Rapid repeatable phenotypic and genomic adaptation following multiple introductions
Uncovering the genomic basis of repeated adaption can provide important insights into the constraints and biases that limit the diversity of genetic responses. Demographic processes such as admixture or bottlenecks affect genetic variation underlying traits experiencing selection. The impact of thes...
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Veröffentlicht in: | Molecular ecology 2020-11, Vol.29 (21), p.4102-4117 |
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description | Uncovering the genomic basis of repeated adaption can provide important insights into the constraints and biases that limit the diversity of genetic responses. Demographic processes such as admixture or bottlenecks affect genetic variation underlying traits experiencing selection. The impact of these processes on the genetic basis of adaptation remains, however, largely unexamined empirically. We here test repeatability in phenotypes and genotypes along parallel climatic clines within the native North American and introduced European and Australian Ambrosia artemisiifolia ranges. To do this, we combined multiple lines of evidence from phenotype‐environment associations, FST‐like outlier tests, genotype‐environment associations and genotype‐phenotype associations. We used 853 individuals grown in common garden from 84 sampling locations, targeting 19 phenotypes, >83 k SNPs and 22 environmental variables. We found that 17%–26% of loci with adaptive signatures were repeated among ranges, despite alternative demographic histories shaping genetic variation and genetic associations. Our results suggest major adaptive changes can occur on short timescales, with seemingly minimum impacts due to demographic changes linked to introduction. These patterns reveal some predictability of evolutionary change during range expansion, key in a world facing ongoing climate change, and rapid invasive spread. |
doi_str_mv | 10.1111/mec.15429 |
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Demographic processes such as admixture or bottlenecks affect genetic variation underlying traits experiencing selection. The impact of these processes on the genetic basis of adaptation remains, however, largely unexamined empirically. We here test repeatability in phenotypes and genotypes along parallel climatic clines within the native North American and introduced European and Australian Ambrosia artemisiifolia ranges. To do this, we combined multiple lines of evidence from phenotype‐environment associations, FST‐like outlier tests, genotype‐environment associations and genotype‐phenotype associations. We used 853 individuals grown in common garden from 84 sampling locations, targeting 19 phenotypes, >83 k SNPs and 22 environmental variables. We found that 17%–26% of loci with adaptive signatures were repeated among ranges, despite alternative demographic histories shaping genetic variation and genetic associations. Our results suggest major adaptive changes can occur on short timescales, with seemingly minimum impacts due to demographic changes linked to introduction. These patterns reveal some predictability of evolutionary change during range expansion, key in a world facing ongoing climate change, and rapid invasive spread.</description><identifier>ISSN: 0962-1083</identifier><identifier>EISSN: 1365-294X</identifier><identifier>DOI: 10.1111/mec.15429</identifier><identifier>PMID: 32246535</identifier><language>eng</language><publisher>England: Blackwell Publishing Ltd</publisher><subject>Adaptation ; Ambrosia artemisiifolia ; climate adaptation ; Climate change ; Clines ; Demographics ; Genetic diversity ; Genotypes ; genotype‐environment associations ; genotype‐phenotype associations ; multiple introductions ; Phenotypes ; Range extension ; rapid repeated adaptation ; Reproducibility ; Single-nucleotide polymorphism</subject><ispartof>Molecular ecology, 2020-11, Vol.29 (21), p.4102-4117</ispartof><rights>2020 John Wiley & Sons Ltd</rights><rights>2020 John Wiley & Sons Ltd.</rights><rights>Copyright © 2020 John Wiley & Sons Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4199-8ebc6a2e0c69c6d9663ec4fb28b4b7ca21789c339b3ef6f8b71ab72bb351fdd93</citedby><cites>FETCH-LOGICAL-c4199-8ebc6a2e0c69c6d9663ec4fb28b4b7ca21789c339b3ef6f8b71ab72bb351fdd93</cites><orcidid>0000-0001-9199-7704</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fmec.15429$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fmec.15429$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32246535$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Boheemen, Lotte A.</creatorcontrib><creatorcontrib>Hodgins, Kathryn A.</creatorcontrib><title>Rapid repeatable phenotypic and genomic adaptation following multiple introductions</title><title>Molecular ecology</title><addtitle>Mol Ecol</addtitle><description>Uncovering the genomic basis of repeated adaption can provide important insights into the constraints and biases that limit the diversity of genetic responses. Demographic processes such as admixture or bottlenecks affect genetic variation underlying traits experiencing selection. The impact of these processes on the genetic basis of adaptation remains, however, largely unexamined empirically. We here test repeatability in phenotypes and genotypes along parallel climatic clines within the native North American and introduced European and Australian Ambrosia artemisiifolia ranges. To do this, we combined multiple lines of evidence from phenotype‐environment associations, FST‐like outlier tests, genotype‐environment associations and genotype‐phenotype associations. We used 853 individuals grown in common garden from 84 sampling locations, targeting 19 phenotypes, >83 k SNPs and 22 environmental variables. We found that 17%–26% of loci with adaptive signatures were repeated among ranges, despite alternative demographic histories shaping genetic variation and genetic associations. Our results suggest major adaptive changes can occur on short timescales, with seemingly minimum impacts due to demographic changes linked to introduction. These patterns reveal some predictability of evolutionary change during range expansion, key in a world facing ongoing climate change, and rapid invasive spread.