The complete mitochondrial genome of Kele pig (Sus scrofa) using next-generation deep sequencing
Kele pig ( Sus scrofa ), a semi-captive native breed in the Southwest of China, have a range of light to dark brown shades phenotype, just like the coat color of Duroc in some way, and also are well known for their good meat quality. However, Kele pigs decreased dramatically in recent years. The fir...
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| Veröffentlicht in: | Conservation genetics resources 2018-06, Vol.10 (2), p.195-199 |
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| creator | Tan, Ya Shi, Kai-zhi Wang, Jing Du, Chun-lin Zhao, Chun-ping Zhang, Xiong Zhu, Li Shang, Yi-shun |
| description | Kele pig (
Sus scrofa
), a semi-captive native breed in the Southwest of China, have a range of light to dark brown shades phenotype, just like the coat color of Duroc in some way, and also are well known for their good meat quality. However, Kele pigs decreased dramatically in recent years. The first complete mitochondrial genome of Kele pig was sequenced by next-generation sequencing in order to develop the mitogenome data for genus
S. scrofa
. The total length of the mitogenome is 16,828 bp, which contains 1 control region, 2 ribosomal RNA genes, 13 protein-coding genes and 22 transfer RNA genes. Phylogenetic analyses based on the complete sequences from several breeds were analyzed by neighbor-joining methods and showed that Kele pigs have closer relationships with domestic pigs in southwest region of China. These results are useful for pig phylogenetic study and evolution study of pig genomes. |
| doi_str_mv | 10.1007/s12686-017-0797-y |
| format | Article |
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Sus scrofa
), a semi-captive native breed in the Southwest of China, have a range of light to dark brown shades phenotype, just like the coat color of Duroc in some way, and also are well known for their good meat quality. However, Kele pigs decreased dramatically in recent years. The first complete mitochondrial genome of Kele pig was sequenced by next-generation sequencing in order to develop the mitogenome data for genus
S. scrofa
. The total length of the mitogenome is 16,828 bp, which contains 1 control region, 2 ribosomal RNA genes, 13 protein-coding genes and 22 transfer RNA genes. Phylogenetic analyses based on the complete sequences from several breeds were analyzed by neighbor-joining methods and showed that Kele pigs have closer relationships with domestic pigs in southwest region of China. These results are useful for pig phylogenetic study and evolution study of pig genomes.</description><identifier>ISSN: 1877-7252</identifier><identifier>EISSN: 1877-7260</identifier><identifier>DOI: 10.1007/s12686-017-0797-y</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Animal Genetics and Genomics ; Biodiversity ; Biomedical and Life Sciences ; Conservation Biology/Ecology ; Ecology ; Evolutionary Biology ; Genomes ; Hogs ; Life Sciences ; Meat ; Mitochondria ; Next-generation sequencing ; Phenotypes ; Phylogenetics ; Phylogeny ; Plant Genetics and Genomics ; rRNA ; Sus scrofa ; Technical Note ; Transfer RNA</subject><ispartof>Conservation genetics resources, 2018-06, Vol.10 (2), p.195-199</ispartof><rights>Springer Science+Business Media B.V. 2017</rights><rights>Springer Science+Business Media B.V. 2017.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c316t-33645ce139b60b1d474e55d9dcf71ccb198d110454e2092e4683051d32312eaa3</citedby><cites>FETCH-LOGICAL-c316t-33645ce139b60b1d474e55d9dcf71ccb198d110454e2092e4683051d32312eaa3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s12686-017-0797-y$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s12686-017-0797-y$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27903,27904,41467,42536,51297</link.rule.ids></links><search><creatorcontrib>Tan, Ya</creatorcontrib><creatorcontrib>Shi, Kai-zhi</creatorcontrib><creatorcontrib>Wang, Jing</creatorcontrib><creatorcontrib>Du, Chun-lin</creatorcontrib><creatorcontrib>Zhao, Chun-ping</creatorcontrib><creatorcontrib>Zhang, Xiong</creatorcontrib><creatorcontrib>Zhu, Li</creatorcontrib><creatorcontrib>Shang, Yi-shun</creatorcontrib><title>The complete mitochondrial genome of Kele pig (Sus scrofa) using next-generation deep sequencing</title><title>Conservation genetics resources</title><addtitle>Conservation Genet Resour</addtitle><description>Kele pig (
Sus scrofa
), a semi-captive native breed in the Southwest of China, have a range of light to dark brown shades phenotype, just like the coat color of Duroc in some way, and also are well known for their good meat quality. However, Kele pigs decreased dramatically in recent years. The first complete mitochondrial genome of Kele pig was sequenced by next-generation sequencing in order to develop the mitogenome data for genus
S. scrofa
