Nondestructive Estimation of Circadian Time in Harvested Green Perilla Leaves Using Hyperspectral Data
The circadian clock, an internal oscillator with a period of approximately 24 hours, plays an important role in the regulation of biological processes, and an understanding of circadian rhythms can be employed to improve the quality of plant production. Many studies have measured the circadian rhyth...
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Veröffentlicht in: | Environment control in biology 2020/10/01, Vol.58(4), pp.91-97 |
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description | The circadian clock, an internal oscillator with a period of approximately 24 hours, plays an important role in the regulation of biological processes, and an understanding of circadian rhythms can be employed to improve the quality of plant production. Many studies have measured the circadian rhythms of plants and estimate their circadian times. However, the circadian time estimation methods used in previous studies are difficult to apply to commercial crops because they require extraction of plant contents such as RNA, which involves destroying plant tissues. In this study, we sought to develop a nondestructive method for estimating circadian time in harvested leaves of green perilla (Perilla frutescens var. crispa f. viridis). The results of RNA sequencing (RNA-Seq) show that the gene expression of perillyl alcohol depend on the circadian time. A hyperspectral camera captured the light reflectance of 141 wavebands from 350 to 1,050 nm on leaves, and machine learning using the reflectance data successfully estimated the circadian time corresponding to the harvest time. The study results demonstrate the potential for the nondestructive use of hyperspectral reflectance data in circadian time estimation and its applicability to improving the quality of plant production. |
doi_str_mv | 10.2525/ecb.58.91 |
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Many studies have measured the circadian rhythms of plants and estimate their circadian times. However, the circadian time estimation methods used in previous studies are difficult to apply to commercial crops because they require extraction of plant contents such as RNA, which involves destroying plant tissues. In this study, we sought to develop a nondestructive method for estimating circadian time in harvested leaves of green perilla (Perilla frutescens var. crispa f. viridis). The results of RNA sequencing (RNA-Seq) show that the gene expression of perillyl alcohol depend on the circadian time. A hyperspectral camera captured the light reflectance of 141 wavebands from 350 to 1,050 nm on leaves, and machine learning using the reflectance data successfully estimated the circadian time corresponding to the harvest time. The study results demonstrate the potential for the nondestructive use of hyperspectral reflectance data in circadian time estimation and its applicability to improving the quality of plant production.</description><identifier>ISSN: 1880-554X</identifier><identifier>EISSN: 1883-0986</identifier><identifier>DOI: 10.2525/ecb.58.91</identifier><language>eng</language><publisher>Fukuoka: Japanese Society of Agricultural, Biological and Environmental Engineers and Scientists</publisher><subject>Alcohols ; artificial neural network ; Biological activity ; Biological clocks ; Circadian rhythm ; Circadian rhythms ; Gene expression ; Gene sequencing ; hyperspectral camera ; Learning algorithms ; Leaves ; Machine learning ; metabolome analysis ; Nondestructive testing ; Nucleic acids ; Perilla frutescens var. crispa f. viridis ; Perillyl alcohol ; Plant extracts ; Plant production ; Plant tissues ; Reflectance ; Ribonucleic acid ; RNA ; RNA sequencing ; RNA-Seq</subject><ispartof>Environmental Control in Biology, 2020/10/01, Vol.58(4), pp.91-97</ispartof><rights>2020 Japanese Society of Agricultural, Biological and Environmental Engineers and Scientists</rights><rights>Copyright Japan Science and Technology Agency 2020</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c4141-58b7867584f848e5a7c9f7d5c117b98f28f8b44a30fc330c1f17237fd78fb6473</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,1883,27924,27925</link.rule.ids></links><search><creatorcontrib>NAGANO, Shogo</creatorcontrib><creatorcontrib>TANIGAKI, Yusuke</creatorcontrib><creatorcontrib>FUKUDA, Hirokazu</creatorcontrib><title>Nondestructive Estimation of Circadian Time in Harvested Green Perilla Leaves Using Hyperspectral Data</title><title>Environment control in biology</title><addtitle>Environ. Control Biol.</addtitle><description>The circadian clock, an internal oscillator with a period of approximately 24 hours, plays an important role in the regulation of biological processes, and an understanding of circadian rhythms can be employed to improve the quality of plant production. Many studies have measured the circadian rhythms of plants and estimate their circadian times. However, the circadian time estimation methods used in previous studies are difficult to apply to commercial crops because they require extraction of plant contents such as RNA, which involves destroying plant tissues. In this study, we sought to develop a nondestructive method for estimating circadian time in harvested leaves of green perilla (Perilla frutescens var. crispa f. viridis). The results of RNA sequencing (RNA-Seq) show that the gene expression of perillyl alcohol depend on the circadian time. A hyperspectral camera captured the light reflectance of 141 wavebands from 350 to 1,050 nm on leaves, and machine learning using the reflectance data successfully estimated the circadian time corresponding to the harvest time. The study results demonstrate the potential for the nondestructive use of hyperspectral reflectance data in circadian time estimation and its applicability to improving the quality of plant production.