Identification of peat type and humification by laboratory VNIR/SWIR hyperspectral imaging of peat profiles with focus on fen-bog transition in aapa mires
Aims Hyperspectral imaging (HSI) has high potential for analysing peat cores, but methodologies are deficient. We aimed for robust peat type classification and humification estimation. We also explored other factors affecting peat spectral properties. Methods We used two laboratory setups: VNIR (vis...
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description | Aims
Hyperspectral imaging (HSI) has high potential for analysing peat cores, but methodologies are deficient. We aimed for robust peat type classification and humification estimation. We also explored other factors affecting peat spectral properties.
Methods
We used two laboratory setups: VNIR (visible to near-infrared) and SWIR (shortwave infrared) for high resolution imaging of intact peat profiles with fen-bog transitions. Peat types were classified with support vector machines, indices were developed for von Post estimation, and K-means clustering was used to analyse stratigraphic patterns in peat quality. With separate experiments, we studied spectral effects of drying and oxidation.
Results
Despite major effects, oxidation and water content did not impede robust HSI classification. The accuracy between
Carex
peat and
Sphagnum
peat in validation was 80% with VNIR and 81% with SWIR data. The spectral humification indices had accuracies of 82% with VNIR and 56%. Stratigraphic HSI patterns revealed that 36% of peat layer shifts were inclined by over 20 degrees. Spectral indices were used to extrapolate visualisations of element concentrations.
Conclusions
HSI provided reliable information of basic peat quality and was useful in visual mapping, that can guide sampling for other analyses. HSI can manage large amounts of samples to widen the scope of detailed analysis beyond single profiles and it has wide potential in peat research beyond the exploratory scope of this paper. We were able to confirm the capacity of HSI to reveal shifts of peat quality, connected to ecosystem-scale change. |
doi_str_mv | 10.1007/s11104-020-04775-y |
format | Article |
fullrecord | <record><control><sourceid>gale_proqu</sourceid><recordid>TN_cdi_proquest_journals_2503197872</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A656117076</galeid><sourcerecordid>A656117076</sourcerecordid><originalsourceid>FETCH-LOGICAL-c402t-9656a5bd1d9d8c36e273d5cd5782cdade109f608c0e602b420352ff721a0e9353</originalsourceid><addsrcrecordid>eNp9kcuKHCEYhSUkkM4kL5CVkLUzv9qWXcthyKVhSGBy3YnlpdqhWitqE-pV8rSxp0JmF1yIeL7j8T8IvaZwSQHkVaGUwpYAAwJbKQVZnqANFZITAbx7ijYAnBGQ_Y_n6EUp93A-026Dfu-tizX4YHQNKeLk8ex0xXWZHdbR4sPp-Hg7LHjSQ8q6przgbx_3d1efv-_v8KGpc5mdqVlPOBz1GOL4z2vOyYfJFfwr1AP2yZwKbmbeRTKkETcmlvDgHyLWetb4GLIrL9Ezr6fiXv3dL9DXd2-_3Hwgt5_e72-ub4nZAquk70SnxWCp7e3O8M4xya0wVsgdM1ZbR6H3HewMuA7YsGXABfNeMqrB9VzwC_Rm9W05f55cqeo-nXJsTyrWpkd7uZOsqS5X1agnp0L0qeU2bVl3DCZFd_6ium5hKJUguwawFTA5lZKdV3Nuk8mLoqDOpam1NNVKUw-lqaVBfIVKE8fR5ccs_6H-AGHRnJY</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2503197872</pqid></control><display><type>article</type><title>Identification of peat type and humification by laboratory VNIR/SWIR hyperspectral imaging of peat profiles with focus on fen-bog transition in aapa mires</title><source>SpringerLink Journals - AutoHoldings</source><creator>Granlund, L. ; Keinänen, M. ; Tahvanainen, T.</creator><creatorcontrib>Granlund, L. ; Keinänen, M. ; Tahvanainen, T.</creatorcontrib><description>Aims
Hyperspectral imaging (HSI) has high potential for analysing peat cores, but methodologies are deficient. We aimed for robust peat type classification and humification estimation. We also explored other factors affecting peat spectral properties.
Methods
We used two laboratory setups: VNIR (visible to near-infrared) and SWIR (shortwave infrared) for high resolution imaging of intact peat profiles with fen-bog transitions. Peat types were classified with support vector machines, indices were developed for von Post estimation, and K-means clustering was used to analyse stratigraphic patterns in peat quality. With separate experiments, we studied spectral effects of drying and oxidation.
Results
Despite major effects, oxidation and water content did not impede robust HSI classification. The accuracy between
Carex
peat and
Sphagnum
peat in validation was 80% with VNIR and 81% with SWIR data. The spectral humification indices had accuracies of 82% with VNIR and 56%. Stratigraphic HSI patterns revealed that 36% of peat layer shifts were inclined by over 20 degrees. Spectral indices were used to extrapolate visualisations of element concentrations.
