Versatile Sensing Platform for Cd2+ Detection in Rice Samples and Its Applications in Logic Gate Computation
A versatile sensing platform was designed for Cd2+ detection utilizing Mg2+-dependent DNAzyme as the biocatalyst and toehold-mediated strand replacement as the reaction mechanism. The Cd2+–aptamer interaction brings the split subunits of the Mg2+-dependent DNAzyme into close-enough proximity, which...
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Veröffentlicht in: | Analytical chemistry (Washington) 2020-04, Vol.92 (8), p.6173-6180 |
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creator | Chen, Junhua Pan, Jiafeng Liu, Chengshuai |
description | A versatile sensing platform was designed for Cd2+ detection utilizing Mg2+-dependent DNAzyme as the biocatalyst and toehold-mediated strand replacement as the reaction mechanism. The Cd2+–aptamer interaction brings the split subunits of the Mg2+-dependent DNAzyme into close-enough proximity, which generates an active DNAzyme that can catalyze the cleavage reaction toward the hairpin substrate strand (H1). The trigger DNA fragment in H1 can open another hairpin probe (H2) to activate the cyclic signal amplification process. The generated numerous G-quadruplex DNAzyme structures will produce a high fluorescence response after incubation with the fluorescence dye N-methyl mesoporphyrin IX (NMM). This detection platform is ultrasensitive and the detection limit (LOD) is 2.5 pM (S/N = 3). The sensing system is robust and can work effectively even in a complex sample matrix, enabling the quantitative analysis of Cd2+ content in rice samples with good reliability. Showing the unique features of simple operation, label-free and enzyme-free format, high sensitivity and selectivity, and universal signal amplification mode, our proposed sensing protocol holds great promise for becoming a competitive alternative for the routine monitoring of Cd2+ pollution. Importantly, this flexible and versatile sensing platform was used to construct some exquisite logic gates, including AND, OR, INHIBIT, IMPLICATION, NOR, and NAND. |
doi_str_mv | 10.1021/acs.analchem.0c01022 |
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The Cd2+–aptamer interaction brings the split subunits of the Mg2+-dependent DNAzyme into close-enough proximity, which generates an active DNAzyme that can catalyze the cleavage reaction toward the hairpin substrate strand (H1). The trigger DNA fragment in H1 can open another hairpin probe (H2) to activate the cyclic signal amplification process. The generated numerous G-quadruplex DNAzyme structures will produce a high fluorescence response after incubation with the fluorescence dye N-methyl mesoporphyrin IX (NMM). This detection platform is ultrasensitive and the detection limit (LOD) is 2.5 pM (S/N = 3). The sensing system is robust and can work effectively even in a complex sample matrix, enabling the quantitative analysis of Cd2+ content in rice samples with good reliability. Showing the unique features of simple operation, label-free and enzyme-free format, high sensitivity and selectivity, and universal signal amplification mode, our proposed sensing protocol holds great promise for becoming a competitive alternative for the routine monitoring of Cd2+ pollution. Importantly, this flexible and versatile sensing platform was used to construct some exquisite logic gates, including AND, OR, INHIBIT, IMPLICATION, NOR, and NAND.