Increasing protein stability by engineering the n → π interaction at the β-turn
Abundant n → π* interactions between adjacent backbone carbonyl groups, identified by statistical analysis of protein structures, are predicted to play an important role in dictating the structure of proteins. However, experimentally testing the prediction in proteins has been challenging due to the...
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Veröffentlicht in: | Chemical science (Cambridge) 2020-09, Vol.11 (35), p.948-9487 |
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creator | Khatri, Bhavesh Majumder, Puja Nagesh, Jayashree Penmatsa, Aravind Chatterjee, Jayanta |
description | Abundant n → π* interactions between adjacent backbone carbonyl groups, identified by statistical analysis of protein structures, are predicted to play an important role in dictating the structure of proteins. However, experimentally testing the prediction in proteins has been challenging due to the weak nature of this interaction. By amplifying the strength of the n → π* interaction
via
amino acid substitution and thioamide incorporation at a solvent exposed β-turn within the
GB1
proteins and Pin 1 WW domain, we demonstrate that an n → π* interaction increases the structural stability of proteins by restricting the
torsion angle. Our results also suggest that amino acid side-chain identity and its rotameric conformation play an important and decisive role in dictating the strength of an n → π* interaction.
Amino acid residues adopt a right-handed α-helical conformation with increasing strength of the n → π* interaction. We also demonstrate a direct consequence of n → π* interactions on enhancing the structural stability of proteins. |
doi_str_mv | 10.1039/d0sc03060k |
format | Article |
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via
amino acid substitution and thioamide incorporation at a solvent exposed β-turn within the
GB1
proteins and Pin 1 WW domain, we demonstrate that an n → π* interaction increases the structural stability of proteins by restricting the
torsion angle. Our results also suggest that amino acid side-chain identity and its rotameric conformation play an important and decisive role in dictating the strength of an n → π* interaction.
Amino acid residues adopt a right-handed α-helical conformation with increasing strength of the n → π* interaction. We also demonstrate a direct consequence of n → π* interactions on enhancing the structural stability of proteins.</description><identifier>ISSN: 2041-6520</identifier><identifier>EISSN: 2041-6539</identifier><identifier>DOI: 10.1039/d0sc03060k</identifier><identifier>PMID: 34094214</identifier><language>eng</language><publisher>Cambridge: Royal Society of Chemistry</publisher><subject>Carbonyl groups ; Carbonyls ; Chemistry ; Crystal structure ; Crystallography ; Molecular conformation ; Proteins ; Statistical analysis ; Structural stability</subject><ispartof>Chemical science (Cambridge), 2020-09, Vol.11 (35), p.948-9487</ispartof><rights>Copyright Royal Society of Chemistry 2020</rights><rights>This journal is © The Royal Society of Chemistry 2020 The Royal Society of Chemistry</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c431t-e5283e4f8a7ca591c342b5ca53d5cf352e47dbec05889aaa92f21216c22817293</citedby><cites>FETCH-LOGICAL-c431t-e5283e4f8a7ca591c342b5ca53d5cf352e47dbec05889aaa92f21216c22817293</cites><orcidid>0000-0002-3603-7839 ; 0000-0002-4124-7339 ; 0000-0002-0415-8329 ; 0000-0001-9519-5055 ; 0000-0002-5421-6814</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8161691/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8161691/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,53791,53793</link.rule.ids></links><search><creatorcontrib>Khatri, Bhavesh</creatorcontrib><creatorcontrib>Majumder, Puja</creatorcontrib><creatorcontrib>Nagesh, Jayashree</creatorcontrib><creatorcontrib>Penmatsa, Aravind</creatorcontrib><creatorcontrib>Chatterjee, Jayanta</creatorcontrib><title>Increasing protein stability by engineering the n → π interaction at the β-turn</title><title>Chemical science (Cambridge)</title><description>Abundant n → π* interactions between adjacent backbone carbonyl groups, identified by statistical analysis of protein structures, are predicted to play an important role in dictating the structure of proteins. However, experimentally testing the prediction in proteins has been challenging due to the weak nature of this interaction. By amplifying the strength of the n → π* interaction
via
amino acid substitution and thioamide incorporation at a solvent exposed β-turn within the
GB1
proteins and Pin 1 WW domain, we demonstrate that an n → π* interaction increases the structural stability of proteins by restricting the
torsion angle. Our results also suggest that amino acid side-chain identity and its rotameric conformation play an important and decisive role in dictating the strength of an n → π* interaction.
