The response of the soil bacterial community and function to forest succession caused by forest disease
Forest succession is a key driver of plant communities and understanding succession is central to forest restoration. Currently, the information on the response of the microbial community to the forest succession process, however, is limited. In the present study, we investigated the dynamics of the...
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| Veröffentlicht in: | Functional ecology 2020-12, Vol.34 (12), p.2548-2559 |
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| creator | Qu, Zhao‐Lei Liu, Bing Ma, Yang Xu, Jie Sun, Hui Gallery, Rachel |
| description | Forest succession is a key driver of plant communities and understanding succession is central to forest restoration. Currently, the information on the response of the microbial community to the forest succession process, however, is limited. In the present study, we investigated the dynamics of the soil bacterial community in three forest types undergoing succession caused by pine wilt disease, representing the initial pine forest, gradual mixed pine and broadleaved forest, and eventual broadleaved forest, using Illumina MiSeq coupled with Functional Annotation of Prokaryotic Taxa (FAPROTAX) analysis.
The results showed that the soil pH, contents of soil organic carbon (SOC) and soil total nitrogen (TN) increased after the occurrence of initial succession and differed among the forest sites. The mixed pine forest had significantly higher bacteria biomass (p |
| doi_str_mv | 10.1111/1365-2435.13665 |
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The results showed that the soil pH, contents of soil organic carbon (SOC) and soil total nitrogen (TN) increased after the occurrence of initial succession and differed among the forest sites. The mixed pine forest had significantly higher bacteria biomass (p < 0.05), whereas, the total microbial biomass did not differ during the succession. The bacterial community diversity and richness increased significantly following the succession process (p < 0.05). Proteobacteria, Actinobacteria, Acidobacteria and Bacteroidetes were the dominant phyla across the succession, in which the abundance of Bacteroidetes significantly increased (p < 0.05), whereas, Planctomycetes, WPS‐2 and Burkholder decreased in abundance after succession occurred (p < 0.05).
The three forests formed distinct bacterial community structures during the succession (p < 0.05), whereas, only two functional structures were clustered, in which the mixed and pure broadleaved forest did not differ. The dominant functional groups involved in the C cycle in the initial pure pine forest were replaced gradually by the groups involved in N and S cycles following the subsequent succession. The soil pH, soil TN and SOC were the most important factors affecting the bacterial community and functional structures during the succession.
These results indicate that the bacterial community and function shift drastically in the early stages of succession, which reflects the changes in ecological environment caused by succession. The findings provide useful information to better understand the response of microbes to natural forest disturbance and highlight the importance of microbes during forest succession.
A free Plain Language Summary can be found within the Supporting Information of this article.
A free Plain Language Summary can be found within the Supporting Information of this article.</description><identifier>ISSN: 0269-8463</identifier><identifier>EISSN: 1365-2435</identifier><identifier>DOI: 10.1111/1365-2435.13665</identifier><language>eng</language><publisher>London: Wiley Subscription Services, Inc</publisher><subject>Abundance ; Annotations ; Bacteria ; bacterial community structure ; Bacteroidetes ; Biomass ; community potential function ; Coniferous forests ; Ecological effects ; Ecological succession ; Forest biomass ; forest disease ; Forest management ; forest succession ; Forests ; Functional groups ; Illumina MiSeq ; Microorganisms ; Nitrogen ; Organic carbon ; Organic soils ; pH effects ; Plant communities ; Plant populations ; Soil chemistry ; Soil dynamics ; Soil investigations ; Soil microorganisms ; Soil pH ; Soils ; Wilt</subject><ispartof>Functional ecology, 2020-12, Vol.34 (12), p.2548-2559</ispartof><rights>2020 British Ecological Society</rights><rights>Functional Ecology © 2020 British Ecological Society</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3565-a82ba5375078017570f20903474c1c2064fd10a862a9272646450d0e3ab9afe43</citedby><cites>FETCH-LOGICAL-c3565-a82ba5375078017570f20903474c1c2064fd10a862a9272646450d0e3ab9afe43</cites><orcidid>0000-0003-2015-6136</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2F1365-2435.13665$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2F1365-2435.13665$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,1433,27924,27925,45574,45575,46409,46833</link.rule.ids></links><search><contributor>Gallery, Rachel</contributor><creatorcontrib>Qu, Zhao‐Lei</creatorcontrib><creatorcontrib>Liu, Bing</creatorcontrib><creatorcontrib>Ma, Yang</creatorcontrib><creatorcontrib>Xu, Jie</creatorcontrib><creatorcontrib>Sun, Hui</creatorcontrib><creatorcontrib>Gallery, Rachel</creatorcontrib><title>The response of the soil bacterial community and function to forest succession caused by forest disease</title><title>Functional ecology</title><description>Forest succession is a key driver of plant communities and understanding succession is central to forest restoration. Currently, the information on the response of the microbial community to the forest succession process, however, is limited. In the present study, we investigated the dynamics of the soil bacterial community in three forest types undergoing succession caused by pine wilt disease, representing the initial pine forest, gradual mixed pine and broadleaved forest, and eventual broadleaved forest, using Illumina MiSeq coupled with Functional Annotation of Prokaryotic Taxa (FAPROTAX) analysis.
