Sequence-Related Amplified Polymorphism (SRAP) Markers Based Genetic Diversity and Population Structure Analysis of Oil Palm (Elaeis guineensis Jacq.)
Oil palm ( Elaeis guineensis Jacq.) is the key vegetable oil yielded crop and widely distributed in the southern region of China. The present study aimed at analyzing the genetic diversity and population structure of 223 oil palm accessions collected from four provinces of China by using the sequenc...
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| Veröffentlicht in: | Tropical plant biology 2021-03, Vol.14 (1), p.63-71 |
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| creator | Zhou, Lixia Yarra, Rajesh Cao, Hongxing Zhao, Zhihao |
| description | Oil palm (
Elaeis guineensis
Jacq.) is the key vegetable oil yielded crop and widely distributed in the southern region of China. The present study aimed at analyzing the genetic diversity and population structure of 223 oil palm accessions collected from four provinces of China by using the sequence-related amplified polymorphism (SRAP) markers. A set of 33 SRAP molecular markers were employed to analyze genetic diversity as well as population structure across 223 oil palm accessions. Out of 514 amplified bands, 487 (94.75%) bands were found to be polymorphic. The PIC value (polymorphic information content) of detected bands was from 0.38 to 0.51, with 0.46 of average. The STRUCTURE analysis categorized the 223 oil palm accessions into three subpopulations. The UPGMA based clustering classified them into three major clusters. The correlation between the population subdivisions and the genetic relationships among oil palm accessions was revealed by UPGMA and Bayesian STRUCTURE analyses. The principal coordinate analysis also confirmed a similar grouping of accessions as revealed by the UPGMA dendrogram and STRUCTURE analysis. AMOVA analysis also revealed the variance of 24% among subpopulations and 76% within subpopulations. The present investigation provided valuable information on population structure and genetic diversity of oil palm populations in China for molecular breeding research in oil palm. |
| doi_str_mv | 10.1007/s12042-020-09273-0 |
| format | Article |
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Elaeis guineensis
Jacq.) is the key vegetable oil yielded crop and widely distributed in the southern region of China. The present study aimed at analyzing the genetic diversity and population structure of 223 oil palm accessions collected from four provinces of China by using the sequence-related amplified polymorphism (SRAP) markers. A set of 33 SRAP molecular markers were employed to analyze genetic diversity as well as population structure across 223 oil palm accessions. Out of 514 amplified bands, 487 (94.75%) bands were found to be polymorphic. The PIC value (polymorphic information content) of detected bands was from 0.38 to 0.51, with 0.46 of average. The STRUCTURE analysis categorized the 223 oil palm accessions into three subpopulations. The UPGMA based clustering classified them into three major clusters. The correlation between the population subdivisions and the genetic relationships among oil palm accessions was revealed by UPGMA and Bayesian STRUCTURE analyses. The principal coordinate analysis also confirmed a similar grouping of accessions as revealed by the UPGMA dendrogram and STRUCTURE analysis. AMOVA analysis also revealed the variance of 24% among subpopulations and 76% within subpopulations. The present investigation provided valuable information on population structure and genetic diversity of oil palm populations in China for molecular breeding research in oil palm.</description><identifier>ISSN: 1935-9756</identifier><identifier>EISSN: 1935-9764</identifier><identifier>DOI: 10.1007/s12042-020-09273-0</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Amplification ; Banded structure ; Bayesian analysis ; Biomedical and Life Sciences ; Clustering ; Elaeis guineensis ; Gene polymorphism ; Genetic analysis ; Genetic diversity ; Genetic relationship ; Life Sciences ; Markers ; Plant Breeding/Biotechnology ; Plant Ecology ; Plant Genetics and Genomics ; Plant Sciences ; Polymorphism ; Population ; Population genetics ; Population structure ; Structural analysis ; Subdivisions ; Subpopulations ; Transgenics ; Vegetable oils</subject><ispartof>Tropical plant biology, 2021-03, Vol.14 (1), p.63-71</ispartof><rights>Springer Science+Business Media, LLC, part of Springer Nature 2020</rights><rights>Springer Science+Business Media, LLC, part of Springer Nature 2020.