High congruence of karyotypic and molecular data on Hypostomus species from Brazilian southeast
The Hypostomini tribe comprises a single genus, Hypostomus , which possibly contains several monophyletic groups because of significant morphological variation and a variety of diploid numbers and karyotype formulas. The objective of this study was to infer evolutionary relationships among 21 specie...
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description | The Hypostomini tribe comprises a single genus,
Hypostomus
, which possibly contains several monophyletic groups because of significant morphological variation and a variety of diploid numbers and karyotype formulas. The objective of this study was to infer evolutionary relationships among 21 species of
Hypostomus
found in Brazilian southeast and subsequently to identify chromosomal synapomorphies in the groupings formed. Two nuclear genes,
rag1
and
rag2
, and two mitochondrial genes,
mt-co1
and
mt-cyb
, were used to establish evolutionary relationships. Phylogenetic trees were inferred using the maximum likelihood (ML) method for
mt-co1
and Bayesian analysis (BA) for all genes concatenated. Both phylogenetic trees showed two large monophyletic clades within
Hypostomus
. These clades are based on chromosome number, where haplogroup I contains individuals with 66–68 chromosomes and haplogroup II contains species with 72–80 chromosomes. A third monophyletic haplogroup was also observed using ML, formed by
H. faveolus
and
H. cochliodon
, which present 2
n
= 64, reinforcing the separation of groups in
Hypostomus
by diploid number. Robertsonian rearrangements were responsible for forming the different diploid numbers and for the diversity of karyotype formulas. Ag-NORs are predominantly multiple and located on st/a chromosomes, along with 18S rDNA sites; 5S rDNA sites are often seen in an interstitial position, following the trend already described for vertebrates. The groups based on traditional morphological taxonomy are considered artificial in this study; proposed colored patterns recognizing two large groups are supported by little chromosomal evidence, and it was considered based on homoplastic characters. |
doi_str_mv | 10.1007/s13127-021-00478-z |
format | Article |
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Hypostomus
, which possibly contains several monophyletic groups because of significant morphological variation and a variety of diploid numbers and karyotype formulas. The objective of this study was to infer evolutionary relationships among 21 species of
Hypostomus
found in Brazilian southeast and subsequently to identify chromosomal synapomorphies in the groupings formed. Two nuclear genes,
rag1
and
rag2
, and two mitochondrial genes,
mt-co1
and
mt-cyb
, were used to establish evolutionary relationships. Phylogenetic trees were inferred using the maximum likelihood (ML) method for
mt-co1
and Bayesian analysis (BA) for all genes concatenated. Both phylogenetic trees showed two large monophyletic clades within
Hypostomus
. These clades are based on chromosome number, where haplogroup I contains individuals with 66–68 chromosomes and haplogroup II contains species with 72–80 chromosomes. A third monophyletic haplogroup was also observed using ML, formed by
H. faveolus
and
H. cochliodon
, which present 2
n
= 64, reinforcing the separation of groups in
Hypostomus
by diploid number. Robertsonian rearrangements were responsible for forming the different diploid numbers and for the diversity of karyotype formulas. Ag-NORs are predominantly multiple and located on st/a chromosomes, along with 18S rDNA sites; 5S rDNA sites are often seen in an interstitial position, following the trend already described for vertebrates. The groups based on traditional morphological taxonomy are considered artificial in this study; proposed colored patterns recognizing two large groups are supported by little chromosomal evidence, and it was considered based on homoplastic characters.</description><identifier>ISSN: 1439-6092</identifier><identifier>EISSN: 1618-1077</identifier><identifier>DOI: 10.1007/s13127-021-00478-z</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Animal Systematics/Taxonomy/Biogeography ; Bayesian analysis ; Bayesian theory ; Biodiversity ; Biomedical and Life Sciences ; Chromosome number ; Chromosomes ; Colour ; Developmental Biology ; Diploids ; DNA ; Evolutionary Biology ; Genes ; Hypostomus ; Karyotypes ; Life Sciences ; Mitochondria ; Morphology ; Original Article ; Pattern recognition ; Phylogenetics ; Phylogeny ; Plant Systematics/Taxonomy/Biogeography ; Probability theory ; RAG1 protein ; RAG2 protein ; Species ; Taxonomy ; Vertebrates</subject><ispartof>Organisms diversity & evolution, 2021-03, Vol.21 (1), p.135-143</ispartof><rights>Gesellschaft für Biologische Systematik 2021</rights><rights>Gesellschaft für Biologische Systematik 2021.