Amino acid residues adopt a right-handed α-helical conformation with increasing strength of the n → π* interaction. We also demonstrate a direct consequence of n → π* interactions on enhancing the structural stability of proteins.</description><subject>Carbonyl groups</subject><subject>Carbonyls</subject><subject>Chemistry</subject><subject>Crystal structure</subject><subject>Crystallography</subject><subject>Molecular conformation</subject><subject>Proteins</subject><subject>Statistical analysis</subject><subject>Structural stability</subject><issn>2041-6520</issn><issn>2041-6539</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp9kc1KHEEUhYtgiDKZTfaBCm6C0LF-e7o2goy_ZMCFybqorr49lvZUj1U1gdm58gF8FB9E38EnsXRkJFnkbu6F83G4h4PQF0p-UMLVbkOiJZyU5OoD2mJE0KKUXG2sb0Y20TDGS5KHcyrZ6BPa5IIowajYQuen3gYw0fkpnoc-gfM4JlO7zqUlrpcY_NR5gPACpAvAHj_d3uHHG-x8gmBscr3HJr1qD_dFWgT_GX1sTRdh-LYH6PfR4a_xSTE5Oz4d708KKzhNBUhWcRBtZUbWSEUtF6yW-eSNtC2XDMSoqcESWVXKGKNYyyijpWWsoiOm-ADtrXzni3oGjQWfgun0PLiZCUvdG6f_Vry70NP-j65oSUtFs8H3N4PQXy8gJj1z0ULXGQ_9ImomeUWEIoxkdPsf9LLPUXM8zYTIQSolZKZ2VpQNfYwB2vUzlOiXuvQBOR-_1vUzw99WcIh2zb3XqedNm5mv_2P4M26lnRs</recordid><startdate>20200921</startdate><enddate>20200921</enddate><creator>Khatri, Bhavesh</creator><creator>Majumder, Puja</creator><creator>Nagesh, Jayashree</creator><creator>Penmatsa, Aravind</creator><creator>Chatterjee, Jayanta</creator><general>Royal Society of Chemistry</general><general>The Royal Society of Chemistry</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7SR</scope><scope>8BQ</scope><scope>8FD</scope><scope>JG9</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-3603-7839</orcidid><orcidid>https://orcid.org/0000-0002-4124-7339</orcidid><orcidid>https://orcid.org/0000-0002-0415-8329</orcidid><orcidid>https://orcid.org/0000-0001-9519-5055</orcidid><orcidid>https://orcid.org/0000-0002-5421-6814</orcidid></search><sort><creationdate>20200921</creationdate><title>Increasing protein stability by engineering the n → π interaction at the β-turn</title><author>Khatri, Bhavesh ; Majumder, Puja ; Nagesh, Jayashree ; Penmatsa, Aravind ; Chatterjee, Jayanta</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c431t-e5283e4f8a7ca591c342b5ca53d5cf352e47dbec05889aaa92f21216c22817293</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Carbonyl groups</topic><topic>Carbonyls</topic><topic>Chemistry</topic><topic>Crystal structure</topic><topic>Crystallography</topic><topic>Molecular conformation</topic><topic>Proteins</topic><topic>Statistical analysis</topic><topic>Structural stability</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Khatri, Bhavesh</creatorcontrib><creatorcontrib>Majumder, Puja</creatorcontrib><creatorcontrib>Nagesh, Jayashree</creatorcontrib><creatorcontrib>Penmatsa, Aravind</creatorcontrib><creatorcontrib>Chatterjee, Jayanta</creatorcontrib><collection>CrossRef</collection><collection>Engineered Materials Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Materials Research Database</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Chemical science (Cambridge)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Khatri, Bhavesh</au><au>Majumder, Puja</au><au>Nagesh, Jayashree</au><au>Penmatsa, Aravind</au><au>Chatterjee, Jayanta</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Increasing protein stability by engineering the n → π interaction at the β-turn</atitle><jtitle>Chemical science (Cambridge)</jtitle><date>2020-09-21</date><risdate>2020</risdate><volume>11</volume><issue>35</issue><spage>948</spage><epage>9487</epage><pages>948-9487</pages><issn>2041-6520</issn><eissn>2041-6539</eissn><abstract>Abundant n → π* interactions between adjacent backbone carbonyl groups, identified by statistical analysis of protein structures, are predicted to play an important role in dictating the structure of proteins. However, experimentally testing the prediction in proteins has been challenging due to the weak nature of this interaction. By amplifying the strength of the n → π* interaction
via
amino acid substitution and thioamide incorporation at a solvent exposed β-turn within the
GB1
proteins and Pin 1 WW domain, we demonstrate that an n → π* interaction increases the structural stability of proteins by restricting the
torsion angle. Our results also suggest that amino acid side-chain identity and its rotameric conformation play an important and decisive role in dictating the strength of an n → π* interaction.
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subjects | Carbonyl groups Carbonyls Chemistry Crystal structure Crystallography Molecular conformation Proteins Statistical analysis Structural stability |
title | Increasing protein stability by engineering the n → π interaction at the β-turn |
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