Conclusions
HSI provided reliable information of basic peat quality and was useful in visual mapping, that can guide sampling for other analyses. HSI can manage large amounts of samples to widen the scope of detailed analysis beyond single profiles and it has wide potential in peat research beyond the exploratory scope of this paper. We were able to confirm the capacity of HSI to reveal shifts of peat quality, connected to ecosystem-scale change.</description><identifier>ISSN: 0032-079X</identifier><identifier>EISSN: 1573-5036</identifier><identifier>DOI: 10.1007/s11104-020-04775-y</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Biomedical and Life Sciences ; Bogs ; Chemical properties ; Classification ; Cluster analysis ; Clustering ; Drying ; Ecology ; Environmental aspects ; Fens ; Humic acid ; Humification ; Hyperspectral imaging ; Identification and classification ; Image resolution ; Laboratories ; Life Sciences ; Methods Paper ; Moisture content ; Oxidation ; Peat ; Plant Physiology ; Plant Sciences ; Robustness ; Short wave radiation ; Soil Science & Conservation ; Spectra ; Stratigraphy ; Support vector machines ; Vector quantization ; Water content</subject><ispartof>Plant and soil, 2021-03, Vol.460 (1-2), p.667-686</ispartof><rights>The Author(s) 2020</rights><rights>COPYRIGHT 2021 Springer</rights><rights>The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c402t-9656a5bd1d9d8c36e273d5cd5782cdade109f608c0e602b420352ff721a0e9353</citedby><cites>FETCH-LOGICAL-c402t-9656a5bd1d9d8c36e273d5cd5782cdade109f608c0e602b420352ff721a0e9353</cites><orcidid>0000-0002-3819-2234</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11104-020-04775-y$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11104-020-04775-y$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids></links><search><creatorcontrib>Granlund, L.</creatorcontrib><creatorcontrib>Keinänen, M.</creatorcontrib><creatorcontrib>Tahvanainen, T.</creatorcontrib><title>Identification of peat type and humification by laboratory VNIR/SWIR hyperspectral imaging of peat profiles with focus on fen-bog transition in aapa mires</title><title>Plant and soil</title><addtitle>Plant Soil</addtitle><description>Aims
Hyperspectral imaging (HSI) has high potential for analysing peat cores, but methodologies are deficient. We aimed for robust peat type classification and humification estimation. We also explored other factors affecting peat spectral properties.
Methods
We used two laboratory setups: VNIR (visible to near-infrared) and SWIR (shortwave infrared) for high resolution imaging of intact peat profiles with fen-bog transitions. Peat types were classified with support vector machines, indices were developed for von Post estimation, and K-means clustering was used to analyse stratigraphic patterns in peat quality. With separate experiments, we studied spectral effects of drying and oxidation.
Results
Despite major effects, oxidation and water content did not impede robust HSI classification. The accuracy between
Carex
peat and
Sphagnum
peat in validation was 80% with VNIR and 81% with SWIR data. The spectral humification indices had accuracies of 82% with VNIR and 56%. Stratigraphic HSI patterns revealed that 36% of peat layer shifts were inclined by over 20 degrees. Spectral indices were used to extrapolate visualisations of element concentrations.
Conclusions
HSI provided reliable information of basic peat quality and was useful in visual mapping, that can guide sampling for other analyses. HSI can manage large amounts of samples to widen the scope of detailed analysis beyond single profiles and it has wide potential in peat research beyond the exploratory scope of this paper. We were able to confirm the capacity of HSI to reveal shifts of peat quality, connected to ecosystem-scale change.</description><subject>Biomedical and Life Sciences</subject><subject>Bogs</subject><subject>Chemical properties</subject><subject>Classification</subject><subject>Cluster analysis</subject><subject>Clustering</subject><subject>Drying</subject><subject>Ecology</subject><subject>Environmental aspects</subject><subject>Fens</subject><subject>Humic acid</subject><subject>Humification</subject><subject>Hyperspectral imaging</subject><subject>Identification and classification</subject><subject>Image resolution</subject><subject>Laboratories</subject><subject>Life Sciences</subject><subject>Methods Paper</subject><subject>Moisture content</subject><subject>Oxidation</subject><subject>Peat</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Robustness</subject><subject>Short wave radiation</subject><subject>Soil Science & Conservation</subject><subject>Spectra</subject><subject>Stratigraphy</subject><subject>Support vector machines</subject><subject>Vector quantization</subject><subject>Water content</subject><issn>0032-079X</issn><issn>1573-5036</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kcuKHCEYhSUkkM4kL5CVkLUzv9qWXcthyKVhSGBy3YnlpdqhWitqE-pV8rSxp0JmF1yIeL7j8T8IvaZwSQHkVaGUwpYAAwJbKQVZnqANFZITAbx7ijYAnBGQ_Y_n6EUp93A-026Dfu-tizX4YHQNKeLk8ex0xXWZHdbR4sPp-Hg7LHjSQ8q6przgbx_3d1efv-_v8KGpc5mdqVlPOBz1GOL4z2vOyYfJFfwr1AP2yZwKbmbeRTKkETcmlvDgHyLWetb4GLIrL9Ezr6fiXv3dL9DXd2-_3Hwgt5_e72-ub4nZAquk70SnxWCp7e3O8M4xya0wVsgdM1ZbR6H3HewMuA7YsGXABfNeMqrB9VzwC_Rm9W05f55cqeo-nXJsTyrWpkd7uZOsqS5X1agnp0L0qeU2bVl3DCZFd_6ium5hKJUguwawFTA5lZKdV3Nuk8mLoqDOpam1NNVKUw-lqaVBfIVKE8fR5ccs_6H-AGHRnJY</recordid><startdate>20210301</startdate><enddate>20210301</enddate><creator>Granlund, L.