Phylogeographic Study of Freshwater Fish Channa striata (Bloch) and Channa punctata (Bloch) Construed Using DNA Barcodes Between Three Rivers in Southern Tamil Nadu Region, India
Channa striata and Channa punctata are freshwater fishes with good nutritional and economic importance. The genus Channa had been reported as a species complex till date and hence, the phylogeographic study based on DNA barcodes for two Channa sp. was initiated to substantiate the genetic diversity...
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| Veröffentlicht in: | Proceedings of the Zoological Society 2020-03, Vol.73 (1), p.59-67 |
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| creator | Kuppu, Raghavan Manoharan, Shobana Uthandakalaipandian, Ramesh |
| description | Channa striata
and
Channa punctata
are freshwater fishes with good nutritional and economic importance. The genus Channa had been reported as a species complex till date and hence, the phylogeographic study based on DNA barcodes for two Channa sp. was initiated to substantiate the genetic diversity with respect to their geographic location. In this study, fish samples of
C. striata
and
C. punctata
collected from selected sites in three major rivers (Cauvery, Vaigai and Thamirabarani) flowing through Southern Tamil Nadu region, India. Morphometric and meristic characteristics were recorded. PCR amplification of Cytochrome Oxidase I gene from fishes in each location was sequenced and submitted to Barcode of Life Data System. Three Barcode Index Numbers (BIN’s) were obtained,
C. punctata
from all sites shared a common BIN AAE8814,
C. striata
from Cauvery had a different BIN ACB7973 whereas
C. striata from
Thamirabarani and Vaigai shared an identical BIN AAB2498. The phylogeographic analysis based on Mantel’s test for
C. striata
yielded a positive correlation between the genetic divergence and geographical distance but for
C. punctata
it showed negative correlation. |
| doi_str_mv | 10.1007/s12595-019-00299-1 |
| format | Article |
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and
Channa punctata
are freshwater fishes with good nutritional and economic importance. The genus Channa had been reported as a species complex till date and hence, the phylogeographic study based on DNA barcodes for two Channa sp. was initiated to substantiate the genetic diversity with respect to their geographic location. In this study, fish samples of
C. striata
and
C. punctata
collected from selected sites in three major rivers (Cauvery, Vaigai and Thamirabarani) flowing through Southern Tamil Nadu region, India. Morphometric and meristic characteristics were recorded. PCR amplification of Cytochrome Oxidase I gene from fishes in each location was sequenced and submitted to Barcode of Life Data System. Three Barcode Index Numbers (BIN’s) were obtained,
C. punctata
from all sites shared a common BIN AAE8814,
C. striata
from Cauvery had a different BIN ACB7973 whereas
C. striata from
Thamirabarani and Vaigai shared an identical BIN AAB2498. The phylogeographic analysis based on Mantel’s test for
C. striata
yielded a positive correlation between the genetic divergence and geographical distance but for
C. punctata
it showed negative correlation.</description><identifier>ISSN: 0373-5893</identifier><identifier>EISSN: 0974-6919</identifier><identifier>DOI: 10.1007/s12595-019-00299-1</identifier><language>eng</language><publisher>New Delhi: Springer India</publisher><subject>Animal Anatomy ; Animal Genetics and Genomics ; Biodiversity ; Biomedical and Life Sciences ; Channa punctata ; Channa striata ; Conservation Biology/Ecology ; Cytochrome oxidase I ; Deoxyribonucleic acid ; DNA ; DNA barcoding ; Economic importance ; Genetic diversity ; