The complete chloroplast genome sequence of an economically important plant, Zanthoxylum bungeanum (Rutaceae)
The complete chloroplast genome (cp genome) sequence of Zanthoxylum bungeanum has been assembled from Illumina pair-end sequencing. This genome was 158,401 bp in length, consisting of a pair of inverted repeats (IRs) of 27,446 bp which separated by a large single copy (LSC) region and a small single...
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| description | The complete chloroplast genome (cp genome) sequence of
Zanthoxylum bungeanum
has been assembled from Illumina pair-end sequencing. This genome was 158,401 bp in length, consisting of a pair of inverted repeats (IRs) of 27,446 bp which separated by a large single copy (LSC) region and a small single copy (SSC) region (85,898 and 17,611 bp in length, respectively). There are 132 genes, including 87 protein-coding genes (78 PCG species), 37 rRNA genes (30 rRNA species) and eight tRNA genes (four tRNA species) in the cp genome. The overall GC content of the whole genome is 38.6 %, while the corresponding values of the LSC, SSC, and IR regions are 36.87, 33.51 and 42.54 %, respectively. Phylogenetic analysis indicated that the cp genome of
Z. bungeanum
is closely related to that of congeneric
Zanthoxylum piperitum
. |
| doi_str_mv | 10.1007/s12686-016-0609-9 |
| format | Article |
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Zanthoxylum bungeanum
has been assembled from Illumina pair-end sequencing. This genome was 158,401 bp in length, consisting of a pair of inverted repeats (IRs) of 27,446 bp which separated by a large single copy (LSC) region and a small single copy (SSC) region (85,898 and 17,611 bp in length, respectively). There are 132 genes, including 87 protein-coding genes (78 PCG species), 37 rRNA genes (30 rRNA species) and eight tRNA genes (four tRNA species) in the cp genome. The overall GC content of the whole genome is 38.6 %, while the corresponding values of the LSC, SSC, and IR regions are 36.87, 33.51 and 42.54 %, respectively. Phylogenetic analysis indicated that the cp genome of
Z. bungeanum
is closely related to that of congeneric
Zanthoxylum piperitum
.</description><identifier>ISSN: 1877-7252</identifier><identifier>EISSN: 1877-7260</identifier><identifier>DOI: 10.1007/s12686-016-0609-9</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Animal Genetics and Genomics ; Biodiversity ; Biomedical and Life Sciences ; Chloroplasts ; Conservation Biology/Ecology ; Ecology ; Evolutionary Biology ; Genomes ; Life Sciences ; Nucleotide sequence ; Phylogeny ; Plant Genetics and Genomics ; rRNA ; Species ; Technical Note ; tRNA ; Zanthoxylum bungeanum</subject><ispartof>Conservation genetics resources, 2017-03, Vol.9 (1), p.25-27</ispartof><rights>Springer Science+Business Media Dordrecht 2016</rights><rights>Springer Science+Business Media Dordrecht 2016.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-p156t-c32ee2e94c778069ea74b1bb8f2a7682cfbe4d94069dccd647c736fd188fd8633</cites><orcidid>0000-0003-3532-1878</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s12686-016-0609-9$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s12686-016-0609-9$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27903,27904,41467,42536,51298</link.rule.ids></links><search><creatorcontrib>Liu, Yulin</creatorcontrib><creatorcontrib>Wei, Anzhi</creatorcontrib><title>The complete chloroplast genome sequence of an economically important plant, Zanthoxylum bungeanum (Rutaceae)</title><title>Conservation genetics resources</title><addtitle>Conservation Genet Resour</addtitle><description>The complete chloroplast genome (cp genome) sequence of
Zanthoxylum bungeanum
has been assembled from Illumina pair-end sequencing. This genome was 158,401 bp in length, consisting of a pair of inverted repeats (IRs) of 27,446 bp which separated by a large single copy (LSC) region and a small single copy (SSC) region (85,898 and 17,611 bp in length, respectively). There are 132 genes, including 87 protein-coding genes (78 PCG species), 37 rRNA genes (30 rRNA species) and eight tRNA genes (four tRNA species) in the cp genome. The overall GC content of the whole genome is 38.6 %, while the corresponding values of the LSC, SSC, and IR regions are 36.87, 33.51 and 42.54 %, respectively. Phylogenetic analysis indicated that the cp genome of
Z. bungeanum
is closely related to that of congeneric
Zanthoxylum piperitum