The results showed that the soil pH, contents of soil organic carbon (SOC) and soil total nitrogen (TN) increased after the occurrence of initial succession and differed among the forest sites. The mixed pine forest had significantly higher bacteria biomass (p < 0.05), whereas, the total microbial biomass did not differ during the succession. The bacterial community diversity and richness increased significantly following the succession process (p < 0.05). Proteobacteria, Actinobacteria, Acidobacteria and Bacteroidetes were the dominant phyla across the succession, in which the abundance of Bacteroidetes significantly increased (p < 0.05), whereas, Planctomycetes, WPS‐2 and Burkholder decreased in abundance after succession occurred (p < 0.05).
The three forests formed distinct bacterial community structures during the succession (p < 0.05), whereas, only two functional structures were clustered, in which the mixed and pure broadleaved forest did not differ. The dominant functional groups involved in the C cycle in the initial pure pine forest were replaced gradually by the groups involved in N and S cycles following the subsequent succession. The soil pH, soil TN and SOC were the most important factors affecting the bacterial community and functional structures during the succession.
These results indicate that the bacterial community and function shift drastically in the early stages of succession, which reflects the changes in ecological environment caused by succession. The findings provide useful information to better understand the response of microbes to natural forest disturbance and highlight the importance of microbes during forest succession.
A free Plain Language Summary can be found within the Supporting Information of this article.
A free Plain Language Summary can be found within the Supporting Information of this article.</description><subject>Abundance</subject><subject>Annotations</subject><subject>Bacteria</subject><subject>bacterial community structure</subject><subject>Bacteroidetes</subject><subject>Biomass</subject><subject>community potential function</subject><subject>Coniferous forests</subject><subject>Ecological effects</subject><subject>Ecological succession</subject><subject>Forest biomass</subject><subject>forest disease</subject><subject>Forest management</subject><subject>forest succession</subject><subject>Forests</subject><subject>Functional groups</subject><subject>Illumina MiSeq</subject><subject>Microorganisms</subject><subject>Nitrogen</subject><subject>Organic carbon</subject><subject>Organic soils</subject><subject>pH effects</subject><subject>Plant communities</subject><subject>Plant populations</subject><subject>Soil chemistry</subject><subject>Soil dynamics</subject><subject>Soil investigations</subject><subject>Soil microorganisms</subject><subject>Soil pH</subject><subject>Soils</subject><subject>Wilt</subject><issn>0269-8463</issn><issn>1365-2435</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNqFUE1PwzAMjRBIjI8z10icuzmfbY9o2gBpEpdxjtI0gU5dM5JWqP-elAJXfLH9_J5tPYTuCCxJihVhUmSUM7FMlRRnaPGHnKMFUFlmBZfsEl3FeACAUlC6QG_7d4uDjSffRYu9w33qo29aXGnT29DoFht_PA5d049YdzV2Q2f6xne499j5JO1xHIyxMU6g0UO0Na7G31ndRKujvUEXTrfR3v7ka_S63ezXT9nu5fF5_bDLDBPpW13QSguWC8gLILnIwVEogfGcG2IoSO5qArqQVJc0p5JLLqAGy3RVamc5u0b3895T8B9DekAd_BC6dFJRLnNBBC8n1mpmmeBjDNapU2iOOoyKgJrcVJN3avJOfbuZFGJWfDatHf-jq-1mPeu-ANGZdfQ</recordid><startdate>202012</startdate><enddate>202012</enddate><creator>Qu, Zhao‐Lei</creator><creator>Liu, Bing</creator><creator>Ma, Yang</creator><creator>Xu, Jie</creator><creator>Sun, Hui</creator><creator>Gallery, Rachel</creator><general>Wiley Subscription Services, Inc</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7SN</scope><scope>7SS</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0003-2015-6136</orcidid></search><sort><creationdate>202012</creationdate><title>The response of the soil bacterial community and function to forest succession caused by forest disease</title><author>Qu, Zhao‐Lei ; Liu, Bing ; Ma, Yang ; Xu, Jie ; Sun, Hui ; Gallery, Rachel</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3565-a82ba5375078017570f20903474c1c2064fd10a862a9272646450d0e3ab9afe43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Abundance</topic><topic>Annotations</topic><topic>Bacteria</topic><topic>bacterial community structure</topic><topic>Bacteroidetes</topic><topic>Biomass</topic><topic>community potential function</topic><topic>Coniferous forests</topic><topic>Ecological effects</topic><topic>Ecological succession</topic><topic>Forest biomass</topic><topic>forest disease</topic><topic>Forest management</topic><topic>forest succession</topic><topic>Forests</topic><topic>Functional