Characterization of the complete chloroplast genome of Hovenia acerba (Rhamnaceae)
Hovenia acerba is a widely distributed species with economic, ornamental, and medicinal value in China. In this study, we assembled and characterized the complete chloroplast genome of H. acerba for the first time. The circular genome has a quadripartite structure with 161,651 bp in length and conta...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2020-01, Vol.5 (1), p.934-935 |
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| description | Hovenia acerba is a widely distributed species with economic, ornamental, and medicinal value in China. In this study, we assembled and characterized the complete chloroplast genome of H. acerba for the first time. The circular genome has a quadripartite structure with 161,651 bp in length and contains a pair of 26,619 bp inverted repeat (IR) regions, separated by the large single-copy (LSC, 89,443 bp) region and small single-copy (SSC, 18,970 bp) region. The plastid genome harbours 104 unique genes, including 72 protein-coding genes, 28 tRNAs, and four rRNAs. The overall GC content of the whole genome was 36.7%. Further, the phylogenetic analysis showed that H. acerba clustered together with Ziziphus genus. The complete chloroplast genome of H. acerba will provide important information for phylogenetic and evolutionary studies in Rhamnaceae, as well as the other closely related family. |
| doi_str_mv | 10.1080/23802359.2020.1714492 |
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In this study, we assembled and characterized the complete chloroplast genome of H. acerba for the first time. The circular genome has a quadripartite structure with 161,651 bp in length and contains a pair of 26,619 bp inverted repeat (IR) regions, separated by the large single-copy (LSC, 89,443 bp) region and small single-copy (SSC, 18,970 bp) region. The plastid genome harbours 104 unique genes, including 72 protein-coding genes, 28 tRNAs, and four rRNAs. The overall GC content of the whole genome was 36.7%. Further, the phylogenetic analysis showed that H. acerba clustered together with Ziziphus genus. The complete chloroplast genome of H. acerba will provide important information for phylogenetic and evolutionary studies in Rhamnaceae, as well as the other closely related family.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2020.1714492</identifier><identifier>PMID: 33366816</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>chloroplast genome ; Chloroplasts ; Genomes ; Hovenia ; Hovenia acerba ; Inverted repeat ; Mitogenome Announcement ; phylogenetic analysis ; Phylogenetics ; Phylogeny ; Rhamnaceae</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2020-01, Vol.5 (1), p.934-935</ispartof><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2020</rights><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2020 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c562t-d8fa04b2ac6b349d532a5b15fcf025308e290d7c611125a8b1bb6596f45dc6133</citedby><cites>FETCH-LOGICAL-c562t-d8fa04b2ac6b349d532a5b15fcf025308e290d7c611125a8b1bb6596f45dc6133</cites><orcidid>0000-0002-6620-5792</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748519/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748519/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,27479,27901,27902,53766,53768,59116,59117</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33366816$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Lin</creatorcontrib><creatorcontrib>Mao, Runli</creatorcontrib><creatorcontrib>Bi, Huitao</creatorcontrib><creatorcontrib>Shen, Jiemei</creatorcontrib><creatorcontrib>Wang, Yihan</creatorcontrib><creatorcontrib>Li, Mingwan</creatorcontrib><title>Characterization of the complete chloroplast genome of Hovenia acerba (Rhamnaceae)</title><title>Mitochondrial DNA. 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The complete chloroplast genome of H. acerba will provide important information for phylogenetic and evolutionary studies in Rhamnaceae, as well as the other closely related family.</description><subject>chloroplast genome</subject><subject>Chloroplasts</subject><subject>Genomes</subject><subject>Hovenia</subject><subject>Hovenia acerba</subject><subject>Inverted repeat</subject><subject>Mitogenome Announcement</subject><subject>phylogenetic analysis</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Rhamnaceae</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9Uk1vEzEQXSEQrUp_AmglLuWQ4u_1XhAoKrRSJaQKztb4K3G0awd7U1R-fb0krVoOnDx-8-aNPfOa5i1G5xhJ9JFQiQjl_TlBpEIdZqwnL5rjGV_MiZdP4qPmtJQNQggL2nV997o5opQKIbE4bm6Wa8hgJpfDH5hCim3y7bR2rUnjdnBTDdZDymk7QJnalYtpdDPlMt26GKAF47KG9uxmDWOsF3Af3jSvPAzFnR7Ok-bn14sfy8vF9fdvV8sv1wvDBZkWVnpATBMwQlPWW04JcI25Nx4RTpF0pEe2MwJjTDhIjbUWvBeecVtBSk-aq72uTbBR2xxGyHcqQVB_gZRXCvIUzOAUtT3T3hmMtWOgDRChUR0BR05bYruq9Wmvtd3p0Vnj4pRheCb6PBPDWq3Sreo6Jjnuq8DZQSCnXztXJjWGYtwwQHRpVxRhHWVYECkr9f0_1E3a5VhHpQgVtG5J8pnF9yyTUynZ-cfHYKRmE6gHE6jZBOpgglr37ulPHqseVl4Jn_eEEH3KI_xOebBqgru6Zp8hmlAU_X-Pe0phwKE</recordid><startdate>20200102</startdate><enddate>20200102</enddate><creator>Zhang, Lin</creator><creator>Mao, Runli</creator><creator>Bi, Huitao</creator><creator>Shen, Jiemei</creator><creator>Wang, Yihan</creator><creator>Li, Mingwan</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-6620-5792</orcidid></search><sort><creationdate>20200102</creationdate><title>Characterization of the complete chloroplast genome of Hovenia acerba (Rhamnaceae)</title><author>Zhang, Lin ; 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| subjects | chloroplast genome Chloroplasts Genomes Hovenia Hovenia acerba Inverted repeat Mitogenome Announcement phylogenetic analysis Phylogenetics Phylogeny Rhamnaceae |
| title | Characterization of the complete chloroplast genome of Hovenia acerba (Rhamnaceae) |
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