Adaptive Feature Selection Guided Deep Forest for COVID-19 Classification with Chest CT
Chest computed tomography (CT) becomes an effective tool to assist the diagnosis of coronavirus disease-19 (COVID-19). Due to the outbreak of COVID-19 worldwide, using the computed-aided diagnosis technique for COVID-19 classification based on CT images could largely alleviate the burden of clinicia...
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creator | Sun, Liang Mo, Zhanhao Yan, Fuhua Xia, Liming Shan, Fei Ding, Zhongxiang Shao, Wei Shi, Feng Yuan, Huan Jiang, Huiting Wu, Dijia Wei, Ying Gao, Yaozong Gao, Wanchun He, Sui Zhang, Daoqiang Shen, Dinggang |
description | Chest computed tomography (CT) becomes an effective tool to assist the diagnosis of coronavirus disease-19 (COVID-19). Due to the outbreak of COVID-19 worldwide, using the computed-aided diagnosis technique for COVID-19 classification based on CT images could largely alleviate the burden of clinicians. In this paper, we propose an Adaptive Feature Selection guided Deep Forest (AFS-DF) for COVID-19 classification based on chest CT images. Specifically, we first extract location-specific features from CT images. Then, in order to capture the high-level representation of these features with the relatively small-scale data, we leverage a deep forest model to learn high-level representation of the features. Moreover, we propose a feature selection method based on the trained deep forest model to reduce the redundancy of features, where the feature selection could be adaptively incorporated with the COVID-19 classification model. We evaluated our proposed AFS-DF on COVID-19 dataset with 1495 patients of COVID-19 and 1027 patients of community acquired pneumonia (CAP). The accuracy (ACC), sensitivity (SEN), specificity (SPE) and AUC achieved by our method are 91.79%, 93.05%, 89.95% and 96.35%, respectively. Experimental results on the COVID-19 dataset suggest that the proposed AFS-DF achieves superior performance in COVID-19 vs. CAP classification, compared with 4 widely used machine learning methods. |
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Due to the outbreak of COVID-19 worldwide, using the computed-aided diagnosis technique for COVID-19 classification based on CT images could largely alleviate the burden of clinicians. In this paper, we propose an Adaptive Feature Selection guided Deep Forest (AFS-DF) for COVID-19 classification based on chest CT images. Specifically, we first extract location-specific features from CT images. Then, in order to capture the high-level representation of these features with the relatively small-scale data, we leverage a deep forest model to learn high-level representation of the features. Moreover, we propose a feature selection method based on the trained deep forest model to reduce the redundancy of features, where the feature selection could be adaptively incorporated with the COVID-19 classification model. We evaluated our proposed AFS-DF on COVID-19 dataset with 1495 patients of COVID-19 and 1027 patients of community acquired pneumonia (CAP). The accuracy (ACC), sensitivity (SEN), specificity (SPE) and AUC achieved by our method are 91.79%, 93.05%, 89.95% and 96.35%, respectively. Experimental results on the COVID-19 dataset suggest that the proposed AFS-DF achieves superior performance in COVID-19 vs. CAP classification, compared with 4 widely used machine learning methods.</description><identifier>EISSN: 2331-8422</identifier><language>eng</language><publisher>Ithaca: Cornell University Library, arXiv.org</publisher><subject>Chest ; Classification ; Computed tomography ; Coronaviruses ; COVID-19 ; Datasets ; Diagnosis ; Feature extraction ; Forests ; Image classification ; Machine learning ; Medical imaging ; Redundancy ; Representations ; Viral diseases</subject><ispartof>arXiv.org, 2020-05</ispartof><rights>2020. This work is published under http://arxiv.org/licenses/nonexclusive-distrib/1.0/ (the “License”). 