Mapping QTLs controlling low-temperature germinability in rice by using single segment substitution lines derived from 4 AA-genome species of wild rice
Rice growth is sensitive to low temperature. Chilling injury is one of the main natural disasters in rice cultivation, and is damaging to rice growth at all developmental stages. Low-temperature germinability (LTG) is an important trait for seedling establishment, especially in rice direct-sowing pr...
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| creator | Pei, Ruiqin Zhang, Zhengao Huang, Mingchuan Hou, Guangshan Luo, Jijing Zhu, Haitao Liu, GuiFu Fu, Xuelin Zhang, Guiquan Wang, Shaokui |
| description | Rice growth is sensitive to low temperature. Chilling injury is one of the main natural disasters in rice cultivation, and is damaging to rice growth at all developmental stages. Low-temperature germinability (LTG) is an important trait for seedling establishment, especially in rice direct-sowing practice. However, the genetic mechanism of LTG remains elusive. Here, we report the mapping of QTLs controlling LTG in rice using 586 single segment substitution lines (SSSL) derived from 4 AA-genome wild rice species. 21 SSSLs with the highest germination rate at low temperature in both of the two tested seasons were selected, from them 10 QTLs controlling LTG were identified by substitution mapping to locate on 6 chromosomes: chromosome 1, 3, 5, 7, 8 and 11, with an interval length of 3.45 to 20.15 cM. Five QTLs were detected from Niv-SSSls:
qLTGn3-1
,
qLTGn5-1
,
qLTGn5-3
,
qLTGn7-1
and
qLTGn7-2
, their additive effects ranged from 3.72% to 19.74% in late season 2018.
qLTGb1-1
and
qLTGb8-2
were detected in the SSSLs with
O. barthii
as the donor and they accounted for at least 9.51% of the total phenotypic variation. Two QTLs,
qLTGg5-2
and
qLTGg8-1
, were derived from
O. glumaepatula,
and their average additive effects were 4.28% and 20.39% in late seasons 2018, respectively.
qLTGm11-1
on chromosome 11 was the only QTL identified from
O. meridionalis
. All QTLs derived from wild rice species improved low-temperature germination significantly. The SSSL library with wild rice species as donor is therefore a valuable resource for rice germplasm innovation and the breeding of chilling-resistant varieties. |
| doi_str_mv | 10.1007/s10681-021-02791-2 |
| format | Article |
| fullrecord | <record><control><sourceid>gale_proqu</sourceid><recordid>TN_cdi_proquest_journals_2500686605</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A714071867</galeid><sourcerecordid>A714071867</sourcerecordid><originalsourceid>FETCH-LOGICAL-c386t-85a92addd6af2bd7f6774e1893686ced554caa9e8150673b6f0bd7924368cc3f3</originalsourceid><addsrcrecordid>eNp9kdFqHCEUhiW0kO22L5ArodemOs7ozOUS2qawIRTSa3Gc42CY0Yk6Dfskfd062UIolCJ64Pj9v3J-hK4YvWaUyk-JUdEyQqtty46R6gLtWCM5aaigb9COUlaTinNxid6l9Egp7WRDd-jXnV4W50f8_eGYsAk-xzBNW2MKzyTDvEDUeY2AR4iz87p3k8sn7DyOzgDuT3hNG74dE-AE4ww-47T2Kbu8Zhc8Ln6Q8ADR_YQB2xhmXOPDgYzgw1w0CxhXgGDxs5uGF-P36K3VU4IPf-oe_fjy-eHmlhzvv367ORyJ4a3IpG10V-lhGIS2VT9IK6SsgbUdF60wMDRNbbTuoGVlDpL3wtJCdVVd7o3hlu_Rx7PvEsPTCimrx7BGX55UVUPLUIWgzSs16gmU8zbkqM3sklEHyWoqWVvc9-j6H1RZA8yujBasK_2_BNVZYGJIKYJVS3SzjifFqNpyVedcVclVveSqqiLiZ1EqsC-pvP74P6rfoTOm7Q</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2500686605</pqid></control><display><type>article</type><title>Mapping QTLs controlling low-temperature germinability in rice by using single segment substitution lines derived from 4 AA-genome species of wild rice</title><source>SpringerNature Journals</source><creator>Pei, Ruiqin ; Zhang, Zhengao ; Huang, Mingchuan ; Hou, Guangshan ; Luo, Jijing ; Zhu, Haitao ; Liu, GuiFu ; Fu, Xuelin ; Zhang, Guiquan ; Wang, Shaokui</creator><creatorcontrib>Pei, Ruiqin ; Zhang, Zhengao ; Huang, Mingchuan ; Hou, Guangshan ; Luo, Jijing ; Zhu, Haitao ; Liu, GuiFu ; Fu, Xuelin ; Zhang, Guiquan ; Wang, Shaokui</creatorcontrib><description>Rice growth is sensitive to low temperature. Chilling injury is one of the main natural disasters in rice cultivation, and is damaging to rice growth at all developmental stages. Low-temperature germinability (LTG) is an important trait for seedling establishment, especially in rice direct-sowing practice. However, the genetic mechanism of LTG remains elusive. Here, we report the mapping of QTLs controlling LTG in rice using 586 single segment substitution lines (SSSL) derived from 4 AA-genome wild rice species. 21 SSSLs with the highest germination rate at low temperature in both of the two tested seasons were selected, from them 10 QTLs controlling LTG were identified by substitution mapping to locate on 6 chromosomes: chromosome 1, 3, 5, 7, 8 and 11, with an interval length of 3.45 to 20.15 cM. Five QTLs were detected from Niv-SSSls:
qLTGn3-1
,
qLTGn5-1
,
qLTGn5-3
,
qLTGn7-1
and
qLTGn7-2
, their additive effects ranged from 3.72% to 19.74% in late season 2018.