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c319t-b8471844a1c443cb87af90ee36664eaea7dd0da1ff8db46a5f1aa29844ab13013</citedby><cites>FETCH-LOGICAL-c319t-b8471844a1c443cb87af90ee36664eaea7dd0da1ff8db46a5f1aa29844ab13013</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s12042-020-09273-0$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s12042-020-09273-0$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids></links><search><creatorcontrib>Zhou, Lixia</creatorcontrib><creatorcontrib>Yarra, Rajesh</creatorcontrib><creatorcontrib>Cao, Hongxing</creatorcontrib><creatorcontrib>Zhao, Zhihao</creatorcontrib><title>Sequence-Related Amplified Polymorphism (SRAP) Markers Based Genetic Diversity and Population Structure Analysis of Oil Palm (Elaeis guineensis Jacq.)</title><title>Tropical plant biology</title><addtitle>Tropical Plant Biol</addtitle><description>Oil palm (
Elaeis guineensis
Jacq.) is the key vegetable oil yielded crop and widely distributed in the southern region of China. The present study aimed at analyzing the genetic diversity and population structure of 223 oil palm accessions collected from four provinces of China by using the sequence-related amplified polymorphism (SRAP) markers. A set of 33 SRAP molecular markers were employed to analyze genetic diversity as well as population structure across 223 oil palm accessions. Out of 514 amplified bands, 487 (94.75%) bands were found to be polymorphic. The PIC value (polymorphic information content) of detected bands was from 0.38 to 0.51, with 0.46 of average. The STRUCTURE analysis categorized the 223 oil palm accessions into three subpopulations. The UPGMA based clustering classified them into three major clusters. The correlation between the population subdivisions and the genetic relationships among oil palm accessions was revealed by UPGMA and Bayesian STRUCTURE analyses. The principal coordinate analysis also confirmed a similar grouping of accessions as revealed by the UPGMA dendrogram and STRUCTURE analysis. AMOVA analysis also revealed the variance of 24% among subpopulations and 76% within subpopulations. The present investigation provided valuable information on population structure and genetic diversity of oil palm populations in China for molecular breeding research in oil palm.</description><subject>Amplification</subject><subject>Banded structure</subject><subject>Bayesian analysis</subject><subject>Biomedical and Life Sciences</subject><subject>Clustering</subject><subject>Elaeis guineensis</subject><subject>Gene polymorphism</subject><subject>Genetic analysis</subject><subject>Genetic diversity</subject><subject>Genetic relationship</subject><subject>Life Sciences</subject><subject>Markers</subject><subject>Plant Breeding/Biotechnology</subject><subject>Plant Ecology</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Sciences</subject><subject>Polymorphism</subject><subject>Population</subject><subject>Population genetics</subject><subject>Population structure</subject><subject>Structural analysis</subject><subject>Subdivisions</subject><subject>Subpopulations</subject><subject>Transgenics</subject><subject>Vegetable oils</subject><issn>1935-9756</issn><issn>1935-9764</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kMtOwzAQRSMEEqXwA6wssaGLFDt281iGUgqoqFULa2uSTIpLmqR2gpQf4XtxKYIdK4_G91yNjuNcMjpklAY3hnlUeC71qEsjL-AuPXJ6LOIjNwp8cfw7j_xT58yYDaU-FSzsOZ8r3LVYpugusYAGMxJv60Llyk6Lqui2la7flNmS69UyXgzIM-h31IbcgrGJKZbYqJTcqQ-7VE1HoNxzdWu7VFWSVaPbtGk1kriEojPKkConc1WQBRS2dFIA2t26VSViuf9-gnQ3HJw7JzkUBi9-3r7zej95GT-4s_n0cRzP3JSzqHGTUAQsFAJYKgRPkzCAPKKI3Pd9gYAQZBnNgOV5mCXCh1HOALxoTySMU8b7ztWht9aV9WAaualabU810hMRD0POg9CmvEMq1ZUxGnNZa7UF3UlG5d6_PPiX1r_89i-phfgBMjZcrlH_Vf9DfQEcP4nX</recordid><startdate>20210301</startdate><enddate>20210301</enddate><creator>Zhou, Lixia</creator><creator>Yarra, Rajesh</creator><creator>Cao, Hongxing</creator><creator>Zhao, Zhihao</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope></search><sort><creationdate>20210301</creationdate><title>Sequence-Related Amplified Polymorphism (SRAP) Markers Based Genetic Diversity and Population Structure Analysis of Oil Palm (Elaeis guineensis Jacq.)