Simultaneous infection of sweet cherry with eight virus species including a new foveavirus
The agent causing bud blight disease (BBD) of sweet cherry ( Prunus avium ), first reported in Yamagata Prefecture, Japan, in the 1990s is graft-transmissible. Previously, little cherry virus 1 (LChV-1), little cherry virus-2 (LChV-2), cherry necrotic rusty mottle virus (CNRMV), cherry green ring mo...
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| Veröffentlicht in: | Journal of general plant pathology : JGPP 2020-03, Vol.86 (2), p.134-142 |
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| creator | Yaegashi, Hajime Oyamada, Saki Goto, Shinichi Yamagishi, Noriko Isogai, Masamichi Ito, Tsutae Yoshikawa, Nobuyuki |
| description | The agent causing bud blight disease (BBD) of sweet cherry (
Prunus avium
), first reported in Yamagata Prefecture, Japan, in the 1990s is graft-transmissible. Previously, little cherry virus 1 (LChV-1), little cherry virus-2 (LChV-2), cherry necrotic rusty mottle virus (CNRMV), cherry green ring mottle virus (CGRMV), and/or cherry virus A (CVA) were all detected from sweet cherry trees with BBD. Here, RNA viruses in sweet cherry trees with BBD were reinvestigated by high-throughput sequencing. Illumina RNA-sequencing of double-stranded RNAs from leaves of diseased cherry trees (S1, S2, S3, and S4) indicated that all trees were infected with at least six known viruses, LChV-1, LChV-2, CNRMV, CGRMV, CVA, prune dwarf virus (PDV), and/or apple chlorotic leaf spot virus. Thus, cherry trees with BBD are all infected with multiple viruses. Moreover, we found an undescribed novel virus of the family
Betaflexiviridae
(tentatively named cherry virus B, ChVB) in tree S3. The complete genome sequence of ChVB comprises 8806 nt, in which five open reading frames were found similar to the viruses of the genus
Foveavirus
. Homology search and phylogenetic analysis indicated that ChVB is a new species of the genus
Foveavirus
. |
| doi_str_mv | 10.1007/s10327-019-00896-0 |
| format | Article |
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Prunus avium
), first reported in Yamagata Prefecture, Japan, in the 1990s is graft-transmissible. Previously, little cherry virus 1 (LChV-1), little cherry virus-2 (LChV-2), cherry necrotic rusty mottle virus (CNRMV), cherry green ring mottle virus (CGRMV), and/or cherry virus A (CVA) were all detected from sweet cherry trees with BBD. Here, RNA viruses in sweet cherry trees with BBD were reinvestigated by high-throughput sequencing. Illumina RNA-sequencing of double-stranded RNAs from leaves of diseased cherry trees (S1, S2, S3, and S4) indicated that all trees were infected with at least six known viruses, LChV-1, LChV-2, CNRMV, CGRMV, CVA, prune dwarf virus (PDV), and/or apple chlorotic leaf spot virus. Thus, cherry trees with BBD are all infected with multiple viruses. Moreover, we found an undescribed novel virus of the family
Betaflexiviridae
(tentatively named cherry virus B, ChVB) in tree S3. The complete genome sequence of ChVB comprises 8806 nt, in which five open reading frames were found similar to the viruses of the genus
Foveavirus
. Homology search and phylogenetic analysis indicated that ChVB is a new species of the genus
Foveavirus
.</description><identifier>ISSN: 1345-2630</identifier><identifier>EISSN: 1610-739X</identifier><identifier>DOI: 10.1007/s10327-019-00896-0</identifier><language>eng</language><publisher>Tokyo: Springer Japan</publisher><subject>Agriculture ; Biomedical and Life Sciences ; Blight ; Bud blight ; Double-stranded RNA ; Fruit trees ; Fruits ; Gene sequencing ; Genomes ; Homology ; Leafspot ; Leaves ; Life Sciences ; Microbiology ; New species ; Next-generation sequencing ; Nucleotide sequence ; Open reading frames ; Phylogeny ; Plant Pathology ; Plant virus diseases ; Prunus avium ; RNA viruses ; Spot ; Trees ; Viral and Viroid Diseases ; Viruses</subject><ispartof>Journal of general plant pathology : JGPP, 2020-03, Vol.86 (2), p.134-142</ispartof><rights>The Phytopathological Society of Japan and Springer Japan KK, part of Springer Nature 2019</rights><rights>The Phytopathological Society of Japan and Springer Japan KK, part of Springer Nature 2019.