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Due to the outbreak of COVID-19 worldwide, using the computed-aided diagnosis technique for COVID-19 classification based on CT images could largely alleviate the burden of clinicians. In this paper, we propose an Adaptive Feature Selection guided Deep Forest (AFS-DF) for COVID-19 classification based on chest CT images. Specifically, we first extract location-specific features from CT images. Then, in order to capture the high-level representation of these features with the relatively small-scale data, we leverage a deep forest model to learn high-level representation of the features. Moreover, we propose a feature selection method based on the trained deep forest model to reduce the redundancy of features, where the feature selection could be adaptively incorporated with the COVID-19 classification model. We evaluated our proposed AFS-DF on COVID-19 dataset with 1495 patients of COVID-19 and 1027 patients of community acquired pneumonia (CAP). The accuracy (ACC), sensitivity (SEN), specificity (SPE) and AUC achieved by our method are 91.79%, 93.05%, 89.95% and 96.35%, respectively. Experimental results on the COVID-19 dataset suggest that the proposed AFS-DF achieves superior performance in COVID-19 vs. CAP classification, compared with 4 widely used machine learning methods.</description><subject>Chest</subject><subject>Classification</subject><subject>Computed tomography</subject><subject>Coronaviruses</subject><subject>COVID-19</subject><subject>Datasets</subject><subject>Diagnosis</subject><subject>Feature extraction</subject><subject>Forests</subject><subject>Image classification</subject><subject>Machine learning</subject><subject>Medical imaging</subject><subject>Redundancy</subject><subject>Representations</subject><subject>Viral diseases</subject><issn>2331-8422</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><recordid>eNqNzssKgkAYhuEhCJLyHn5oLeh4SJcxZrVqkdRSBv3FEXFsDnX7WXQBrb7F-yy-BXFoGAZeGlG6Iq7Wve_7NNnROA4dct83fDLiiVAgN1YhXHHA2gg5wtGKBhvIEScopEJtoJUK2OV2zr0gAzZwrUUrav7lL2E6YN2HsXJDli0fNLq_XZNtcSjZyZuUfNjZVL20apxTRaP5UJBmSRT-p95vtj-s</recordid><startdate>20200507</startdate><enddate>20200507</enddate><creator>Sun, Liang</creator><creator>Mo, Zhanhao</creator><creator>Yan, Fuhua</creator><creator>Xia, Liming</creator><creator>Shan, Fei</creator><creator>Ding, Zhongxiang</creator><creator>Shao, Wei</creator><creator>Shi, Feng</creator><creator>Yuan, Huan</creator><creator>Jiang, Huiting</creator><creator>Wu, Dijia</creator><creator>Wei, Ying</creator><creator>Gao, Yaozong</creator><creator>Gao, Wanchun</creator><creator>He, Sui</creator><creator>Zhang, Daoqiang</creator><creator>Shen, Dinggang</creator><general>Cornell University Library, arXiv.org</general><scope>8FE</scope><scope>8FG</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>CCPQU</scope><scope>COVID</scope><scope>DWQXO</scope><scope>HCIFZ</scope><scope>L6V</scope><scope>M7S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope></search><sort><creationdate>20200507</creationdate><title>Adaptive Feature Selection Guided Deep Forest for COVID-19 Classification with Chest CT</title><author>Sun, Liang ; Mo, Zhanhao ; Yan, Fuhua ; Xia, Liming ; Shan, Fei ; Ding, Zhongxiang ; Shao, Wei ; Shi, Feng ; Yuan, Huan ; Jiang, Huiting ; Wu, Dijia ; Wei, Ying ; Gao, Yaozong ; Gao, Wanchun ; He, Sui ; Zhang, Daoqiang ; Shen, Dinggang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-proquest_journals_24000189643</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Chest</topic><topic>Classification</topic><topic>Computed tomography</topic><topic>Coronaviruses</topic><topic>COVID-19</topic><topic>Datasets</topic><topic>Diagnosis</topic><topic>Feature extraction</topic><topic>Forests</topic><topic>Image classification</topic><topic>Machine