Characteristics and complete genome sequence of the virulent Vibrio alginolyticus phage VAP7, isolated in Hainan, China
A novel Vibrio alginolyticus phage, VAP7, was isolated from seawater collected from Sanya, Hainan province, China. Whole-genome sequencing analysis revealed that phage VAP7 has a linear, double-stranded DNA genome of 144,685 bp with an average G+C content of 41.9% and a high degree of sequence simil...
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container_title | Archives of virology |
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creator | Gao, Mingming Qin, Yanhong Fan, Hang Zhang, Xianglilan Li, Puyuan Liu, Huiying Pei, Guangqian Mi, Zhiqiang Xu, Xuling Tong, Yigang Bai, Changqing |
description | A novel
Vibrio alginolyticus
phage, VAP7, was isolated from seawater collected from Sanya, Hainan province, China. Whole-genome sequencing analysis revealed that phage VAP7 has a linear, double-stranded DNA genome of 144,685 bp with an average G+C content of 41.9% and a high degree of sequence similarity to
Vibrio
phage VP-1. Annotation results identified 193 open reading frames and one transfer RNA-encoding gene in the phage genome. The morphology and the results of phylogenetic analysis suggest that VAP7 should be classified as a new member of the family
Ackermannviridae
. Moreover, phage VAP7 grew over a wide pH (5.0-10.0) and temperature (4-40 °C) range. Host-range experiments revealed that VAP7 could infect 31
Vibrio alginolyticus
strains. Thus, VAP7 infecting
Vibrio alginolyticus
strains represents a potential new candidate for use in phage therapy. |
doi_str_mv | 10.1007/s00705-020-04535-4 |
format | Article |
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Vibrio alginolyticus
phage, VAP7, was isolated from seawater collected from Sanya, Hainan province, China. Whole-genome sequencing analysis revealed that phage VAP7 has a linear, double-stranded DNA genome of 144,685 bp with an average G+C content of 41.9% and a high degree of sequence similarity to
Vibrio
phage VP-1. Annotation results identified 193 open reading frames and one transfer RNA-encoding gene in the phage genome. The morphology and the results of phylogenetic analysis suggest that VAP7 should be classified as a new member of the family
Ackermannviridae
. Moreover, phage VAP7 grew over a wide pH (5.0-10.0) and temperature (4-40 °C) range. Host-range experiments revealed that VAP7 could infect 31
Vibrio alginolyticus
strains. Thus, VAP7 infecting
Vibrio alginolyticus
strains represents a potential new candidate for use in phage therapy.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-020-04535-4</identifier><identifier>PMID: 32130520</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Bacteriophages - classification ; Bacteriophages - genetics ; Bacteriophages - pathogenicity ; Bacteriophages - physiology ; Base Composition ; Biomedical and Life Sciences ; Biomedicine ; Brief Report ; China ; DNA sequencing ; Genome, Viral ; Genomes ; Genomics ; Host Specificity ; Infectious Diseases ; Life Sciences & Biomedicine ; Medical Microbiology ; Nucleotide sequence ; Open Reading Frames ; Phages ; Phylogeny ; Podoviridae - classification ; Podoviridae - genetics ; Podoviridae - pathogenicity ; Ribonucleic acid ; RNA ; Science & Technology ; Seawater - virology ; Shells ; Transfer RNA ; Vibrio alginolyticus ; Vibrio alginolyticus - virology ; Virology ; Virulence ; Whole genome sequencing</subject><ispartof>Archives of virology, 2020-04, Vol.165 (4), p.947-953</ispartof><rights>Springer-Verlag GmbH Austria, part of Springer Nature 2020</rights><rights>Springer-Verlag GmbH Austria, part of Springer Nature 2020.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>true</woscitedreferencessubscribed><woscitedreferencescount>8</woscitedreferencescount><woscitedreferencesoriginalsourcerecordid>wos000523599000013</woscitedreferencesoriginalsourcerecordid><citedby>FETCH-LOGICAL-c441t-4f3ffe2681196b1ed02fc4f034003b18d135209e405750ad250fc7a91381c53e3</citedby><cites>FETCH-LOGICAL-c441t-4f3ffe2681196b1ed02fc4f034003b18d135209e405750ad250fc7a91381c53e3</cites><orcidid>0000-0003-1343-6244 ; 