</description><subject>Alcohols</subject><subject>artificial neural network</subject><subject>Biological activity</subject><subject>Biological clocks</subject><subject>Circadian rhythm</subject><subject>Circadian rhythms</subject><subject>Gene expression</subject><subject>Gene sequencing</subject><subject>hyperspectral camera</subject><subject>Learning algorithms</subject><subject>Leaves</subject><subject>Machine learning</subject><subject>metabolome analysis</subject><subject>Nondestructive testing</subject><subject>Nucleic acids</subject><subject>Perilla frutescens var. crispa f. viridis</subject><subject>Perillyl alcohol</subject><subject>Plant extracts</subject><subject>Plant production</subject><subject>Plant tissues</subject><subject>Reflectance</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>RNA sequencing</subject><subject>RNA-Seq</subject><issn>1880-554X</issn><issn>1883-0986</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNo90E9LwzAUAPAiCg7dwW8Q8OShM2mTJgUvMucmDPWwgbeQpi8zo0tr0g327Y1Wd3qPx4_3L0luCJ5kLGP3oKsJE5OSnCUjIkSe4lIU5785ThmjH5fJOARbYUwLyjguR4l5bV0Nofd73dsDoFno7U71tnWoNWhqvVa1VQ6t7A6QdWih_CFyqNHcAzj0Dt42jUJLULGO1sG6DVocO_ChA9171aAn1avr5MKoJsD4L14l6-fZarpIl2_zl-njMtWUUJIyUXFRcCaoEVQAU1yXhtdME8KrUphMGFFRqnJsdJ5jTQzhWc5NzYWpCsrzq-R26Nv59msfF5Xbdu9dHCmzeHFW4DzLoroblPZtCB6M7Hy82h8lwfLnkzJ-UjIhSxLtw2C3oVcbOEnle6sb-Jd04Key_lRegsu_AQ17fGg</recordid><startdate>20201001</startdate><enddate>20201001</enddate><creator>NAGANO, Shogo</creator><creator>TANIGAKI, Yusuke</creator><creator>FUKUDA, Hirokazu</creator><general>Japanese Society of Agricultural, Biological and Environmental Engineers and Scientists</general><general>Japan Science and Technology Agency</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7QH</scope><scope>7QO</scope><scope>7ST</scope><scope>7UA</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H97</scope><scope>L.G</scope><scope>P64</scope><scope>SOI</scope></search><sort><creationdate>20201001</creationdate><title>Nondestructive Estimation of Circadian Time in Harvested Green Perilla Leaves Using Hyperspectral Data</title><author>NAGANO, Shogo ; TANIGAKI, Yusuke ; FUKUDA, Hirokazu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4141-58b7867584f848e5a7c9f7d5c117b98f28f8b44a30fc330c1f17237fd78fb6473</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Alcohols</topic><topic>artificial neural network</topic><topic>Biological activity</topic><topic>Biological clocks</topic><topic>Circadian rhythm</topic><topic>Circadian rhythms</topic><topic>Gene expression</topic><topic>Gene sequencing</topic><topic>hyperspectral camera</topic><topic>Learning algorithms</topic><topic>Leaves</topic><topic>Machine learning</topic><topic>metabolome analysis</topic><topic>Nondestructive testing</topic><topic>Nucleic acids</topic><topic>Perilla frutescens var. crispa f. viridis</topic><topic>Perillyl alcohol</topic><topic>Plant extracts</topic><topic>Plant production</topic><topic>Plant tissues</topic><topic>Reflectance</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>RNA sequencing</topic><topic>RNA-Seq</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>NAGANO, Shogo</creatorcontrib><creatorcontrib>TANIGAKI, Yusuke</creatorcontrib><creatorcontrib>FUKUDA, Hirokazu</creatorcontrib><collection>CrossRef</collection><collection>Aqualine</collection><collection>Biotechnology Research Abstracts</collection><collection>Environment Abstracts</collection><collection>Water Resources Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 3: Aquatic Pollution & Environmental Quality</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environment Abstracts</collection><jtitle>Environment control in biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>NAGANO, Shogo</au><au>TANIGAKI, Yusuke</au><au>FUKUDA, Hirokazu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Nondestructive Estimation of Circadian Time in Harvested Green Perilla Leaves Using Hyperspectral Data</atitle><jtitle>Environment control in biology</jtitle><addtitle>Environ. Control Biol.</addtitle><date>2020-10-01</date><risdate>2020</risdate><volume>58</volume><issue>4</issue><spage>91</spage><epage>97</epage><pages>91-97</pages><issn>1880-554X</issn><eissn>1883-0986</eissn><abstract>The circadian clock, an internal oscillator with a period of approximately 24 hours, plays an important role in the regulation of biological processes, and an understanding of circadian rhythms can be employed to improve the quality of plant production. Many studies have measured the circadian rhythms of plants and estimate their circadian times. However, the circadian time estimation methods used in previous studies are difficult to apply to commercial crops because they require extraction of plant contents such as RNA, which involves destroying plant tissues. In this study, we sought to develop a nondestructive method for estimating circadian time in harvested leaves of green perilla (Perilla frutescens var. crispa f. viridis). The results of RNA sequencing (RNA-Seq) show that the gene expression of perillyl alcohol depend on the circadian time. A hyperspectral camera captured the light reflectance of 141 wavebands from 350 to 1,050 nm on leaves, and machine learning using the reflectance data successfully estimated the circadian time corresponding to the harvest time. The study results demonstrate the potential for the nondestructive use of hyperspectral reflectance data in circadian time estimation and its applicability to improving the quality of plant production.</abstract><cop>Fukuoka</cop><pub>Japanese Society of Agricultural, Biological and Environmental Engineers and Scientists</pub><doi>10.2525/ecb.58.91</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Alcohols artificial neural network Biological activity Biological clocks Circadian rhythm Circadian rhythms Gene expression Gene sequencing hyperspectral camera Learning algorithms Leaves Machine learning metabolome analysis Nondestructive testing Nucleic acids Perilla frutescens var. crispa f. viridis Perillyl alcohol Plant extracts Plant production Plant tissues Reflectance Ribonucleic acid RNA RNA sequencing RNA-Seq |
title | Nondestructive Estimation of Circadian Time in Harvested Green Perilla Leaves Using Hyperspectral Data |
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