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c319t-40a5981e20e8ab46b3a595649faf7a038b8fa21302f3b29244af0255b73edc1d3</citedby><cites>FETCH-LOGICAL-c319t-40a5981e20e8ab46b3a595649faf7a038b8fa21302f3b29244af0255b73edc1d3</cites><orcidid>0000-0002-4758-9612</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10327-019-00896-0$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10327-019-00896-0$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids></links><search><creatorcontrib>Yaegashi, Hajime</creatorcontrib><creatorcontrib>Oyamada, Saki</creatorcontrib><creatorcontrib>Goto, Shinichi</creatorcontrib><creatorcontrib>Yamagishi, Noriko</creatorcontrib><creatorcontrib>Isogai, Masamichi</creatorcontrib><creatorcontrib>Ito, Tsutae</creatorcontrib><creatorcontrib>Yoshikawa, Nobuyuki</creatorcontrib><title>Simultaneous infection of sweet cherry with eight virus species including a new foveavirus</title><title>Journal of general plant pathology : JGPP</title><addtitle>J Gen Plant Pathol</addtitle><description>The agent causing bud blight disease (BBD) of sweet cherry (
Prunus avium
), first reported in Yamagata Prefecture, Japan, in the 1990s is graft-transmissible. Previously, little cherry virus 1 (LChV-1), little cherry virus-2 (LChV-2), cherry necrotic rusty mottle virus (CNRMV), cherry green ring mottle virus (CGRMV), and/or cherry virus A (CVA) were all detected from sweet cherry trees with BBD. Here, RNA viruses in sweet cherry trees with BBD were reinvestigated by high-throughput sequencing. Illumina RNA-sequencing of double-stranded RNAs from leaves of diseased cherry trees (S1, S2, S3, and S4) indicated that all trees were infected with at least six known viruses, LChV-1, LChV-2, CNRMV, CGRMV, CVA, prune dwarf virus (PDV), and/or apple chlorotic leaf spot virus. Thus, cherry trees with BBD are all infected with multiple viruses. Moreover, we found an undescribed novel virus of the family
Betaflexiviridae
(tentatively named cherry virus B, ChVB) in tree S3. The complete genome sequence of ChVB comprises 8806 nt, in which five open reading frames were found similar to the viruses of the genus
Foveavirus
. Homology search and phylogenetic analysis indicated that ChVB is a new species of the genus
Foveavirus
.</description><subject>Agriculture</subject><subject>Biomedical and Life Sciences</subject><subject>Blight</subject><subject>Bud blight</subject><subject>Double-stranded RNA</subject><subject>Fruit trees</subject><subject>Fruits</subject><subject>Gene sequencing</subject><subject>Genomes</subject><subject>Homology</subject><subject>Leafspot</subject><subject>Leaves</subject><subject>Life Sciences</subject><subject>Microbiology</subject><subject>New species</subject><subject>Next-generation sequencing</subject><subject>Nucleotide sequence</subject><subject>Open reading frames</subject><subject>Phylogeny</subject><subject>Plant Pathology</subject><subject>Plant virus diseases</subject><subject>Prunus avium</subject><subject>RNA viruses</subject><subject>Spot</subject><subject>Trees</subject><subject>Viral and Viroid Diseases</subject><subject>Viruses</subject><issn>1345-2630</issn><issn>1610-739X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp9kE1LAzEQhoMoWKt_wFPAc3SSbDa7Ryl-QcGDCuIlZLeTNqXdrcluS_-9aVfw5mlm4HlnhoeQaw63HEDfRQ5SaAa8ZABFmTM4ISOec2Balp-nqZeZYiKXcE4uYlwCCC61GpGvN7_uV51tsO0j9Y3DuvNtQ1tH4w6xo_UCQ9jTne8WFP180dGtDwmNG6w9HiL1qp_5Zk4tbXBHXbtFe0QuyZmzq4hXv3VMPh4f3ifPbPr69DK5n7Ja8rJjGVhVFhwFYGGrLK9kmlWelc46bUEWVeFs-haEk5UoRZZZB0KpSkuc1Xwmx-Rm2LsJ7XePsTPLtg9NOmmEVHkhVJbrRImBqkMbY0BnNsGvbdgbDubg0AwOTXJojg4NpJAcQjHBzRzD3-p_Uj9Nq3VQ</recordid><startdate>20200301</startdate><enddate>20200301</enddate><creator>Yaegashi, Hajime</creator><creator>Oyamada, Saki</creator><creator>Goto, Shinichi</creator><creator>Yamagishi, Noriko</creator><creator>Isogai, Masamichi</creator><creator>Ito, Tsutae</creator><creator>Yoshikawa, Nobuyuki</creator><general>Springer Japan</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><orcidid>https://orcid.org/0000-0002-4758-9612</orcidid></search><sort><creationdate>20200301</creationdate><title>Simultaneous infection of sweet cherry with eight virus species including