0000-0002-7927-1684</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-020-04535-4$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-020-04535-4$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>315,781,785,27929,27930,28253,41493,42562,51324</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32130520$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gao, Mingming</creatorcontrib><creatorcontrib>Qin, Yanhong</creatorcontrib><creatorcontrib>Fan, Hang</creatorcontrib><creatorcontrib>Zhang, Xianglilan</creatorcontrib><creatorcontrib>Li, Puyuan</creatorcontrib><creatorcontrib>Liu, Huiying</creatorcontrib><creatorcontrib>Pei, Guangqian</creatorcontrib><creatorcontrib>Mi, Zhiqiang</creatorcontrib><creatorcontrib>Xu, Xuling</creatorcontrib><creatorcontrib>Tong, Yigang</creatorcontrib><creatorcontrib>Bai, Changqing</creatorcontrib><title>Characteristics and complete genome sequence of the virulent Vibrio alginolyticus phage VAP7, isolated in Hainan, China</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>ARCH VIROL</addtitle><addtitle>Arch Virol</addtitle><description>A novel
Vibrio alginolyticus
phage, VAP7, was isolated from seawater collected from Sanya, Hainan province, China. Whole-genome sequencing analysis revealed that phage VAP7 has a linear, double-stranded DNA genome of 144,685 bp with an average G+C content of 41.9% and a high degree of sequence similarity to
Vibrio
phage VP-1. Annotation results identified 193 open reading frames and one transfer RNA-encoding gene in the phage genome. The morphology and the results of phylogenetic analysis suggest that VAP7 should be classified as a new member of the family
Ackermannviridae
. Moreover, phage VAP7 grew over a wide pH (5.0-10.0) and temperature (4-40 °C) range. Host-range experiments revealed that VAP7 could infect 31
Vibrio alginolyticus
strains. Thus, VAP7 infecting
Vibrio alginolyticus
strains represents a potential new candidate for use in phage therapy.</description><subject>Bacteriophages - classification</subject><subject>Bacteriophages - genetics</subject><subject>Bacteriophages - pathogenicity</subject><subject>Bacteriophages - physiology</subject><subject>Base Composition</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Brief Report</subject><subject>China</subject><subject>DNA sequencing</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Host Specificity</subject><subject>Infectious Diseases</subject><subject>Life Sciences & Biomedicine</subject><subject>Medical Microbiology</subject><subject>Nucleotide sequence</subject><subject>Open Reading Frames</subject><subject>Phages</subject><subject>Phylogeny</subject><subject>Podoviridae - classification</subject><subject>Podoviridae - genetics</subject><subject>Podoviridae - pathogenicity</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>Science & Technology</subject><subject>Seawater - virology</subject><subject>Shells</subject><subject>Transfer RNA</subject><subject>Vibrio alginolyticus</subject><subject>Vibrio alginolyticus - virology</subject><subject>Virology</subject><subject>Virulence</subject><subject>Whole genome sequencing</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>AOWDO</sourceid><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkU9rFTEUxQdR7LP6BVxIwI1gR2_-vcksy6BWKOhCux0ymZv3UmaSZ5Jp6bc3z6kVXIib3BB-53JOTlW9pPCOAjTvUzlA1sCgBiG5rMWjakMFZ7VqWvW42gAHUastqJPqWUrXAOWBy6fVCWeUg2SwqW67vY7aZIwuZWcS0X4kJsyHCTOSHfowI0n4Y0FvkARL8h7JjYvLhD6TKzdEF4ieds6H6a4sWBI57PUOydX51-aMuBQmnXEkzpML7bz2Z6Tbl_m8emL1lPDF_Tytvn_88K27qC-_fPrcnV_WRgiaa2G5tci2itJ2O1AcgVkjLHBRsgxUjZSXGC0KkI0EPTIJ1jS6pVxRIzny0-rNuvcQQwmRcj-7ZHCatMewpJ7xhiopqOIFff0Xeh2W6Iu7QqktBSWYLBRbKRNDShFtf4hu1vGup9Afa-nXWvpSS_-rll4U0av71csw4_gg-d1DAd6uwC0OwSbjjt_9gJXiJOOybcsF6NGp-n-6c1lnF3wXFp-LlK_SVHC_w_gn5D_8_wRsbreC</recordid><startdate>20200401</startdate><enddate>20200401</enddate><creator>Gao, Mingming</creator><creator>Qin, Yanhong</creator><creator>Fan, Hang</creator><creator>Zhang, Xianglilan</creator><creator>Li, Puyuan</creator><creator>Liu, Huiying</creator><creator>Pei, Guangqian</creator><creator>Mi, Zhiqiang</creator><creator>Xu, Xuling</creator><creator>Tong, Yigang</creator><creator>Bai, Changqing</creator><general>Springer Vienna</general><general>Springer Nature</general><general>Springer Nature B.V</general><scope>AOWDO</scope><scope>BLEPL</scope><scope>DTL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-1343-6244</orcidid><orcidid>https://orcid.org/0000-0002-7927-1684</orcidid></search><sort><creationdate>20200401</creationdate><title>Characteristics and complete genome sequence of the virulent Vibrio alginolyticus phage VAP7, isolated in Hainan, China</title><author>Gao, Mingming ; Qin, Yanhong ; Fan, Hang ; Zhang, Xianglilan ; Li, Puyuan ; Liu, Huiying ; Pei, Guangqian ; Mi, Zhiqiang ; Xu, Xuling ; Tong, Yigang ; Bai, Changqing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c441t-4f3ffe2681196b1ed02fc4f034003b18d135209e405750ad250fc7a91381c53e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Bacteriophages - classification</topic><topic>Bacteriophages - genetics</topic><topic>Bacteriophages - pathogenicity</topic><topic>Bacteriophages - physiology</topic><topic>Base Composition</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Brief Report</topic><topic>China</topic><topic>DNA sequencing</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Host Specificity</topic><topic>Infectious Diseases</topic><topic>Life Sciences & Biomedicine</topic><topic>Medical Microbiology</topic><topic>Nucleotide sequence</topic><topic>Open Reading Frames</topic><topic>Phages</topic><topic>Phylogeny</topic><topic>Podoviridae - classification</topic><topic>Podoviridae - genetics</topic><topic>Podoviridae - pathogenicity</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>Science & Technology</topic><topic>Seawater - virology</topic><topic>Shells</topic><topic>Transfer RNA</topic><topic>Vibrio alginolyticus</topic><topic>Vibrio alginolyticus - virology</topic><topic>Virology</topic><topic>Virulence</topic><topic>Whole genome sequencing</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gao, Mingming</creatorcontrib><creatorcontrib>Qin, Yanhong</creatorcontrib><creatorcontrib>Fan, Hang</creatorcontrib><creatorcontrib>Zhang, Xianglilan</creatorcontrib><creatorcontrib>Li, Puyuan</creatorcontrib><creatorcontrib>Liu, Huiying</creatorcontrib><creatorcontrib>Pei, Guangqian</creatorcontrib><creatorcontrib>Mi, Zhiqiang</creatorcontrib><creatorcontrib>Xu, Xuling</creatorcontrib><creatorcontrib>Tong, Yigang</creatorcontrib><creatorcontrib>Bai, Changqing</creatorcontrib><collection>Web of Science - Science Citation Index Expanded - 2020</collection><collection>Web of Science Core Collection</collection><collection>Science Citation Index Expanded</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gao, Mingming</au><au>Qin, Yanhong</au><au>Fan, Hang</au><au>Zhang, Xianglilan</au><au>Li, Puyuan</au><au>Liu, Huiying</au><au>Pei, Guangqian</au><au>Mi, Zhiqiang</au><au>Xu, Xuling</au><au>Tong, Yigang</au><au>Bai, Changqing</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characteristics and complete genome sequence of the virulent Vibrio alginolyticus phage VAP7, isolated in Hainan, China</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><stitle>ARCH VIROL</stitle><addtitle>Arch Virol</addtitle><date>2020-04-01</date><risdate>2020</risdate><volume>165</volume><issue>4</issue><spage>947</spage><epage>953</epage><pages>947-953</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>A novel
Vibrio alginolyticus
phage, VAP7, was isolated from seawater collected from Sanya, Hainan province, China. Whole-genome sequencing analysis revealed that phage VAP7 has a linear, double-stranded DNA genome of 144,685 bp with an average G+C content of 41.9% and a high degree of sequence similarity to
Vibrio
phage VP-1. Annotation results identified 193 open reading frames and one transfer RNA-encoding gene in the phage genome. The morphology and the results of phylogenetic analysis suggest that VAP7 should be classified as a new member of the family
Ackermannviridae
. Moreover, phage VAP7 grew over a wide pH (5.0-10.0) and temperature (4-40 °C) range. Host-range experiments revealed that VAP7 could infect 31
Vibrio alginolyticus
strains. Thus, VAP7 infecting
Vibrio alginolyticus
strains represents a potential new candidate for use in phage therapy.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>32130520</pmid><doi>10.1007/s00705-020-04535-4</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0003-1343-6244</orcidid><orcidid>https://orcid.org/0000-0002-7927-1684</orcidid></addata></record> |
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subjects | Bacteriophages - classification Bacteriophages - genetics Bacteriophages - pathogenicity Bacteriophages - physiology Base Composition Biomedical and Life Sciences Biomedicine Brief Report China DNA sequencing Genome, Viral Genomes Genomics Host Specificity Infectious Diseases Life Sciences & Biomedicine Medical Microbiology Nucleotide sequence Open Reading Frames Phages Phylogeny Podoviridae - classification Podoviridae - genetics Podoviridae - pathogenicity Ribonucleic acid RNA Science & Technology Seawater - virology Shells Transfer RNA Vibrio alginolyticus Vibrio alginolyticus - virology Virology Virulence Whole genome sequencing |
title | Characteristics and complete genome sequence of the virulent Vibrio alginolyticus phage VAP7, isolated in Hainan, China |
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