Strain visualization for strained macrocycles

Strain has a unique and sometimes unpredictable impact on the properties and reactivity of molecules. To thoroughly describe strain in molecules, a computational tool that relates strain energy to reactivity by localizing and quantifying strain was developed. Strain energy is calculated local to eve...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Chemical science (Cambridge) 2020-03, Vol.11 (15), p.3923-393
Hauptverfasser: Colwell, Curtis E, Price, Tavis W, Stauch, Tim, Jasti, Ramesh
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 393
container_issue 15
container_start_page 3923
container_title Chemical science (Cambridge)
container_volume 11
creator Colwell, Curtis E
Price, Tavis W
Stauch, Tim
Jasti, Ramesh
description Strain has a unique and sometimes unpredictable impact on the properties and reactivity of molecules. To thoroughly describe strain in molecules, a computational tool that relates strain energy to reactivity by localizing and quantifying strain was developed. Strain energy is calculated local to every coordinate in the molecule and areas of higher strain are shown experimentally to be more reactive. Not only does this tool directly compare strain energy in parts of the same molecule, but it also computes total strain to give a full picture of molecular strain energy. It is freely available to the public on GitHub under the name StrainViz and much of the workflow is automated to simplify use for non-experts. Unique insight into the reactivity of curved aromatic molecules and strained alkyne bioorthogonal reagents is described within. Strain has a unique and sometimes unpredictable impact on the properties and reactivity of molecules.
doi_str_mv 10.1039/d0sc00629g
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_proquest_journals_2389625429</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2540718704</sourcerecordid><originalsourceid>FETCH-LOGICAL-c561t-25aaa324434844869aea56892133742fd7e3e99874c5f31c7968f65abf6e5fc33</originalsourceid><addsrcrecordid>eNp9kUtLAzEUhYMottRu3CsVNyKM5j3JRpCqVRBcVNchzSR1yjxqMlOov97Y1vpYmM0NnI_DufcAcIjgBYJEXmYwGAg5ltMd0MWQooQzIne3fww7oB_CDMZHCGI43QcdQhHGguMuSMaN13k1WOSh1UX-rpu8rgau9oOwEmw2KLXxtVmawoYDsOd0EWx_M3vg5e72eXifPD6NHobXj4lhHDUJZlprgiklVFAquNRWMy4kRoSkFLsstcRKKVJqmCPIpJILx5meOG6ZM4T0wNXad95OSpsZW8UwhZr7vNR-qWqdq99Klb-qab1QIi7IOY4GZxsDX7-1NjSqzIOxRaErW7dBYUZhikQKaURP_6CzuvVVXE9hIiSPKJaROl9T8RYheOu2YRBUn0WoGzgerooYRfj4Z_wt-nX2CJysAR_MVv1uUs0zF5mj_xjyASrSl0o</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2389625429</pqid></control><display><type>article</type><title>Strain visualization for strained macrocycles</title><source>DOAJ Directory of Open Access Journals</source><source>PubMed Central Open Access</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><creator>Colwell, Curtis E ; Price, Tavis W ; Stauch, Tim ; Jasti, Ramesh</creator><creatorcontrib>Colwell, Curtis E ; Price, Tavis W ; Stauch, Tim ; Jasti, Ramesh</creatorcontrib><description>Strain has a unique and sometimes unpredictable impact on the properties and reactivity of molecules. To thoroughly describe strain in molecules, a computational tool that relates strain energy to reactivity by localizing and quantifying strain was developed. Strain energy is calculated local to every coordinate in the molecule and areas of higher strain are shown experimentally to be more reactive. Not only does this tool directly compare strain energy in parts of the same molecule, but it also computes total strain to give a full picture of molecular strain energy. It is freely available to the public on GitHub under the name StrainViz and much of the workflow is automated to simplify use for non-experts. Unique insight into the reactivity of curved aromatic molecules and strained alkyne bioorthogonal reagents is described within. Strain has a unique and sometimes unpredictable impact on the properties and reactivity of molecules.