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c363t-96045792f13a77aa2a9948718315d9a29f554b7259a8ec459a432e9da980e7f43</citedby><cites>FETCH-LOGICAL-c363t-96045792f13a77aa2a9948718315d9a29f554b7259a8ec459a432e9da980e7f43</cites><orcidid>0000-0003-1762-8745 ; 0000-0002-3513-4071 ; 0000-0002-4955-2792</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s13127-021-00478-z$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s13127-021-00478-z$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27923,27924,41487,42556,51318</link.rule.ids></links><search><creatorcontrib>Rocha-Reis, Dinaíza Abadia</creatorcontrib><creatorcontrib>Pasa, Rubens</creatorcontrib><creatorcontrib>Kavalco, Karine Frehner</creatorcontrib><title>High congruence of karyotypic and molecular data on Hypostomus species from Brazilian southeast</title><title>Organisms diversity & evolution</title><addtitle>Org Divers Evol</addtitle><description>The Hypostomini tribe comprises a single genus,
Hypostomus
, which possibly contains several monophyletic groups because of significant morphological variation and a variety of diploid numbers and karyotype formulas. The objective of this study was to infer evolutionary relationships among 21 species of
Hypostomus
found in Brazilian southeast and subsequently to identify chromosomal synapomorphies in the groupings formed. Two nuclear genes,
rag1
and
rag2
, and two mitochondrial genes,
mt-co1
and
mt-cyb
, were used to establish evolutionary relationships. Phylogenetic trees were inferred using the maximum likelihood (ML) method for
mt-co1
and Bayesian analysis (BA) for all genes concatenated. Both phylogenetic trees showed two large monophyletic clades within
Hypostomus
. These clades are based on chromosome number, where haplogroup I contains individuals with 66–68 chromosomes and haplogroup II contains species with 72–80 chromosomes. A third monophyletic haplogroup was also observed using ML, formed by
H. faveolus
and
H. cochliodon
, which present 2
n
= 64, reinforcing the separation of groups in
Hypostomus
by diploid number. Robertsonian rearrangements were responsible for forming the different diploid numbers and for the diversity of karyotype formulas. Ag-NORs are predominantly multiple and located on st/a chromosomes, along with 18S rDNA sites; 5S rDNA sites are often seen in an interstitial position, following the trend already described for vertebrates. The groups based on traditional morphological taxonomy are considered artificial in this study; proposed colored patterns recognizing two large groups are supported by little chromosomal evidence, and it was considered based on homoplastic characters.</description><subject>Animal Systematics/Taxonomy/Biogeography</subject><subject>Bayesian analysis</subject><subject>Bayesian theory</subject><subject>Biodiversity</subject><subject>Biomedical and Life Sciences</subject><subject>Chromosome number</subject><subject>Chromosomes</subject><subject>Colour</subject><subject>Developmental Biology</subject><subject>Diploids</subject><subject>DNA</subject><subject>Evolutionary Biology</subject><subject>Genes</subject><subject>Hypostomus</subject><subject>Karyotypes</subject><subject>Life Sciences</subject><subject>Mitochondria</subject><subject>Morphology</subject><subject>Original Article</subject><subject>Pattern recognition</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant Systematics/Taxonomy/Biogeography</subject><subject>Probability theory</subject><subject>RAG1 protein</subject><subject>RAG2 protein</subject><subject>Species</subject><subject>Taxonomy</subject><subject>Vertebrates</subject><issn>1439-6092</issn><issn>1618-1077</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNp9kDtPwzAUhS0EEuXxB5gsMRv8ShyPUAFFqsQCs3VxnDYliYPtDO2vxxAkNqZzhnPO1f0QumL0hlGqbiMTjCtCOSOUSlWRwxFasJJVhFGljrOXQpOSan6KzmLcUco5Y2qBzKrdbLH1wyZMbrAO-wZ_QNj7tB9bi2Goce87Z6cOAq4hAfYDXu1HH5Pvp4jj6GzrIm6C7_F9gEPbtTDg6Ke0dRDTBTppoIvu8lfP0dvjw-tyRdYvT8_LuzWxohSJ6JLKQmneMAFKAXDQWlaKVYIVtQaum6KQ74oXGipnZRYpuNM16Io61Uhxjq7n3TH4z8nFZHZ-CkM-aXhBhcwoJM8pPqds8DEG15gxtH1-1zBqvkGaGaTJIM0PSHPIJTGXYg4PGxf-pv9pfQF0RXbe</recordid><startdate>20210301</startdate><enddate>20210301</enddate><creator>Rocha-Reis, Dinaíza Abadia</creator><creator>Pasa, Rubens</creator><creator>Kavalco, Karine Frehner</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7SS</scope><scope>7TN</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0003-1762-8745</orcidid><orcidid>https://orcid.org/0000-0002-3513-4071</orcidid><orcidid>https://orcid.org/0000-0002-4955-2792</orcidid></search><sort><creationdate>20210301</creationdate><title>High