qLTGb1-1
and
qLTGb8-2
were detected in the SSSLs with
O. barthii
as the donor and they accounted for at least 9.51% of the total phenotypic variation. Two QTLs,
qLTGg5-2
and
qLTGg8-1
, were derived from
O. glumaepatula,
and their average additive effects were 4.28% and 20.39% in late seasons 2018, respectively.
qLTGm11-1
on chromosome 11 was the only QTL identified from
O. meridionalis
. All QTLs derived from wild rice species improved low-temperature germination significantly. The SSSL library with wild rice species as donor is therefore a valuable resource for rice germplasm innovation and the breeding of chilling-resistant varieties.</description><identifier>ISSN: 0014-2336</identifier><identifier>EISSN: 1573-5060</identifier><identifier>DOI: 10.1007/s10681-021-02791-2</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Biomedical and Life Sciences ; Biotechnology ; Chilling ; Chromosome 1 ; Chromosome 11 ; Chromosomes ; Cooling ; Cultivation ; Developmental stages ; Gene mapping ; Genomes ; Genomics ; Germinability ; Germination ; Germplasm ; Grain cultivation ; Life Sciences ; Low temperature ; Mapping ; Natural disasters ; Phenotypic variations ; Plant breeding ; Plant Genetics and Genomics ; Plant Pathology ; Plant Physiology ; Plant Sciences ; Quantitative genetics ; Quantitative trait loci ; Rice ; Seasons ; Seedlings ; Segments ; Species ; Substitutes</subject><ispartof>Euphytica, 2021-04, Vol.217 (4), Article 58</ispartof><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2021</rights><rights>COPYRIGHT 2021 Springer</rights><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2021.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c386t-85a92addd6af2bd7f6774e1893686ced554caa9e8150673b6f0bd7924368cc3f3</citedby><cites>FETCH-LOGICAL-c386t-85a92addd6af2bd7f6774e1893686ced554caa9e8150673b6f0bd7924368cc3f3</cites><orcidid>0000-0002-7767-4033</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10681-021-02791-2$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10681-021-02791-2$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids></links><search><creatorcontrib>Pei, Ruiqin</creatorcontrib><creatorcontrib>Zhang, Zhengao</creatorcontrib><creatorcontrib>Huang, Mingchuan</creatorcontrib><creatorcontrib>Hou, Guangshan</creatorcontrib><creatorcontrib>Luo, Jijing</creatorcontrib><creatorcontrib>Zhu, Haitao</creatorcontrib><creatorcontrib>Liu, GuiFu</creatorcontrib><creatorcontrib>Fu, Xuelin</creatorcontrib><creatorcontrib>Zhang, Guiquan</creatorcontrib><creatorcontrib>Wang, Shaokui</creatorcontrib><title>Mapping QTLs controlling low-temperature germinability in rice by using single segment substitution lines derived from 4 AA-genome species of wild rice</title><title>Euphytica</title><addtitle>Euphytica</addtitle><description>Rice growth is sensitive to low temperature. Chilling injury is one of the main natural disasters in rice cultivation, and is damaging to rice growth at all developmental stages. Low-temperature germinability (LTG) is an important trait for seedling establishment, especially in rice direct-sowing practice. However, the genetic mechanism of LTG remains elusive. Here, we report the mapping of QTLs controlling LTG in rice using 586 single segment substitution lines (SSSL) derived from 4 AA-genome wild rice species. 21 SSSLs with the highest germination rate at low temperature in both of the two tested seasons were selected, from them 10 QTLs controlling LTG were identified by substitution mapping to locate on 6 chromosomes: chromosome 1, 3, 5, 7, 8 and 11, with an interval length of 3.45 to 20.15 cM. Five QTLs were detected from Niv-SSSls:
qLTGn3-1
,
qLTGn5-1
,
qLTGn5-3
,
qLTGn7-1
and
qLTGn7-2
, their additive effects ranged from 3.72% to 19.74% in late season 2018.