</description><identifier>ISSN: 2041-6520</identifier><identifier>EISSN: 2041-6539</identifier><identifier>DOI: 10.1039/d0sc00629g</identifier><identifier>PMID: 34122862</identifier><language>eng</language><publisher>England: Royal Society of Chemistry</publisher><subject>Alkynes ; Chemistry ; Mathematical analysis ; Reactivity ; Reagents ; Software ; Workflow</subject><ispartof>Chemical science (Cambridge), 2020-03, Vol.11 (15), p.3923-393</ispartof><rights>This journal is © The Royal Society of Chemistry.</rights><rights>Copyright Royal Society of Chemistry 2020</rights><rights>This journal is © The Royal Society of Chemistry 2020 The Royal Society of Chemistry</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c561t-25aaa324434844869aea56892133742fd7e3e99874c5f31c7968f65abf6e5fc33</citedby><cites>FETCH-LOGICAL-c561t-25aaa324434844869aea56892133742fd7e3e99874c5f31c7968f65abf6e5fc33</cites><orcidid>0000-0002-4803-9233 ; 0000-0002-4762-1934 ; 0000-0002-8606-6339 ; 0000-0001-7599-3578</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8152662/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8152662/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34122862$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Colwell, Curtis E</creatorcontrib><creatorcontrib>Price, Tavis W</creatorcontrib><creatorcontrib>Stauch, Tim</creatorcontrib><creatorcontrib>Jasti, Ramesh</creatorcontrib><title>Strain visualization for strained macrocycles</title><title>Chemical science (Cambridge)</title><addtitle>Chem Sci</addtitle><description>Strain has a unique and sometimes unpredictable impact on the properties and reactivity of molecules. To thoroughly describe strain in molecules, a computational tool that relates strain energy to reactivity by localizing and quantifying strain was developed. Strain energy is calculated local to every coordinate in the molecule and areas of higher strain are shown experimentally to be more reactive. Not only does this tool directly compare strain energy in parts of the same molecule, but it also computes total strain to give a full picture of molecular strain energy. It is freely available to the public on GitHub under the name StrainViz and much of the workflow is automated to simplify use for non-experts. Unique insight into the reactivity of curved aromatic molecules and strained alkyne bioorthogonal reagents is described within. Strain has a unique and sometimes unpredictable impact on the properties and reactivity of molecules.</description><subject>Alkynes</subject><subject>Chemistry</subject><subject>Mathematical analysis</subject><subject>Reactivity</subject><subject>Reagents</subject><subject>Software</subject><subject>Workflow</subject><issn>2041-6520</issn><issn>2041-6539</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp9kUtLAzEUhYMottRu3CsVNyKM5j3JRpCqVRBcVNchzSR1yjxqMlOov97Y1vpYmM0NnI_DufcAcIjgBYJEXmYwGAg5ltMd0MWQooQzIne3fww7oB_CDMZHCGI43QcdQhHGguMuSMaN13k1WOSh1UX-rpu8rgau9oOwEmw2KLXxtVmawoYDsOd0EWx_M3vg5e72eXifPD6NHobXj4lhHDUJZlprgiklVFAquNRWMy4kRoSkFLsstcRKKVJqmCPIpJILx5meOG6ZM4T0wNXad95OSpsZW8UwhZr7vNR-qWqdq99Klb-qab1QIi7IOY4GZxsDX7-1NjSqzIOxRaErW7dBYUZhikQKaURP_6CzuvVVXE9hIiSPKJaROl9T8RYheOu2YRBUn0WoGzgerooYRfj4Z_wt-nX2CJysAR_MVv1uUs0zF5mj_xjyASrSl0o</recordid><startdate>20200323</startdate><enddate>20200323</enddate><creator>Colwell, Curtis E</creator><creator>Price, Tavis W</creator><creator>Stauch, Tim</creator><creator>Jasti, Ramesh</creator><general>Royal Society of Chemistry</general><general>The Royal Society of Chemistry</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SR</scope><scope>8BQ</scope><scope>8FD</scope><scope>JG9</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-4803-9233</orcidid><orcidid>https://orcid.org/0000-0002-4762-1934</orcidid><orcidid>https://orcid.org/0000-0002-8606-6339</orcidid><orcidid>https://orcid.org/0000-0001-7599-3578</orcidid></search><sort><creationdate>20200323</creationdate><title>Strain