. The total length of the mitogenome is 16,828 bp, which contains 1 control region, 2 ribosomal RNA genes, 13 protein-coding genes and 22 transfer RNA genes. Phylogenetic analyses based on the complete sequences from several breeds were analyzed by neighbor-joining methods and showed that Kele pigs have closer relationships with domestic pigs in southwest region of China. These results are useful for pig phylogenetic study and evolution study of pig genomes.</description><subject>Animal Genetics and Genomics</subject><subject>Biodiversity</subject><subject>Biomedical and Life Sciences</subject><subject>Conservation Biology/Ecology</subject><subject>Ecology</subject><subject>Evolutionary Biology</subject><subject>Genomes</subject><subject>Hogs</subject><subject>Life Sciences</subject><subject>Meat</subject><subject>Mitochondria</subject><subject>Next-generation sequencing</subject><subject>Phenotypes</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant Genetics and Genomics</subject><subject>rRNA</subject><subject>Sus scrofa</subject><subject>Technical Note</subject><subject>Transfer RNA</subject><issn>1877-7252</issn><issn>1877-7260</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp1kMtOwzAQRS0EEqXwAewssYGFwa_YyRIhXqISC8rapM4kTZXYwU4l-ve4CoIVqxlp7r0zcxA6Z_SaUapvIuMqV4QyTaguNNkdoBnLtSaaK3r422f8GJ3EuKFU5YLzGfpYrgFb3w8djID7dvR27V0V2rLDDTjfA_Y1foEO8NA2-PJtG3G0wdflFd7G1jXYwddIkhRCObbe4QpgwBE-t-Bsmp-io7rsIpz91Dl6f7hf3j2Rxevj893tgljB1EiEUDKzwESxUnTFKqklZFlVVLbWzNoVK_KKMSozCZwWHGS6n2asElwwDmUp5uhiyh2CT7vjaDZ-G1xaabikqtA8l1lSsUmVXogxQG2G0PZl2BlGzR6kmUCaBNLsQZpd8vDJE5PWNRD-kv83fQMoRnYt</recordid><startdate>20180601</startdate><enddate>20180601</enddate><creator>Tan, Ya</creator><creator>Shi, Kai-zhi</creator><creator>Wang, Jing</creator><creator>Du, Chun-lin</creator><creator>Zhao, Chun-ping</creator><creator>Zhang, Xiong</creator><creator>Zhu, Li</creator><creator>Shang, Yi-shun</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>8FE</scope><scope>8FH</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope></search><sort><creationdate>20180601</creationdate><title>The complete mitochondrial genome of Kele pig (Sus scrofa) using next-generation deep sequencing</title><author>Tan, Ya ; Shi, Kai-zhi ; Wang, Jing ; Du, Chun-lin ; Zhao, Chun-ping ; Zhang, Xiong ; Zhu, Li ; Shang, Yi-shun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c316t-33645ce139b60b1d474e55d9dcf71ccb198d110454e2092e4683051d32312eaa3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Animal Genetics and Genomics</topic><topic>Biodiversity</topic><topic>Biomedical and Life Sciences</topic><topic>Conservation Biology/Ecology</topic><topic>Ecology</topic><topic>Evolutionary Biology</topic><topic>Genomes</topic><topic>Hogs</topic><topic>Life Sciences</topic><topic>Meat</topic><topic>Mitochondria</topic><topic>Next-generation sequencing</topic><topic>Phenotypes</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant Genetics and Genomics</topic><topic>rRNA</topic><topic>Sus scrofa</topic><topic>Technical Note</topic><topic>Transfer RNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tan, Ya</creatorcontrib><creatorcontrib>Shi, Kai-zhi</creatorcontrib><creatorcontrib>Wang, Jing</creatorcontrib><creatorcontrib>Du, Chun-lin</creatorcontrib><creatorcontrib>Zhao, Chun-ping</creatorcontrib><creatorcontrib>Zhang, Xiong</creatorcontrib><creatorcontrib>Zhu, Li</creatorcontrib><creatorcontrib>Shang, Yi-shun</creatorcontrib><collection>CrossRef</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><jtitle>Conservation genetics resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tan, Ya</au><au>Shi, Kai-zhi</au><au>Wang, Jing</au><au>Du, Chun-lin</au><au>Zhao, Chun-ping</au><au>Zhang, Xiong</au><au>Zhu, Li</au><au>Shang, Yi-shun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete mitochondrial genome of Kele pig (Sus scrofa) using next-generation deep sequencing</atitle><jtitle>Conservation genetics resources</jtitle><stitle>Conservation Genet Resour</stitle><date>2018-06-01</date><risdate>2018</risdate><volume>10</volume><issue>2</issue><spage>195</spage><epage>199</epage><pages>195-199</pages><issn>1877-7252</issn><eissn>1877-7260</eissn><abstract>Kele pig (
Sus scrofa
), a semi-captive native breed in the Southwest of China, have a range of light to dark brown shades phenotype, just like the coat color of Duroc in some way, and also are well known for their good meat quality. However, Kele pigs decreased dramatically in recent years. The first complete mitochondrial genome of Kele pig was sequenced by next-generation sequencing in order to develop the mitogenome data for genus
S. scrofa
. The total length of the mitogenome is 16,828 bp, which contains 1 control region, 2 ribosomal RNA genes, 13 protein-coding genes and 22 transfer RNA genes. Phylogenetic analyses based on the complete sequences from several breeds were analyzed by neighbor-joining methods and showed that Kele pigs have closer relationships with domestic pigs in southwest region of China. These results are useful for pig phylogenetic study and evolution study of pig genomes.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s12686-017-0797-y</doi><tpages>5</tpages></addata></record> |
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| language | eng |
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| source | Springer Nature - Complete Springer Journals |
| subjects | Animal Genetics and Genomics Biodiversity Biomedical and Life Sciences Conservation Biology/Ecology Ecology Evolutionary Biology Genomes Hogs Life Sciences Meat Mitochondria Next-generation sequencing Phenotypes Phylogenetics Phylogeny Plant Genetics and Genomics rRNA Sus scrofa Technical Note Transfer RNA |
| title | The complete mitochondrial genome of Kele pig (Sus scrofa) using next-generation deep sequencing |
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