Increasing protein stability by engineering the n → π interaction at the β-turn

Abundant n → π* interactions between adjacent backbone carbonyl groups, identified by statistical analysis of protein structures, are predicted to play an important role in dictating the structure of proteins. However, experimentally testing the prediction in proteins has been challenging due to the...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Chemical science (Cambridge) 2020-09, Vol.11 (35), p.948-9487
Hauptverfasser: Khatri, Bhavesh, Majumder, Puja, Nagesh, Jayashree, Penmatsa, Aravind, Chatterjee, Jayanta
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 9487
container_issue 35
container_start_page 948
container_title Chemical science (Cambridge)
container_volume 11
creator Khatri, Bhavesh
Majumder, Puja
Nagesh, Jayashree
Penmatsa, Aravind
Chatterjee, Jayanta
description Abundant n → π* interactions between adjacent backbone carbonyl groups, identified by statistical analysis of protein structures, are predicted to play an important role in dictating the structure of proteins. However, experimentally testing the prediction in proteins has been challenging due to the weak nature of this interaction. By amplifying the strength of the n → π* interaction via amino acid substitution and thioamide incorporation at a solvent exposed β-turn within the GB1 proteins and Pin 1 WW domain, we demonstrate that an n → π* interaction increases the structural stability of proteins by restricting the torsion angle. Our results also suggest that amino acid side-chain identity and its rotameric conformation play an important and decisive role in dictating the strength of an n → π* interaction. Amino acid residues adopt a right-handed α-helical conformation with increasing strength of the n → π* interaction. We also demonstrate a direct consequence of n → π* interactions on enhancing the structural stability of proteins.
doi_str_mv 10.1039/d0sc03060k
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_proquest_journals_2442838945</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2538049020</sourcerecordid><originalsourceid>FETCH-LOGICAL-c431t-e5283e4f8a7ca591c342b5ca53d5cf352e47dbec05889aaa92f21216c22817293</originalsourceid><addsrcrecordid>eNp9kc1KHEEUhYtgiDKZTfaBCm6C0LF-e7o2goy_ZMCFybqorr49lvZUj1U1gdm58gF8FB9E38EnsXRkJFnkbu6F83G4h4PQF0p-UMLVbkOiJZyU5OoD2mJE0KKUXG2sb0Y20TDGS5KHcyrZ6BPa5IIowajYQuen3gYw0fkpnoc-gfM4JlO7zqUlrpcY_NR5gPACpAvAHj_d3uHHG-x8gmBscr3HJr1qD_dFWgT_GX1sTRdh-LYH6PfR4a_xSTE5Oz4d708KKzhNBUhWcRBtZUbWSEUtF6yW-eSNtC2XDMSoqcESWVXKGKNYyyijpWWsoiOm-ADtrXzni3oGjQWfgun0PLiZCUvdG6f_Vry70NP-j65oSUtFs8H3N4PQXy8gJj1z0ULXGQ_9ImomeUWEIoxkdPsf9LLPUXM8zYTIQSolZKZ2VpQNfYwB2vUzlOiXuvQBOR-_1vUzw99WcIh2zb3XqedNm5mv_2P4M26lnRs</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2442838945</pqid></control><display><type>article</type><title>Increasing protein stability by engineering the n → π interaction at the β-turn</title><source>PubMed Central Free</source><source>DOAJ Directory of Open Access Journals</source><source>PubMed Central Open Access</source><source>EZB-FREE-00999 freely available EZB journals</source><creator>Khatri, Bhavesh ; Majumder, Puja ; Nagesh, Jayashree ; Penmatsa, Aravind ; Chatterjee, Jayanta</creator><creatorcontrib>Khatri, Bhavesh ; Majumder, Puja ; Nagesh, Jayashree ; Penmatsa, Aravind ; Chatterjee, Jayanta</creatorcontrib><description>Abundant n → π* interactions between adjacent backbone carbonyl groups, identified by statistical analysis of protein structures, are predicted to play an important role in dictating the structure of proteins. However, experimentally testing the prediction in proteins has been challenging due to the weak nature of this interaction. By amplifying the strength of the n → π* interaction via amino acid substitution and thioamide incorporation at a solvent exposed β-turn within the GB1 proteins and Pin 1 WW domain, we demonstrate that an n → π* interaction increases the structural stability of proteins by restricting the torsion angle. Our results also suggest that amino acid side-chain identity and its rotameric conformation play an important and decisive role in dictating the strength of an n → π* interaction. Amino acid residues adopt a right-handed α-helical conformation with increasing strength of the n → π* interaction. We also demonstrate a direct consequence of n → π* interactions on enhancing the structural stability of proteins.