</description><identifier>ISSN: 0003-2700</identifier><identifier>EISSN: 1520-6882</identifier><identifier>DOI: 10.1021/acs.analchem.0c01022</identifier><language>eng</language><publisher>Washington: American Chemical Society</publisher><subject>Amplification ; Analytical chemistry ; Aptamers ; Cadmium ; Chemistry ; Deoxyribonucleic acid ; Detection ; DNA ; Environmental monitoring ; Fluorescence ; Logic circuits ; Magnesium ; Pollution monitoring ; Reaction mechanisms ; Reliability analysis ; Selectivity ; Signal processing ; Substrates</subject><ispartof>Analytical chemistry (Washington), 2020-04, Vol.92 (8), p.6173-6180</ispartof><rights>Copyright American Chemical Society Apr 21, 2020</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><orcidid>0000-0003-0133-0119 ; 0000-0001-9450-7272</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/acs.analchem.0c01022$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/acs.analchem.0c01022$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,780,784,27076,27924,27925,56738,56788</link.rule.ids></links><search><creatorcontrib>Chen, Junhua</creatorcontrib><creatorcontrib>Pan, Jiafeng</creatorcontrib><creatorcontrib>Liu, Chengshuai</creatorcontrib><title>Versatile Sensing Platform for Cd2+ Detection in Rice Samples and Its Applications in Logic Gate Computation</title><title>Analytical chemistry (Washington)</title><addtitle>Anal. Chem</addtitle><description>A versatile sensing platform was designed for Cd2+ detection utilizing Mg2+-dependent DNAzyme as the biocatalyst and toehold-mediated strand replacement as the reaction mechanism. The Cd2+–aptamer interaction brings the split subunits of the Mg2+-dependent DNAzyme into close-enough proximity, which generates an active DNAzyme that can catalyze the cleavage reaction toward the hairpin substrate strand (H1). The trigger DNA fragment in H1 can open another hairpin probe (H2) to activate the cyclic signal amplification process. The generated numerous G-quadruplex DNAzyme structures will produce a high fluorescence response after incubation with the fluorescence dye N-methyl mesoporphyrin IX (NMM). This detection platform is ultrasensitive and the detection limit (LOD) is 2.5 pM (S/N = 3). The sensing system is robust and can work effectively even in a complex sample matrix, enabling the quantitative analysis of Cd2+ content in rice samples with good reliability. Showing the unique features of simple operation, label-free and enzyme-free format, high sensitivity and selectivity, and universal signal amplification mode, our proposed sensing protocol holds great promise for becoming a competitive alternative for the routine monitoring of Cd2+ pollution. Importantly, this flexible and versatile sensing platform was used to construct some exquisite logic gates, including AND, OR, INHIBIT, IMPLICATION, NOR, and NAND.</description><subject>Amplification</subject><subject>Analytical chemistry</subject><subject>Aptamers</subject><subject>Cadmium</subject><subject>Chemistry</subject><subject>Deoxyribonucleic acid</subject><subject>Detection</subject><subject>DNA</subject><subject>Environmental monitoring</subject><subject>Fluorescence</subject><subject>Logic circuits</subject><subject>Magnesium</subject><subject>Pollution monitoring</subject><subject>Reaction mechanisms</subject><subject>Reliability analysis</subject><subject>Selectivity</subject><subject>Signal processing</subject><subject>Substrates</subject><issn>0003-2700</issn><issn>1520-6882</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNpFkF1LwzAUhoMoWKf_wIuAl9J5kjRNdjmqzkFB8eu2xDSdGemHTfb_l7qJN-fA-z68Fw9C1wTmBCi5U9rPVaec_jbtHDTEkJ6ghHAKaS4lPUUJALCUCoBzdOH9FoAQIHmC3KcZvQrWGfxmOm-7DX5xKjT92OJ4cFHTW3xvgtHB9h22HX61OrKqHZzxWHU1XgePl8PgrFYT4yeo7DdW45UKBhd9O-zCb3WJzhrlvLk6_hn6eHx4L57S8nm1LpZlqogUISUZNJJrzTKiG7rguskzyXNTS6kpqxUXjeA5lTITRuSRNvJLSUEEq0FoztgM3Rx2h7H_2Rkfqm2_G6MgX1G2yKggcTpScKCivn-AQDU5rabwz2l1dMr2ymxsNA</recordid><startdate>20200421</startdate><enddate>20200421</enddate><creator>Chen, Junhua</creator><creator>Pan, Jiafeng</creator><creator>Liu, Chengshuai</creator><general>American Chemical Society</general><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7TM</scope><scope>7U5</scope><scope>7U7</scope><scope>7U9</scope><scope>8BQ</scope><scope>8FD</scope><scope>C1K</scope><scope>F28</scope><scope>FR3</scope><scope>H8D</scope><scope>H8G</scope><scope>H94</scope><scope>JG9</scope><scope>JQ2</scope><scope>KR7</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>P64</scope><orcidid>https://orcid.org/0000-0003-0133-0119</orcidid><orcidid>https://orcid.org/0000-0001-9450-7272</orcidid></search><sort><creationdate>20200421</creationdate><title>Versatile