groups</topic><topic>Illumina MiSeq</topic><topic>Microorganisms</topic><topic>Nitrogen</topic><topic>Organic carbon</topic><topic>Organic soils</topic><topic>pH effects</topic><topic>Plant communities</topic><topic>Plant populations</topic><topic>Soil chemistry</topic><topic>Soil dynamics</topic><topic>Soil investigations</topic><topic>Soil microorganisms</topic><topic>Soil pH</topic><topic>Soils</topic><topic>Wilt</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Qu, Zhao‐Lei</creatorcontrib><creatorcontrib>Liu, Bing</creatorcontrib><creatorcontrib>Ma, Yang</creatorcontrib><creatorcontrib>Xu, Jie</creatorcontrib><creatorcontrib>Sun, Hui</creatorcontrib><creatorcontrib>Gallery, Rachel</creatorcontrib><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Functional ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Qu, Zhao‐Lei</au><au>Liu, Bing</au><au>Ma, Yang</au><au>Xu, Jie</au><au>Sun, Hui</au><au>Gallery, Rachel</au><au>Gallery, Rachel</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The response of the soil bacterial community and function to forest succession caused by forest disease</atitle><jtitle>Functional ecology</jtitle><date>2020-12</date><risdate>2020</risdate><volume>34</volume><issue>12</issue><spage>2548</spage><epage>2559</epage><pages>2548-2559</pages><issn>0269-8463</issn><eissn>1365-2435</eissn><abstract>Forest succession is a key driver of plant communities and understanding succession is central to forest restoration. Currently, the information on the response of the microbial community to the forest succession process, however, is limited. In the present study, we investigated the dynamics of the soil bacterial community in three forest types undergoing succession caused by pine wilt disease, representing the initial pine forest, gradual mixed pine and broadleaved forest, and eventual broadleaved forest, using Illumina MiSeq coupled with Functional Annotation of Prokaryotic Taxa (FAPROTAX) analysis.
The results showed that the soil pH, contents of soil organic carbon (SOC) and soil total nitrogen (TN) increased after the occurrence of initial succession and differed among the forest sites. The mixed pine forest had significantly higher bacteria biomass (p < 0.05), whereas, the total microbial biomass did not differ during the succession. The bacterial community diversity and richness increased significantly following the succession process (p < 0.05). Proteobacteria, Actinobacteria, Acidobacteria and Bacteroidetes were the dominant phyla across the succession, in which the abundance of Bacteroidetes significantly increased (p < 0.05), whereas, Planctomycetes, WPS‐2 and Burkholder decreased in abundance after succession occurred (p < 0.05).
The three forests formed distinct bacterial community structures during the succession (p < 0.05), whereas, only two functional structures were clustered, in which the mixed and pure broadleaved forest did not differ. The dominant functional groups involved in the C cycle in the initial pure pine forest were replaced gradually by the groups involved in N and S cycles following the subsequent succession. The soil pH, soil TN and SOC were the most important factors affecting the bacterial community and functional structures during the succession.
These results indicate that the bacterial community and function shift drastically in the early stages of succession, which reflects the changes in ecological environment caused by succession. The findings provide useful information to better understand the response of microbes to natural forest disturbance and highlight the importance of microbes during forest succession.
A free Plain Language Summary can be found within the Supporting Information of this article.
A free Plain Language Summary can be found within the Supporting Information of this article.</abstract><cop>London</cop><pub>Wiley Subscription Services, Inc</pub><doi>10.1111/1365-2435.13665</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0003-2015-6136</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Abundance Annotations Bacteria bacterial community structure Bacteroidetes Biomass community potential function Coniferous forests Ecological effects Ecological succession Forest biomass forest disease Forest management forest succession Forests Functional groups Illumina MiSeq Microorganisms Nitrogen Organic carbon Organic soils pH effects Plant communities Plant populations Soil chemistry Soil dynamics Soil investigations Soil microorganisms Soil pH Soils Wilt |
| title | The response of the soil bacterial community and function to forest succession caused by forest disease |
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