a new foveavirus</title><author>Yaegashi, Hajime ; Oyamada, Saki ; Goto, Shinichi ; Yamagishi, Noriko ; Isogai, Masamichi ; Ito, Tsutae ; Yoshikawa, Nobuyuki</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c319t-40a5981e20e8ab46b3a595649faf7a038b8fa21302f3b29244af0255b73edc1d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Agriculture</topic><topic>Biomedical and Life Sciences</topic><topic>Blight</topic><topic>Bud blight</topic><topic>Double-stranded RNA</topic><topic>Fruit trees</topic><topic>Fruits</topic><topic>Gene sequencing</topic><topic>Genomes</topic><topic>Homology</topic><topic>Leafspot</topic><topic>Leaves</topic><topic>Life Sciences</topic><topic>Microbiology</topic><topic>New species</topic><topic>Next-generation sequencing</topic><topic>Nucleotide sequence</topic><topic>Open reading frames</topic><topic>Phylogeny</topic><topic>Plant Pathology</topic><topic>Plant virus diseases</topic><topic>Prunus avium</topic><topic>RNA viruses</topic><topic>Spot</topic><topic>Trees</topic><topic>Viral and Viroid Diseases</topic><topic>Viruses</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yaegashi, Hajime</creatorcontrib><creatorcontrib>Oyamada, Saki</creatorcontrib><creatorcontrib>Goto, Shinichi</creatorcontrib><creatorcontrib>Yamagishi, Noriko</creatorcontrib><creatorcontrib>Isogai, Masamichi</creatorcontrib><creatorcontrib>Ito, Tsutae</creatorcontrib><creatorcontrib>Yoshikawa, Nobuyuki</creatorcontrib><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Journal of general plant pathology : JGPP</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yaegashi, Hajime</au><au>Oyamada, Saki</au><au>Goto, Shinichi</au><au>Yamagishi, Noriko</au><au>Isogai, Masamichi</au><au>Ito, Tsutae</au><au>Yoshikawa, Nobuyuki</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Simultaneous infection of sweet cherry with eight virus species including a new foveavirus</atitle><jtitle>Journal of general plant pathology : JGPP</jtitle><stitle>J Gen Plant Pathol</stitle><date>2020-03-01</date><risdate>2020</risdate><volume>86</volume><issue>2</issue><spage>134</spage><epage>142</epage><pages>134-142</pages><issn>1345-2630</issn><eissn>1610-739X</eissn><abstract>The agent causing bud blight disease (BBD) of sweet cherry (
Prunus avium
), first reported in Yamagata Prefecture, Japan, in the 1990s is graft-transmissible. Previously, little cherry virus 1 (LChV-1), little cherry virus-2 (LChV-2), cherry necrotic rusty mottle virus (CNRMV), cherry green ring mottle virus (CGRMV), and/or cherry virus A (CVA) were all detected from sweet cherry trees with BBD. Here, RNA viruses in sweet cherry trees with BBD were reinvestigated by high-throughput sequencing. Illumina RNA-sequencing of double-stranded RNAs from leaves of diseased cherry trees (S1, S2, S3, and S4) indicated that all trees were infected with at least six known viruses, LChV-1, LChV-2, CNRMV, CGRMV, CVA, prune dwarf virus (PDV), and/or apple chlorotic leaf spot virus. Thus, cherry trees with BBD are all infected with multiple viruses. Moreover, we found an undescribed novel virus of the family
Betaflexiviridae
(tentatively named cherry virus B, ChVB) in tree S3. The complete genome sequence of ChVB comprises 8806 nt, in which five open reading frames were found similar to the viruses of the genus
Foveavirus
. Homology search and phylogenetic analysis indicated that ChVB is a new species of the genus
Foveavirus
.</abstract><cop>Tokyo</cop><pub>Springer Japan</pub><doi>10.1007/s10327-019-00896-0</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0002-4758-9612</orcidid></addata></record> |
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| subjects | Agriculture Biomedical and Life Sciences Blight Bud blight Double-stranded RNA Fruit trees Fruits Gene sequencing Genomes Homology Leafspot Leaves Life Sciences Microbiology New species Next-generation sequencing Nucleotide sequence Open reading frames Phylogeny Plant Pathology Plant virus diseases Prunus avium RNA viruses Spot Trees Viral and Viroid Diseases Viruses |
| title | Simultaneous infection of sweet cherry with eight virus species including a new foveavirus |
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