qLTGb1-1
and
qLTGb8-2
were detected in the SSSLs with
O. barthii
as the donor and they accounted for at least 9.51% of the total phenotypic variation. Two QTLs,
qLTGg5-2
and
qLTGg8-1
, were derived from
O. glumaepatula,
and their average additive effects were 4.28% and 20.39% in late seasons 2018, respectively.
qLTGm11-1
on chromosome 11 was the only QTL identified from
O. meridionalis
. All QTLs derived from wild rice species improved low-temperature germination significantly. The SSSL library with wild rice species as donor is therefore a valuable resource for rice germplasm innovation and the breeding of chilling-resistant varieties.</description><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Chilling</subject><subject>Chromosome 1</subject><subject>Chromosome 11</subject><subject>Chromosomes</subject><subject>Cooling</subject><subject>Cultivation</subject><subject>Developmental stages</subject><subject>Gene mapping</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Germinability</subject><subject>Germination</subject><subject>Germplasm</subject><subject>Grain cultivation</subject><subject>Life Sciences</subject><subject>Low temperature</subject><subject>Mapping</subject><subject>Natural disasters</subject><subject>Phenotypic variations</subject><subject>Plant breeding</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Pathology</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Quantitative genetics</subject><subject>Quantitative trait loci</subject><subject>Rice</subject><subject>Seasons</subject><subject>Seedlings</subject><subject>Segments</subject><subject>Species</subject><subject>Substitutes</subject><issn>0014-2336</issn><issn>1573-5060</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kdFqHCEUhiW0kO22L5ArodemOs7ozOUS2qawIRTSa3Gc42CY0Yk6Dfskfd062UIolCJ64Pj9v3J-hK4YvWaUyk-JUdEyQqtty46R6gLtWCM5aaigb9COUlaTinNxid6l9Egp7WRDd-jXnV4W50f8_eGYsAk-xzBNW2MKzyTDvEDUeY2AR4iz87p3k8sn7DyOzgDuT3hNG74dE-AE4ww-47T2Kbu8Zhc8Ln6Q8ADR_YQB2xhmXOPDgYzgw1w0CxhXgGDxs5uGF-P36K3VU4IPf-oe_fjy-eHmlhzvv367ORyJ4a3IpG10V-lhGIS2VT9IK6SsgbUdF60wMDRNbbTuoGVlDpL3wtJCdVVd7o3hlu_Rx7PvEsPTCimrx7BGX55UVUPLUIWgzSs16gmU8zbkqM3sklEHyWoqWVvc9-j6H1RZA8yujBasK_2_BNVZYGJIKYJVS3SzjifFqNpyVedcVclVveSqqiLiZ1EqsC-pvP74P6rfoTOm7Q</recordid><startdate>20210401</startdate><enddate>20210401</enddate><creator>Pei, Ruiqin</creator><creator>Zhang, Zhengao</creator><creator>Huang, Mingchuan</creator><creator>Hou, Guangshan</creator><creator>Luo, Jijing</creator><creator>Zhu, Haitao</creator><creator>Liu, GuiFu</creator><creator>Fu, Xuelin</creator><creator>Zhang, Guiquan</creator><creator>Wang, Shaokui</creator><general>Springer Netherlands</general><general>Springer</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SN</scope><scope>7SS</scope><scope>7T7</scope><scope>7TM</scope><scope>7X2</scope><scope>7XB</scope><scope>88I</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>M0K</scope><scope>M2P</scope><scope>M7N</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0002-7767-4033</orcidid></search><sort><creationdate>20210401</creationdate><title>Mapping QTLs controlling low-temperature germinability in rice by using single segment substitution lines derived from 4 AA-genome species of wild rice</title><author>Pei, Ruiqin ; Zhang, Zhengao ; Huang, Mingchuan ; Hou, Guangshan ; Luo, Jijing ; Zhu, Haitao ; Liu, GuiFu ; Fu, Xuelin ; Zhang, Guiquan ; Wang, Shaokui</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c386t-85a92addd6af2bd7f6774e1893686ced554caa9e8150673b6f0bd7924368cc3f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Chilling</topic><topic>Chromosome 1</topic><topic>Chromosome 11</topic><topic>Chromosomes</topic><topic>Cooling</topic><topic>Cultivation</topic><topic>Developmental stages</topic><topic>Gene mapping</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Germinability</topic><topic>Germination</topic><topic>Germplasm</topic><topic>Grain cultivation</topic><topic>Life Sciences</topic><topic>Low temperature</topic><topic>Mapping</topic><topic>Natural disasters</topic><topic>Phenotypic variations</topic><topic>Plant breeding</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Pathology</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Quantitative