</description><subject>Adaptation</subject><subject>Ambrosia artemisiifolia</subject><subject>climate adaptation</subject><subject>Climate change</subject><subject>Clines</subject><subject>Demographics</subject><subject>Genetic diversity</subject><subject>Genotypes</subject><subject>genotype‐environment associations</subject><subject>genotype‐phenotype associations</subject><subject>multiple introductions</subject><subject>Phenotypes</subject><subject>Range extension</subject><subject>rapid repeated adaptation</subject><subject>Reproducibility</subject><subject>Single-nucleotide polymorphism</subject><issn>0962-1083</issn><issn>1365-294X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp1kMtKAzEUhoMotlYXvoAMuHIx7eQ6k6WUeoGK4AXchdympswlZmYofXtTW92ZzcnhfOc78ANwCbMpjG9WWz2FlCB-BMYQM5oiTj6OwTjjDKUwK_AInHXdOssgRpSeghFGiDCK6Ri8vkjvTBKst7KXqrKJ_7RN22-904lsTLKKXb37G-l72bu2Scq2qtqNa1ZJPVS983HJNX1ozaB38-4cnJSy6uzFoU7A-93ibf6QLp_vH-e3y1QTyHlaWKWZRDbTjGtmOGPYalIqVCiici0RzAuuMeYK25KVhcqhVDlSClNYGsPxBFzvvT60X4PterFuh9DEkwIRSghkGOeRutlTOrRdF2wpfHC1DFsBM7GLT8T4xE98kb06GAdVW_NH_uYVgdke2LjKbv83iafFfK_8BrEheys</recordid><startdate>202011</startdate><enddate>202011</enddate><creator>Boheemen, Lotte A.</creator><creator>Hodgins, Kathryn A.</creator><general>Blackwell Publishing Ltd</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7SS</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0001-9199-7704</orcidid></search><sort><creationdate>202011</creationdate><title>Rapid repeatable phenotypic and genomic adaptation following multiple introductions</title><author>Boheemen, Lotte A. ; Hodgins, Kathryn A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4199-8ebc6a2e0c69c6d9663ec4fb28b4b7ca21789c339b3ef6f8b71ab72bb351fdd93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Adaptation</topic><topic>Ambrosia artemisiifolia</topic><topic>climate adaptation</topic><topic>Climate change</topic><topic>Clines</topic><topic>Demographics</topic><topic>Genetic diversity</topic><topic>Genotypes</topic><topic>genotype‐environment associations</topic><topic>genotype‐phenotype associations</topic><topic>multiple introductions</topic><topic>Phenotypes</topic><topic>Range extension</topic><topic>rapid repeated adaptation</topic><topic>Reproducibility</topic><topic>Single-nucleotide polymorphism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Boheemen, Lotte A.</creatorcontrib><creatorcontrib>Hodgins, Kathryn A.</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Molecular ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Boheemen, Lotte A.</au><au>Hodgins, Kathryn A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Rapid repeatable phenotypic and genomic adaptation following multiple introductions</atitle><jtitle>Molecular ecology</jtitle><addtitle>Mol Ecol</addtitle><date>2020-11</date><risdate>2020</risdate><volume>29</volume><issue>21</issue><spage>4102</spage><epage>4117</epage><pages>4102-4117</pages><issn>0962-1083</issn><eissn>1365-294X</eissn><abstract>Uncovering the genomic basis of repeated adaption can provide important insights into the constraints and biases that limit the diversity of genetic responses. Demographic processes such as admixture or bottlenecks affect genetic variation underlying traits experiencing selection. The impact of these processes on the genetic basis of adaptation remains, however, largely unexamined empirically. We here test repeatability in phenotypes and genotypes along parallel climatic clines within the native North American and introduced European and Australian Ambrosia artemisiifolia ranges. To do this, we combined multiple lines of evidence from phenotype‐environment associations, FST‐like outlier tests, genotype‐environment associations and genotype‐phenotype associations. We used 853 individuals grown in common garden from 84 sampling locations, targeting 19 phenotypes, >83 k SNPs and 22 environmental variables. We found that 17%–26% of loci with adaptive signatures were repeated among ranges, despite alternative demographic histories shaping genetic variation and genetic associations. Our results suggest major adaptive changes can occur on short timescales, with seemingly minimum impacts due to demographic changes linked to introduction. These patterns reveal some predictability of evolutionary change during range expansion, key in a world facing ongoing climate change, and rapid invasive spread.</abstract><cop>England</cop><pub>Blackwell Publishing Ltd</pub><pmid>32246535</pmid><doi>10.1111/mec.15429</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0001-9199-7704</orcidid></addata></record> |
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subjects | Adaptation Ambrosia artemisiifolia climate adaptation Climate change Clines Demographics Genetic diversity Genotypes genotype‐environment associations genotype‐phenotype associations multiple introductions Phenotypes Range extension rapid repeated adaptation Reproducibility Single-nucleotide polymorphism |
title | Rapid repeatable phenotypic and genomic adaptation following multiple introductions |
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