</description><identifier>ISSN: 2041-6520</identifier><identifier>EISSN: 2041-6539</identifier><identifier>DOI: 10.1039/d0sc03060k</identifier><identifier>PMID: 34094214</identifier><language>eng</language><publisher>Cambridge: Royal Society of Chemistry</publisher><subject>Carbonyl groups ; Carbonyls ; Chemistry ; Crystal structure ; Crystallography ; Molecular conformation ; Proteins ; Statistical analysis ; Structural stability</subject><ispartof>Chemical science (Cambridge), 2020-09, Vol.11 (35), p.948-9487</ispartof><rights>Copyright Royal Society of Chemistry 2020</rights><rights>This journal is © The Royal Society of Chemistry 2020 The Royal Society of Chemistry</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c431t-e5283e4f8a7ca591c342b5ca53d5cf352e47dbec05889aaa92f21216c22817293</citedby><cites>FETCH-LOGICAL-c431t-e5283e4f8a7ca591c342b5ca53d5cf352e47dbec05889aaa92f21216c22817293</cites><orcidid>0000-0002-3603-7839 ; 0000-0002-4124-7339 ; 0000-0002-0415-8329 ; 0000-0001-9519-5055 ; 0000-0002-5421-6814</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8161691/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8161691/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,53791,53793</link.rule.ids></links><search><creatorcontrib>Khatri, Bhavesh</creatorcontrib><creatorcontrib>Majumder, Puja</creatorcontrib><creatorcontrib>Nagesh, Jayashree</creatorcontrib><creatorcontrib>Penmatsa, Aravind</creatorcontrib><creatorcontrib>Chatterjee, Jayanta</creatorcontrib><title>Increasing protein stability by engineering the n → π interaction at the β-turn</title><title>Chemical science (Cambridge)</title><description>Abundant n → π* interactions between adjacent backbone carbonyl groups, identified by statistical analysis of protein structures, are predicted to play an important role in dictating the structure of proteins. However, experimentally testing the prediction in proteins has been challenging due to the weak nature of this interaction. By amplifying the strength of the n → π* interaction via amino acid substitution and thioamide incorporation at a solvent exposed β-turn within the GB1 proteins and Pin 1 WW domain, we demonstrate that an n → π* interaction increases the structural stability of proteins by restricting the torsion angle. Our results also suggest that amino acid side-chain identity and its rotameric conformation play an important and decisive role in dictating the strength of an n → π* interaction. Amino acid residues adopt a right-handed α-helical conformation with increasing strength of the n → π* interaction. We also demonstrate a direct consequence of n → π* interactions on enhancing the structural stability of proteins.</description><subject>Carbonyl groups</subject><subject>Carbonyls</subject><subject>Chemistry</subject><subject>Crystal structure</subject><subject>Crystallography</subject><subject>Molecular conformation</subject><subject>Proteins</subject><subject>Statistical analysis</subject><subject>Structural stability</subject><issn>2041-6520</issn><issn>2041-6539</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp9kc1KHEEUhYtgiDKZTfaBCm6C0LF-e7o2goy_ZMCFybqorr49lvZUj1U1gdm58gF8FB9E38EnsXRkJFnkbu6F83G4h4PQF0p-UMLVbkOiJZyU5OoD2mJE0KKUXG2sb0Y20TDGS5KHcyrZ6BPa5IIowajYQuen3gYw0fkpnoc-gfM4JlO7zqUlrpcY_NR5gPACpAvAHj_d3uHHG-x8gmBscr3HJr1qD_dFWgT_GX1sTRdh-LYH6PfR4a_xSTE5Oz4d708KKzhNBUhWcRBtZUbWSEUtF6yW-eSNtC2XDMSoqcESWVXKGKNYyyijpWWsoiOm-ADtrXzni3oGjQWfgun0PLiZCUvdG6f_Vry70NP-j65oSUtFs8H3N4PQXy8gJj1z0ULXGQ_9ImomeUWEIoxkdPsf9LLPUXM8zYTIQSolZKZ2VpQNfYwB2vUzlOiXuvQBOR-_1vUzw99WcIh2zb3XqedNm5mv_2P4M26lnRs</recordid><startdate>20200921</startdate><enddate>20200921</enddate><creator>Khatri, Bhavesh</creator><creator>Majumder, Puja</creator><creator>Nagesh, Jayashree</creator><creator>Penmatsa, Aravind</creator><creator>Chatterjee, Jayanta</creator><general>Royal Society of Chemistry</general><general>The Royal Society of Chemistry</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7SR</scope><scope>8BQ</scope><scope>8FD</scope><scope>JG9</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-3603-7839</orcidid><orcidid>https://orcid.org/0000-0002-4124-7339</orcidid><orcidid>https://orcid.org/0000-0002-0415-8329</orcidid><orcidid>https://orcid.org/0000-0001-9519-5055</orcidid><orcidid>https://orcid.org/0000-0002-5421-6814</orcidid></search><sort><creationdate>20200921</creationdate><title>Increasing