Sensing Platform for Cd2+ Detection in Rice Samples and Its Applications in Logic Gate Computation</title><author>Chen, Junhua ; Pan, Jiafeng ; Liu, Chengshuai</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a187t-140f85cc341cf295cf64856ed88c23da57f75628847e76140e8ba87173d07c533</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Amplification</topic><topic>Analytical chemistry</topic><topic>Aptamers</topic><topic>Cadmium</topic><topic>Chemistry</topic><topic>Deoxyribonucleic acid</topic><topic>Detection</topic><topic>DNA</topic><topic>Environmental monitoring</topic><topic>Fluorescence</topic><topic>Logic circuits</topic><topic>Magnesium</topic><topic>Pollution monitoring</topic><topic>Reaction mechanisms</topic><topic>Reliability analysis</topic><topic>Selectivity</topic><topic>Signal processing</topic><topic>Substrates</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chen, Junhua</creatorcontrib><creatorcontrib>Pan, Jiafeng</creatorcontrib><creatorcontrib>Liu, Chengshuai</creatorcontrib><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Toxicology Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Copper Technical Reference Library</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Analytical chemistry (Washington)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chen, Junhua</au><au>Pan, Jiafeng</au><au>Liu, Chengshuai</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Versatile Sensing Platform for Cd2+ Detection in Rice Samples and Its Applications in Logic Gate Computation</atitle><jtitle>Analytical chemistry (Washington)</jtitle><addtitle>Anal. Chem</addtitle><date>2020-04-21</date><risdate>2020</risdate><volume>92</volume><issue>8</issue><spage>6173</spage><epage>6180</epage><pages>6173-6180</pages><issn>0003-2700</issn><eissn>1520-6882</eissn><abstract>A versatile sensing platform was designed for Cd2+ detection utilizing Mg2+-dependent DNAzyme as the biocatalyst and toehold-mediated strand replacement as the reaction mechanism. The Cd2+–aptamer interaction brings the split subunits of the Mg2+-dependent DNAzyme into close-enough proximity, which generates an active DNAzyme that can catalyze the cleavage reaction toward the hairpin substrate strand (H1). The trigger DNA fragment in H1 can open another hairpin probe (H2) to activate the cyclic signal amplification process. The generated numerous G-quadruplex DNAzyme structures will produce a high fluorescence response after incubation with the fluorescence dye N-methyl mesoporphyrin IX (NMM). This detection platform is ultrasensitive and the detection limit (LOD) is 2.5 pM (S/N = 3). The sensing system is robust and can work effectively even in a complex sample matrix, enabling the quantitative analysis of Cd2+ content in rice samples with good reliability. Showing the unique features of simple operation, label-free and enzyme-free format, high sensitivity and selectivity, and universal signal amplification mode, our proposed sensing protocol holds great promise for becoming a competitive alternative for the routine monitoring of Cd2+ pollution. Importantly, this flexible and versatile sensing platform was used to construct some exquisite logic gates, including AND, OR, INHIBIT, IMPLICATION, NOR, and NAND.</abstract><cop>Washington</cop><pub>American Chemical Society</pub><doi>10.1021/acs.analchem.0c01022</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0003-0133-0119</orcidid><orcidid>https://orcid.org/0000-0001-9450-7272</orcidid></addata></record> |
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subjects | Amplification Analytical chemistry Aptamers Cadmium Chemistry Deoxyribonucleic acid Detection DNA Environmental monitoring Fluorescence Logic circuits Magnesium Pollution monitoring Reaction mechanisms Reliability analysis Selectivity Signal processing Substrates |
title | Versatile Sensing Platform for Cd2+ Detection in Rice Samples and Its Applications in Logic Gate Computation |
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