</creator><creator>Keinänen, M.</creator><creator>Tahvanainen, T.</creator><general>Springer International Publishing</general><general>Springer</general><general>Springer Nature B.V</general><scope>C6C</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SN</scope><scope>7ST</scope><scope>7T7</scope><scope>7X2</scope><scope>88A</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>SOI</scope><orcidid>https://orcid.org/0000-0002-3819-2234</orcidid></search><sort><creationdate>20210301</creationdate><title>Identification of peat type and humification by laboratory VNIR/SWIR hyperspectral imaging of peat profiles with focus on fen-bog transition in aapa mires</title><author>Granlund, L. ; Keinänen, M. ; Tahvanainen, T.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c402t-9656a5bd1d9d8c36e273d5cd5782cdade109f608c0e602b420352ff721a0e9353</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Biomedical and Life Sciences</topic><topic>Bogs</topic><topic>Chemical properties</topic><topic>Classification</topic><topic>Cluster analysis</topic><topic>Clustering</topic><topic>Drying</topic><topic>Ecology</topic><topic>Environmental aspects</topic><topic>Fens</topic><topic>Humic acid</topic><topic>Humification</topic><topic>Hyperspectral imaging</topic><topic>Identification and classification</topic><topic>Image resolution</topic><topic>Laboratories</topic><topic>Life Sciences</topic><topic>Methods Paper</topic><topic>Moisture content</topic><topic>Oxidation</topic><topic>Peat</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Robustness</topic><topic>Short wave radiation</topic><topic>Soil Science & Conservation</topic><topic>Spectra</topic><topic>Stratigraphy</topic><topic>Support vector machines</topic><topic>Vector quantization</topic><topic>Water content</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Granlund, L.</creatorcontrib><creatorcontrib>Keinänen, M.</creatorcontrib><creatorcontrib>Tahvanainen, T.</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Ecology Abstracts</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Agricultural Science Collection</collection><collection>Biology Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><jtitle>Plant and soil</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Granlund, L.</au><au>Keinänen, M.</au><au>Tahvanainen, T.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Identification of peat type and humification by laboratory VNIR/SWIR hyperspectral imaging of peat profiles with focus on fen-bog transition in aapa mires</atitle><jtitle>Plant and soil</jtitle><stitle>Plant Soil</stitle><date>2021-03-01</date><risdate>2021</risdate><volume>460</volume><issue>1-2</issue><spage>667</spage><epage>686</epage><pages>667-686</pages><issn>0032-079X</issn><eissn>1573-5036</eissn><abstract>Aims
Hyperspectral imaging (HSI) has high potential for analysing peat cores, but methodologies are deficient. We aimed for robust peat type classification and humification estimation. We also explored other factors affecting peat spectral properties.
Methods
We used two laboratory setups: VNIR (visible to near-infrared) and SWIR (shortwave infrared) for high resolution imaging of intact peat profiles with fen-bog transitions. Peat types were classified with support vector machines, indices were developed for von Post estimation, and K-means clustering was used to analyse stratigraphic patterns in peat quality. With separate experiments, we studied spectral effects of drying and oxidation.
Results
Despite major effects, oxidation and water content did not impede robust HSI classification. The accuracy between
Carex
peat and
Sphagnum
peat in validation was 80% with VNIR and 81% with SWIR data. The spectral humification indices had accuracies of 82% with VNIR and 56%. Stratigraphic HSI patterns revealed that 36% of peat layer shifts were inclined by over 20 degrees. Spectral indices were used to extrapolate visualisations of element concentrations.
Conclusions
HSI provided reliable information of basic peat quality and was useful in visual mapping, that can guide sampling for other analyses. HSI can manage large amounts of samples to widen the scope of detailed analysis beyond single profiles and it has wide potential in peat research beyond the exploratory scope of this paper. We were able to confirm the capacity of HSI to reveal shifts of peat quality, connected to ecosystem-scale change.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><doi>10.1007/s11104-020-04775-y</doi><tpages>20</tpages><orcidid>https://orcid.org/0000-0002-3819-2234</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Biomedical and Life Sciences Bogs Chemical properties Classification Cluster analysis Clustering Drying Ecology Environmental aspects Fens Humic acid Humification Hyperspectral imaging Identification and classification Image resolution Laboratories Life Sciences Methods Paper Moisture content Oxidation Peat Plant Physiology Plant Sciences Robustness Short wave radiation Soil Science & Conservation Spectra Stratigraphy Support vector machines Vector quantization Water content |
title | Identification of peat type and humification by laboratory VNIR/SWIR hyperspectral imaging of peat profiles with focus on fen-bog transition in aapa mires |
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