The complete chloroplast genome of a rare fern species from North China, Botrychium lunaria (Ophioglossaceae)
Species in the genus Botrychium are tiny herbaceous plants with simple morphology that are widely distributed in the northern hemisphere. The phylogenetic relationship intra the genus is not well resolved, different species/populations from North America, Europe, and Asia demonstrate a paraphyletic...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2020-04, Vol.5 (2), p.1313-1314 |
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| creator | Shen, Xue-Li Tong, Ling Lei, Feng-Wei Zhu, Yi-Xuan Mu, Xian-Yun Jiang, Wan-Jie |
| description | Species in the genus Botrychium are tiny herbaceous plants with simple morphology that are widely distributed in the northern hemisphere. The phylogenetic relationship intra the genus is not well resolved, different species/populations from North America, Europe, and Asia demonstrate a paraphyletic relationship, including Botrychium lunaria. In this study, we reported the first complete chloroplast genome sequence of B. lunaria from Chinese population. It is 138,558 bp in length, and composed with a typical quadripartite structure. The overall GC content is 44.40%. In total, 129 genes were annotated, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. A maximum-likelihood tree of primitive fern lineage based on complete chloroplast genome sequence data was constructed. The phylogenetic analysis indicated that Botrychium is closely related to other basal fern lineages, such as Helminthostachys, Ophioglossum, and Mankyua. Furthermore, the genomic data generated in this study will provide helpful information for the conservation of B. lunaria in Beijing, China. |
| doi_str_mv | 10.1080/23802359.2020.1732243 |
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The phylogenetic relationship intra the genus is not well resolved, different species/populations from North America, Europe, and Asia demonstrate a paraphyletic relationship, including Botrychium lunaria. In this study, we reported the first complete chloroplast genome sequence of B. lunaria from Chinese population. It is 138,558 bp in length, and composed with a typical quadripartite structure. The overall GC content is 44.40%. In total, 129 genes were annotated, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. A maximum-likelihood tree of primitive fern lineage based on complete chloroplast genome sequence data was constructed. The phylogenetic analysis indicated that Botrychium is closely related to other basal fern lineages, such as Helminthostachys, Ophioglossum, and Mankyua. Furthermore, the genomic data generated in this study will provide helpful information for the conservation of B. lunaria in Beijing, China.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2020.1732243</identifier><language>eng</language><publisher>Abingdon: Taylor & Francis</publisher><subject>Botrychium ; Botrychium lunaria ; Chloroplasts ; complete chloroplast genome ; Ferns ; Genomes ; Nucleotide sequence ; Ophioglossaceae ; Phylogenetics ; Phylogeny ; Rare species ; rRNA ; tRNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2020-04, Vol.5 (2), p.1313-1314</ispartof><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2020</rights><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 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Furthermore, the genomic data generated in this study will provide helpful information for the conservation of B. lunaria in Beijing, China.</description><subject>Botrychium</subject><subject>Botrychium lunaria</subject><subject>Chloroplasts</subject><subject>complete chloroplast genome</subject><subject>Ferns</subject><subject>Genomes</subject><subject>Nucleotide sequence</subject><subject>Ophioglossaceae</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Rare species</subject><subject>rRNA</subject><subject>tRNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kU9v1DAQxSNUJKrSj4BkiQtI3eI_8Tq5AauWVqropZytsTPeeJXEYZwV2m-Ply2IU08ev3nz7NGvqt4Jfi14wz9J1XCpdHstuSySUVLW6lV1ftRXx8bZf_Wb6jLnHedcrJUxrTmvxqcemU_jPOBSin5IlOYB8sK2OKURWQoMGAEhC0gTyzP6iJkFSiP7nmjp2aaPE1yxr2mhg-_jfmTDfgKKwD48zn1M2yHlDB4BP76tXgcYMl4-nxfVj9ubp83d6uHx2_3my8PK11osKy2AIxem3IxS2ktAseZNI0wNkiuHTiFvwaCUToa2VTyYzjVr3WpAV3fqoro_5XYJdnamOAIdbIJo_wiJthZoiX5Ai04rI1xjHBc1au1q0a4NdLLm0suWl6z3p6yZ0s895sXu0p6m8n1bPEo0qtZtcemTy1PZljD8e1VwewRl_4KyR1D2GVSZ-3yai1NINMKvRENnFzgUEIFg8jFb9XLEb41hmDo</recordid><startdate>20200402</startdate><enddate>20200402</enddate><creator>Shen, Xue-Li</creator><creator>Tong, Ling</creator><creator>Lei, Feng-Wei</creator><creator>Zhu, Yi-Xuan</creator><creator>Mu, Xian-Yun</creator><creator>Jiang, Wan-Jie</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>DOA</scope></search><sort><creationdate>20200402</creationdate><title>The complete chloroplast genome of a rare fern species from North China, Botrychium lunaria (Ophioglossaceae)</title><author>Shen, Xue-Li ; Tong, Ling ; Lei, Feng-Wei ; Zhu, Yi-Xuan ; Mu, Xian-Yun ; Jiang, Wan-Jie</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c451t-51a0e017c457335c2ae16088174a203beb3e09a7e22b2f9930f7db86595aeb4d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Botrychium</topic><topic>Botrychium lunaria</topic><topic>Chloroplasts</topic><topic>complete chloroplast genome</topic><topic>Ferns</topic><topic>Genomes</topic><topic>Nucleotide sequence</topic><topic>Ophioglossaceae</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Rare species</topic><topic>rRNA</topic><topic>tRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shen, Xue-Li</creatorcontrib><creatorcontrib>Tong, Ling</creatorcontrib><creatorcontrib>Lei, Feng-Wei</creatorcontrib><creatorcontrib>Zhu, Yi-Xuan</creatorcontrib><creatorcontrib>Mu, Xian-Yun</creatorcontrib><creatorcontrib>Jiang, Wan-Jie</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. 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| subjects | Botrychium Botrychium lunaria Chloroplasts complete chloroplast genome Ferns Genomes Nucleotide sequence Ophioglossaceae Phylogenetics Phylogeny Rare species rRNA tRNA |
| title | The complete chloroplast genome of a rare fern species from North China, Botrychium lunaria (Ophioglossaceae) |
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