>Purpose: We focused on deep learning for a reduction of motion artifacts in MRI. It is difficult to collect a large number of images with and without motion artifacts from clinical images. The purpose of this study was to create motion artifact images in MRI by simulation. Methods: We created motion artifact images by computer simulation. First, 20 different types of vertical pixel-shifted images were created with different shifts, and the amount of pixel shift was set from –10 to 10 pixels. The same method was used to create pixel-shifted images for horizontal shift, diagonal shift, and rotational shift, and a total of 80 types of pixel-shifted images were prepared. These images were Fourier transformed to create 80 types of k-space data. Then, phase encodings in these k-space data were randomly sampled and Fourier transformed to create artifact images. The reproducibility of the simulation images was verified using the deep learning network model of U-net. In this study, the evaluation indices used were the structural similarity index measure (SSIM) and peak signal-to-noise ratio (PSNR). Results: The average SSIM and PSNR for the simulation images were 0.95 and 31.5, respectively; those for the clinical images were 0.96 and 31.1, respectively. Conclusion: Our simulation method enables us to create a large number of artifact images in a short time, equivalent to clinical artifact images.</description><subject>brain</subject><subject>Computer simulation</subject><subject>Deep learning</subject><subject>Fourier transforms</subject><subject>Magnetic resonance imaging</subject><subject>magnetic resonance imaging (MRI)</subject><subject>Medical imaging</subject><subject>motion artifact</subject><subject>Pixels</subject><subject>Signal to noise ratio</subject><subject>Simulation</subject><issn>0369-4305</issn><issn>1881-4883</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNplkFFPwjAYRRujEYL8BV3i82a7dt36iKCIgZggPjdd-YpbYJtdMfHfWxwSEx_aps2592sOQjcERxxjcVeW1kUxjol8fl2uZJpGScQ4PUN9kmUkZFlGz1EfUy5CRnHSQ8O2LXLso_4Js0vUowwTkmaij6YT-IRt3eygckFtgkXtiroKRtYVRmkXTKECq1xtA-PXBKAJ5qBsVVSboKiCe6v8vljOrtCFUdsWhsdzgN4eH1bjp3D-Mp2NR_NQ-5_QEOKEKmDCCM4TBlliMMu5ERT7i14rI3QK8ZopEmPG4zwRimU6J8qwQ4LSAbrtehtbf-yhdbKs97byI6WvTgTLSMo9lXaUtnXbWjCyscVO2S9JsDw4lAeH8q9DmUjv0Cevj_37fAfrU-7XmAcWHVC2Tm3gBChvTG-hK_6p89v_ASdOvysroaLfhDWIxA</recordid><startdate>2021</startdate><enddate>2021</enddate><creator>Tsukamoto, Hikari</creator><creator>Muro, Isao</creator><general>Japanese Society of Radiological Technology</general><general>Japan Science and Technology Agency</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7SC</scope><scope>7U5</scope><scope>8FD</scope><scope>FR3</scope><scope>JQ2</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>P64</scope></search><sort><creationdate>2021</creationdate><title>Development of Motion Artifact Generator for Deep Learning in Brain MRI</title><author>Tsukamoto, Hikari ; Muro, Isao</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3053-e253ae49f96654e85f04b6f9304e8cdaf9c7e2d4a120462b59a48cb1af4966533</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng ; jpn</language><creationdate>2021</creationdate><topic>brain</topic><topic>Computer simulation</topic><topic>Deep learning</topic><topic>Fourier transforms</topic><topic>Magnetic resonance imaging</topic><topic>magnetic resonance imaging (MRI)</topic><topic>Medical imaging</topic><topic>motion artifact</topic><topic>Pixels</topic><topic>Signal to noise ratio</topic><topic>Simulation</topic><toplevel>online_resources</toplevel><creatorcontrib>Tsukamoto, Hikari</creatorcontrib><creatorcontrib>Muro, Isao</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Japanese Journal of Radiological Technology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tsukamoto, Hikari</au><au>Muro, Isao</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Development of Motion Artifact Generator for Deep Learning in Brain MRI</atitle><jtitle>Japanese Journal of Radiological Technology</jtitle><addtitle>Jpn. J. Radiol. Technol.</addtitle><date>2021</date><risdate>2021</risdate><volume>77</volume><issue>5</issue><spage>463</spage><epage>470</epage><pages>463-470</pages><issn>0369-4305</issn><eissn>1881-4883</eissn><abstract>Purpose: We focused on deep learning for a reduction of motion artifacts in MRI. It is difficult to collect a large number of images with and without motion artifacts from clinical images. The purpose of this study was to create motion artifact images in MRI by simulation. Methods: We created motion artifact images by computer simulation. First, 20 different types of vertical pixel-shifted images were created with different shifts, and the amount of pixel shift was set from –10 to 10 pixels. The same method was used to create pixel-shifted images for horizontal shift, diagonal shift, and rotational shift, and a total of 80 types of pixel-shifted images were prepared. These images were Fourier transformed to create 80 types of k-space data. Then, phase encodings in these k-space data were randomly sampled and Fourier transformed to create artifact images. The reproducibility of the simulation images was verified using the deep learning network model of U-net. In this study, the evaluation indices used were the structural similarity index measure (SSIM) and peak signal-to-noise ratio (PSNR). Results: The average SSIM and PSNR for the simulation images were 0.95 and 31.5, respectively; those for the clinical images were 0.96 and 31.1, respectively. Conclusion: Our simulation method enables us to create a large number of artifact images in a short time, equivalent to clinical artifact images.</abstract><cop>Japan</cop><pub>Japanese Society of Radiological Technology</pub><pmid>34011789</pmid><doi>10.6009/jjrt.2021_JSRT_77.5.463</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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subjects | brain Computer simulation Deep learning Fourier transforms Magnetic resonance imaging magnetic resonance imaging (MRI) Medical imaging motion artifact Pixels Signal to noise ratio Simulation |
title | Development of Motion Artifact Generator for Deep Learning in Brain MRI |
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