</title><author>Zhou, Lixia ; Yarra, Rajesh ; Cao, Hongxing ; Zhao, Zhihao</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c319t-b8471844a1c443cb87af90ee36664eaea7dd0da1ff8db46a5f1aa29844ab13013</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Amplification</topic><topic>Banded structure</topic><topic>Bayesian analysis</topic><topic>Biomedical and Life Sciences</topic><topic>Clustering</topic><topic>Elaeis guineensis</topic><topic>Gene polymorphism</topic><topic>Genetic analysis</topic><topic>Genetic diversity</topic><topic>Genetic relationship</topic><topic>Life Sciences</topic><topic>Markers</topic><topic>Plant Breeding/Biotechnology</topic><topic>Plant Ecology</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Sciences</topic><topic>Polymorphism</topic><topic>Population</topic><topic>Population genetics</topic><topic>Population structure</topic><topic>Structural analysis</topic><topic>Subdivisions</topic><topic>Subpopulations</topic><topic>Transgenics</topic><topic>Vegetable oils</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhou, Lixia</creatorcontrib><creatorcontrib>Yarra, Rajesh</creatorcontrib><creatorcontrib>Cao, Hongxing</creatorcontrib><creatorcontrib>Zhao, Zhihao</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><jtitle>Tropical plant biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhou, Lixia</au><au>Yarra, Rajesh</au><au>Cao, Hongxing</au><au>Zhao, Zhihao</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Sequence-Related Amplified Polymorphism (SRAP) Markers Based Genetic Diversity and Population Structure Analysis of Oil Palm (Elaeis guineensis Jacq.)</atitle><jtitle>Tropical plant biology</jtitle><stitle>Tropical Plant Biol</stitle><date>2021-03-01</date><risdate>2021</risdate><volume>14</volume><issue>1</issue><spage>63</spage><epage>71</epage><pages>63-71</pages><issn>1935-9756</issn><eissn>1935-9764</eissn><abstract>Oil palm (
Elaeis guineensis
Jacq.) is the key vegetable oil yielded crop and widely distributed in the southern region of China. The present study aimed at analyzing the genetic diversity and population structure of 223 oil palm accessions collected from four provinces of China by using the sequence-related amplified polymorphism (SRAP) markers. A set of 33 SRAP molecular markers were employed to analyze genetic diversity as well as population structure across 223 oil palm accessions. Out of 514 amplified bands, 487 (94.75%) bands were found to be polymorphic. The PIC value (polymorphic information content) of detected bands was from 0.38 to 0.51, with 0.46 of average. The STRUCTURE analysis categorized the 223 oil palm accessions into three subpopulations. The UPGMA based clustering classified them into three major clusters. The correlation between the population subdivisions and the genetic relationships among oil palm accessions was revealed by UPGMA and Bayesian STRUCTURE analyses. The principal coordinate analysis also confirmed a similar grouping of accessions as revealed by the UPGMA dendrogram and STRUCTURE analysis. AMOVA analysis also revealed the variance of 24% among subpopulations and 76% within subpopulations. The present investigation provided valuable information on population structure and genetic diversity of oil palm populations in China for molecular breeding research in oil palm.</abstract><cop>New York</cop><pub>Springer US</pub><doi>10.1007/s12042-020-09273-0</doi><tpages>9</tpages></addata></record> |
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| subjects | Amplification Banded structure Bayesian analysis Biomedical and Life Sciences Clustering Elaeis guineensis Gene polymorphism Genetic analysis Genetic diversity Genetic relationship Life Sciences Markers Plant Breeding/Biotechnology Plant Ecology Plant Genetics and Genomics Plant Sciences Polymorphism Population Population genetics Population structure Structural analysis Subdivisions Subpopulations Transgenics Vegetable oils |
| title | Sequence-Related Amplified Polymorphism (SRAP) Markers Based Genetic Diversity and Population Structure Analysis of Oil Palm (Elaeis guineensis Jacq.) |
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