genetics</topic><topic>Quantitative trait loci</topic><topic>Rice</topic><topic>Seasons</topic><topic>Seedlings</topic><topic>Segments</topic><topic>Species</topic><topic>Substitutes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Pei, Ruiqin</creatorcontrib><creatorcontrib>Zhang, Zhengao</creatorcontrib><creatorcontrib>Huang, Mingchuan</creatorcontrib><creatorcontrib>Hou, Guangshan</creatorcontrib><creatorcontrib>Luo, Jijing</creatorcontrib><creatorcontrib>Zhu, Haitao</creatorcontrib><creatorcontrib>Liu, GuiFu</creatorcontrib><creatorcontrib>Fu, Xuelin</creatorcontrib><creatorcontrib>Zhang, Guiquan</creatorcontrib><creatorcontrib>Wang, Shaokui</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Agricultural Science Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Science Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>Agricultural Science Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Environmental Science Collection</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><jtitle>Euphytica</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Pei, Ruiqin</au><au>Zhang, Zhengao</au><au>Huang, Mingchuan</au><au>Hou, Guangshan</au><au>Luo, Jijing</au><au>Zhu, Haitao</au><au>Liu, GuiFu</au><au>Fu, Xuelin</au><au>Zhang, Guiquan</au><au>Wang, Shaokui</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Mapping QTLs controlling low-temperature germinability in rice by using single segment substitution lines derived from 4 AA-genome species of wild rice</atitle><jtitle>Euphytica</jtitle><stitle>Euphytica</stitle><date>2021-04-01</date><risdate>2021</risdate><volume>217</volume><issue>4</issue><artnum>58</artnum><issn>0014-2336</issn><eissn>1573-5060</eissn><abstract>Rice growth is sensitive to low temperature. Chilling injury is one of the main natural disasters in rice cultivation, and is damaging to rice growth at all developmental stages. Low-temperature germinability (LTG) is an important trait for seedling establishment, especially in rice direct-sowing practice. However, the genetic mechanism of LTG remains elusive. Here, we report the mapping of QTLs controlling LTG in rice using 586 single segment substitution lines (SSSL) derived from 4 AA-genome wild rice species. 21 SSSLs with the highest germination rate at low temperature in both of the two tested seasons were selected, from them 10 QTLs controlling LTG were identified by substitution mapping to locate on 6 chromosomes: chromosome 1, 3, 5, 7, 8 and 11, with an interval length of 3.45 to 20.15 cM. Five QTLs were detected from Niv-SSSls:
qLTGn3-1
,
qLTGn5-1
,
qLTGn5-3
,
qLTGn7-1
and
qLTGn7-2
, their additive effects ranged from 3.72% to 19.74% in late season 2018.
qLTGb1-1
and
qLTGb8-2
were detected in the SSSLs with
O. barthii
as the donor and they accounted for at least 9.51% of the total phenotypic variation. Two QTLs,
qLTGg5-2
and
qLTGg8-1
, were derived from
O. glumaepatula,
and their average additive effects were 4.28% and 20.39% in late seasons 2018, respectively.
qLTGm11-1
on chromosome 11 was the only QTL identified from
O. meridionalis
. All QTLs derived from wild rice species improved low-temperature germination significantly. The SSSL library with wild rice species as donor is therefore a valuable resource for rice germplasm innovation and the breeding of chilling-resistant varieties.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s10681-021-02791-2</doi><orcidid>https://orcid.org/0000-0002-7767-4033</orcidid></addata></record> |
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| subjects | Biomedical and Life Sciences Biotechnology Chilling Chromosome 1 Chromosome 11 Chromosomes Cooling Cultivation Developmental stages Gene mapping Genomes Genomics Germinability Germination Germplasm Grain cultivation Life Sciences Low temperature Mapping Natural disasters Phenotypic variations Plant breeding Plant Genetics and Genomics Plant Pathology Plant Physiology Plant Sciences Quantitative genetics Quantitative trait loci Rice Seasons Seedlings Segments Species Substitutes |
| title | Mapping QTLs controlling low-temperature germinability in rice by using single segment substitution lines derived from 4 AA-genome species of wild rice |
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