congruence of karyotypic and molecular data on Hypostomus species from Brazilian southeast</title><author>Rocha-Reis, Dinaíza Abadia ; Pasa, Rubens ; Kavalco, Karine Frehner</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c363t-96045792f13a77aa2a9948718315d9a29f554b7259a8ec459a432e9da980e7f43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Animal Systematics/Taxonomy/Biogeography</topic><topic>Bayesian analysis</topic><topic>Bayesian theory</topic><topic>Biodiversity</topic><topic>Biomedical and Life Sciences</topic><topic>Chromosome number</topic><topic>Chromosomes</topic><topic>Colour</topic><topic>Developmental Biology</topic><topic>Diploids</topic><topic>DNA</topic><topic>Evolutionary Biology</topic><topic>Genes</topic><topic>Hypostomus</topic><topic>Karyotypes</topic><topic>Life Sciences</topic><topic>Mitochondria</topic><topic>Morphology</topic><topic>Original Article</topic><topic>Pattern recognition</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant Systematics/Taxonomy/Biogeography</topic><topic>Probability theory</topic><topic>RAG1 protein</topic><topic>RAG2 protein</topic><topic>Species</topic><topic>Taxonomy</topic><topic>Vertebrates</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Rocha-Reis, Dinaíza Abadia</creatorcontrib><creatorcontrib>Pasa, Rubens</creatorcontrib><creatorcontrib>Kavalco, Karine Frehner</creatorcontrib><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Oceanic Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Organisms diversity & evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Rocha-Reis, Dinaíza Abadia</au><au>Pasa, Rubens</au><au>Kavalco, Karine Frehner</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>High congruence of karyotypic and molecular data on Hypostomus species from Brazilian southeast</atitle><jtitle>Organisms diversity & evolution</jtitle><stitle>Org Divers Evol</stitle><date>2021-03-01</date><risdate>2021</risdate><volume>21</volume><issue>1</issue><spage>135</spage><epage>143</epage><pages>135-143</pages><issn>1439-6092</issn><eissn>1618-1077</eissn><abstract>The Hypostomini tribe comprises a single genus,
Hypostomus
, which possibly contains several monophyletic groups because of significant morphological variation and a variety of diploid numbers and karyotype formulas. The objective of this study was to infer evolutionary relationships among 21 species of
Hypostomus
found in Brazilian southeast and subsequently to identify chromosomal synapomorphies in the groupings formed. Two nuclear genes,
rag1
and
rag2
, and two mitochondrial genes,
mt-co1
and
mt-cyb
, were used to establish evolutionary relationships. Phylogenetic trees were inferred using the maximum likelihood (ML) method for
mt-co1
and Bayesian analysis (BA) for all genes concatenated. Both phylogenetic trees showed two large monophyletic clades within
Hypostomus
. These clades are based on chromosome number, where haplogroup I contains individuals with 66–68 chromosomes and haplogroup II contains species with 72–80 chromosomes. A third monophyletic haplogroup was also observed using ML, formed by
H. faveolus
and
H. cochliodon
, which present 2
n
= 64, reinforcing the separation of groups in
Hypostomus
by diploid number. Robertsonian rearrangements were responsible for forming the different diploid numbers and for the diversity of karyotype formulas. Ag-NORs are predominantly multiple and located on st/a chromosomes, along with 18S rDNA sites; 5S rDNA sites are often seen in an interstitial position, following the trend already described for vertebrates. The groups based on traditional morphological taxonomy are considered artificial in this study; proposed colored patterns recognizing two large groups are supported by little chromosomal evidence, and it was considered based on homoplastic characters.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><doi>10.1007/s13127-021-00478-z</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0003-1762-8745</orcidid><orcidid>https://orcid.org/0000-0002-3513-4071</orcidid><orcidid>https://orcid.org/0000-0002-4955-2792</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Animal Systematics/Taxonomy/Biogeography Bayesian analysis Bayesian theory Biodiversity Biomedical and Life Sciences Chromosome number Chromosomes Colour Developmental Biology Diploids DNA Evolutionary Biology Genes Hypostomus Karyotypes Life Sciences Mitochondria Morphology Original Article Pattern recognition Phylogenetics Phylogeny Plant Systematics/Taxonomy/Biogeography Probability theory RAG1 protein RAG2 protein Species Taxonomy Vertebrates |
title | High congruence of karyotypic and molecular data on Hypostomus species from Brazilian southeast |
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