visualization for strained macrocycles</title><author>Colwell, Curtis E ; Price, Tavis W ; Stauch, Tim ; Jasti, Ramesh</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c561t-25aaa324434844869aea56892133742fd7e3e99874c5f31c7968f65abf6e5fc33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Alkynes</topic><topic>Chemistry</topic><topic>Mathematical analysis</topic><topic>Reactivity</topic><topic>Reagents</topic><topic>Software</topic><topic>Workflow</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Colwell, Curtis E</creatorcontrib><creatorcontrib>Price, Tavis W</creatorcontrib><creatorcontrib>Stauch, Tim</creatorcontrib><creatorcontrib>Jasti, Ramesh</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Engineered Materials Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Materials Research Database</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Chemical science (Cambridge)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Colwell, Curtis E</au><au>Price, Tavis W</au><au>Stauch, Tim</au><au>Jasti, Ramesh</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Strain visualization for strained macrocycles</atitle><jtitle>Chemical science (Cambridge)</jtitle><addtitle>Chem Sci</addtitle><date>2020-03-23</date><risdate>2020</risdate><volume>11</volume><issue>15</issue><spage>3923</spage><epage>393</epage><pages>3923-393</pages><issn>2041-6520</issn><eissn>2041-6539</eissn><abstract>Strain has a unique and sometimes unpredictable impact on the properties and reactivity of molecules. To thoroughly describe strain in molecules, a computational tool that relates strain energy to reactivity by localizing and quantifying strain was developed. Strain energy is calculated local to every coordinate in the molecule and areas of higher strain are shown experimentally to be more reactive. Not only does this tool directly compare strain energy in parts of the same molecule, but it also computes total strain to give a full picture of molecular strain energy. It is freely available to the public on GitHub under the name StrainViz and much of the workflow is automated to simplify use for non-experts. Unique insight into the reactivity of curved aromatic molecules and strained alkyne bioorthogonal reagents is described within. Strain has a unique and sometimes unpredictable impact on the properties and reactivity of molecules.</abstract><cop>England</cop><pub>Royal Society of Chemistry</pub><pmid>34122862</pmid><doi>10.1039/d0sc00629g</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-4803-9233</orcidid><orcidid>https://orcid.org/0000-0002-4762-1934</orcidid><orcidid>https://orcid.org/0000-0002-8606-6339</orcidid><orcidid>https://orcid.org/0000-0001-7599-3578</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2041-6520
ispartof Chemical science (Cambridge), 2020-03, Vol.11 (15), p.3923-393
issn 2041-6520
2041-6539
language eng
recordid cdi_proquest_journals_2389625429
source DOAJ Directory of Open Access Journals; PubMed Central Open Access; EZB-FREE-00999 freely available EZB journals; PubMed Central
subjects Alkynes
Chemistry
Mathematical analysis
Reactivity
Reagents
Software
Workflow
title Strain visualization for strained macrocycles
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-26T06%3A16%3A30IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Strain%20visualization%20for%20strained%20macrocycles&rft.jtitle=Chemical%20science%20(Cambridge)&rft.au=Colwell,%20Curtis%20E&rft.date=2020-03-23&rft.volume=11&rft.issue=15&rft.spage=3923&rft.epage=393&rft.pages=3923-393&rft.issn=2041-6520&rft.eissn=2041-6539&rft_id=info:doi/10.1039/d0sc00629g&rft_dat=%3Cproquest_pubme%3E2540718704%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2389625429&rft_id=info:pmid/34122862&rfr_iscdi=true