learning</topic><topic>Medical imaging</topic><topic>Redundancy</topic><topic>Representations</topic><topic>Viral diseases</topic><toplevel>online_resources</toplevel><creatorcontrib>Sun, Liang</creatorcontrib><creatorcontrib>Mo, Zhanhao</creatorcontrib><creatorcontrib>Yan, Fuhua</creatorcontrib><creatorcontrib>Xia, Liming</creatorcontrib><creatorcontrib>Shan, Fei</creatorcontrib><creatorcontrib>Ding, Zhongxiang</creatorcontrib><creatorcontrib>Shao, Wei</creatorcontrib><creatorcontrib>Shi, Feng</creatorcontrib><creatorcontrib>Yuan, Huan</creatorcontrib><creatorcontrib>Jiang, Huiting</creatorcontrib><creatorcontrib>Wu, Dijia</creatorcontrib><creatorcontrib>Wei, Ying</creatorcontrib><creatorcontrib>Gao, Yaozong</creatorcontrib><creatorcontrib>Gao, Wanchun</creatorcontrib><creatorcontrib>He, Sui</creatorcontrib><creatorcontrib>Zhang, Daoqiang</creatorcontrib><creatorcontrib>Shen, Dinggang</creatorcontrib><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest One Community College</collection><collection>Coronavirus Research Database</collection><collection>ProQuest Central Korea</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Engineering Collection</collection><collection>Engineering Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering Collection</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sun, Liang</au><au>Mo, Zhanhao</au><au>Yan, Fuhua</au><au>Xia, Liming</au><au>Shan, Fei</au><au>Ding, Zhongxiang</au><au>Shao, Wei</au><au>Shi, Feng</au><au>Yuan, Huan</au><au>Jiang, Huiting</au><au>Wu, Dijia</au><au>Wei, Ying</au><au>Gao, Yaozong</au><au>Gao, Wanchun</au><au>He, Sui</au><au>Zhang, Daoqiang</au><au>Shen, Dinggang</au><format>book</format><genre>document</genre><ristype>GEN</ristype><atitle>Adaptive Feature Selection Guided Deep Forest for COVID-19 Classification with Chest CT</atitle><jtitle>arXiv.org</jtitle><date>2020-05-07</date><risdate>2020</risdate><eissn>2331-8422</eissn><abstract>Chest computed tomography (CT) becomes an effective tool to assist the diagnosis of coronavirus disease-19 (COVID-19). Due to the outbreak of COVID-19 worldwide, using the computed-aided diagnosis technique for COVID-19 classification based on CT images could largely alleviate the burden of clinicians. In this paper, we propose an Adaptive Feature Selection guided Deep Forest (AFS-DF) for COVID-19 classification based on chest CT images. Specifically, we first extract location-specific features from CT images. Then, in order to capture the high-level representation of these features with the relatively small-scale data, we leverage a deep forest model to learn high-level representation of the features. Moreover, we propose a feature selection method based on the trained deep forest model to reduce the redundancy of features, where the feature selection could be adaptively incorporated with the COVID-19 classification model. We evaluated our proposed AFS-DF on COVID-19 dataset with 1495 patients of COVID-19 and 1027 patients of community acquired pneumonia (CAP). The accuracy (ACC), sensitivity (SEN), specificity (SPE) and AUC achieved by our method are 91.79%, 93.05%, 89.95% and 96.35%, respectively. Experimental results on the COVID-19 dataset suggest that the proposed AFS-DF achieves superior performance in COVID-19 vs. CAP classification, compared with 4 widely used machine learning methods.</abstract><cop>Ithaca</cop><pub>Cornell University Library, arXiv.org</pub><oa>free_for_read</oa></addata></record> |
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subjects | Chest Classification Computed tomography Coronaviruses COVID-19 Datasets Diagnosis Feature extraction Forests Image classification Machine learning Medical imaging Redundancy Representations Viral diseases |
title | Adaptive Feature Selection Guided Deep Forest for COVID-19 Classification with Chest CT |
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