.</description><subject>Animal Genetics and Genomics</subject><subject>Biodiversity</subject><subject>Biomedical and Life Sciences</subject><subject>Chloroplasts</subject><subject>Conservation Biology/Ecology</subject><subject>Ecology</subject><subject>Evolutionary Biology</subject><subject>Genomes</subject><subject>Life Sciences</subject><subject>Nucleotide sequence</subject><subject>Phylogeny</subject><subject>Plant Genetics and Genomics</subject><subject>rRNA</subject><subject>Species</subject><subject>Technical Note</subject><subject>tRNA</subject><subject>Zanthoxylum bungeanum</subject><issn>1877-7252</issn><issn>1877-7260</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNpFUE1LxDAQDaLguvoDvAW8KFhN0m4-jrL4BQuCrBcvJU2n213SpDYpuP_elBU9zMxj5r2Z4SF0SckdJUTcB8q45BmhKThRmTpCMyqFyATj5PgPL9gpOgthRwiXOWMz1K1bwMZ3vYWYQGv94HurQ8QbcL4DHOBrBGcA-wZrh8H41N4abe0eb7veD1G7iJPExVv8mXLrv_d27HA1ug1ol9D1-xi1AQ035-ik0TbAxW-do4-nx_XyJVu9Pb8uH1ZZTxc8ZiZnAAxUYYSQhCvQoqhoVcmGacElM00FRa2KNKqNqXkhjMh5U1Mpm1ryPJ-jq8PefvDp_RDLnR8Hl06WbFJxoejEYgdW6Idtenb4Z1FSTraWB1vLZGs52Vqq_AcySW0j</recordid><startdate>20170301</startdate><enddate>20170301</enddate><creator>Liu, Yulin</creator><creator>Wei, Anzhi</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>8FE</scope><scope>8FH</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><orcidid>https://orcid.org/0000-0003-3532-1878</orcidid></search><sort><creationdate>20170301</creationdate><title>The complete chloroplast genome sequence of an economically important plant, Zanthoxylum bungeanum (Rutaceae)</title><author>Liu, Yulin ; Wei, Anzhi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p156t-c32ee2e94c778069ea74b1bb8f2a7682cfbe4d94069dccd647c736fd188fd8633</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Animal Genetics and Genomics</topic><topic>Biodiversity</topic><topic>Biomedical and Life Sciences</topic><topic>Chloroplasts</topic><topic>Conservation Biology/Ecology</topic><topic>Ecology</topic><topic>Evolutionary Biology</topic><topic>Genomes</topic><topic>Life Sciences</topic><topic>Nucleotide sequence</topic><topic>Phylogeny</topic><topic>Plant Genetics and Genomics</topic><topic>rRNA</topic><topic>Species</topic><topic>Technical Note</topic><topic>tRNA</topic><topic>Zanthoxylum bungeanum</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Yulin</creatorcontrib><creatorcontrib>Wei, Anzhi</creatorcontrib><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><jtitle>Conservation genetics resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liu, Yulin</au><au>Wei, Anzhi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete chloroplast genome sequence of an economically important plant, Zanthoxylum bungeanum (Rutaceae)</atitle><jtitle>Conservation genetics resources</jtitle><stitle>Conservation Genet Resour</stitle><date>2017-03-01</date><risdate>2017</risdate><volume>9</volume><issue>1</issue><spage>25</spage><epage>27</epage><pages>25-27</pages><issn>1877-7252</issn><eissn>1877-7260</eissn><abstract>The complete chloroplast genome (cp genome) sequence of
Zanthoxylum bungeanum
has been assembled from Illumina pair-end sequencing. This genome was 158,401 bp in length, consisting of a pair of inverted repeats (IRs) of 27,446 bp which separated by a large single copy (LSC) region and a small single copy (SSC) region (85,898 and 17,611 bp in length, respectively). There are 132 genes, including 87 protein-coding genes (78 PCG species), 37 rRNA genes (30 rRNA species) and eight tRNA genes (four tRNA species) in the cp genome. The overall GC content of the whole genome is 38.6 %, while the corresponding values of the LSC, SSC, and IR regions are 36.87, 33.51 and 42.54 %, respectively. Phylogenetic analysis indicated that the cp genome of
Z. bungeanum
is closely related to that of congeneric
Zanthoxylum piperitum
.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s12686-016-0609-9</doi><tpages>3</tpages><orcidid>https://orcid.org/0000-0003-3532-1878</orcidid></addata></record> |
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| ispartof | Conservation genetics resources, 2017-03, Vol.9 (1), p.25-27 |
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| language | eng |
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| source | Springer Nature - Complete Springer Journals |
| subjects | Animal Genetics and Genomics Biodiversity Biomedical and Life Sciences Chloroplasts Conservation Biology/Ecology Ecology Evolutionary Biology Genomes Life Sciences Nucleotide sequence Phylogeny Plant Genetics and Genomics rRNA Species Technical Note tRNA Zanthoxylum bungeanum |
| title | The complete chloroplast genome sequence of an economically important plant, Zanthoxylum bungeanum (Rutaceae) |
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