protein stability by engineering the n → π interaction at the β-turn</title><author>Khatri, Bhavesh ; Majumder, Puja ; Nagesh, Jayashree ; Penmatsa, Aravind ; Chatterjee, Jayanta</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c431t-e5283e4f8a7ca591c342b5ca53d5cf352e47dbec05889aaa92f21216c22817293</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Carbonyl groups</topic><topic>Carbonyls</topic><topic>Chemistry</topic><topic>Crystal structure</topic><topic>Crystallography</topic><topic>Molecular conformation</topic><topic>Proteins</topic><topic>Statistical analysis</topic><topic>Structural stability</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Khatri, Bhavesh</creatorcontrib><creatorcontrib>Majumder, Puja</creatorcontrib><creatorcontrib>Nagesh, Jayashree</creatorcontrib><creatorcontrib>Penmatsa, Aravind</creatorcontrib><creatorcontrib>Chatterjee, Jayanta</creatorcontrib><collection>CrossRef</collection><collection>Engineered Materials Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Materials Research Database</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Chemical science (Cambridge)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Khatri, Bhavesh</au><au>Majumder, Puja</au><au>Nagesh, Jayashree</au><au>Penmatsa, Aravind</au><au>Chatterjee, Jayanta</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Increasing protein stability by engineering the n → π interaction at the β-turn</atitle><jtitle>Chemical science (Cambridge)</jtitle><date>2020-09-21</date><risdate>2020</risdate><volume>11</volume><issue>35</issue><spage>948</spage><epage>9487</epage><pages>948-9487</pages><issn>2041-6520</issn><eissn>2041-6539</eissn><abstract>Abundant n → π* interactions between adjacent backbone carbonyl groups, identified by statistical analysis of protein structures, are predicted to play an important role in dictating the structure of proteins. However, experimentally testing the prediction in proteins has been challenging due to the weak nature of this interaction. By amplifying the strength of the n → π* interaction via amino acid substitution and thioamide incorporation at a solvent exposed β-turn within the GB1 proteins and Pin 1 WW domain, we demonstrate that an n → π* interaction increases the structural stability of proteins by restricting the torsion angle. Our results also suggest that amino acid side-chain identity and its rotameric conformation play an important and decisive role in dictating the strength of an n → π* interaction. Amino acid residues adopt a right-handed α-helical conformation with increasing strength of the n → π* interaction. We also demonstrate a direct consequence of n → π* interactions on enhancing the structural stability of proteins.</abstract><cop>Cambridge</cop><pub>Royal Society of Chemistry</pub><pmid>34094214</pmid><doi>10.1039/d0sc03060k</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-3603-7839</orcidid><orcidid>https://orcid.org/0000-0002-4124-7339</orcidid><orcidid>https://orcid.org/0000-0002-0415-8329</orcidid><orcidid>https://orcid.org/0000-0001-9519-5055</orcidid><orcidid>https://orcid.org/0000-0002-5421-6814</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2041-6520
ispartof Chemical science (Cambridge), 2020-09, Vol.11 (35), p.948-9487
issn 2041-6520
2041-6539
language eng
recordid cdi_proquest_journals_2442838945
source PubMed Central Free; DOAJ Directory of Open Access Journals; PubMed Central Open Access; EZB-FREE-00999 freely available EZB journals
subjects Carbonyl groups
Carbonyls
Chemistry
Crystal structure
Crystallography
Molecular conformation
Proteins
Statistical analysis
Structural stability
title Increasing protein stability by engineering the n → π interaction at the β-turn
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-20T09%3A13%3A05IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Increasing%20protein%20stability%20by%20engineering%20the%20n%20%E2%86%92%20%CF%80%20interaction%20at%20the%20%CE%B2-turn&rft.jtitle=Chemical%20science%20(Cambridge)&rft.au=Khatri,%20Bhavesh&rft.date=2020-09-21&rft.volume=11&rft.issue=35&rft.spage=948&rft.epage=9487&rft.pages=948-9487&rft.issn=2041-6520&rft.eissn=2041-6539&rft_id=info:doi/10.1039/d0sc03060k&rft_dat=%3Cproquest_pubme%3E2538049020%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2442838945&rft_id=info:pmid/34094214&rfr_iscdi=true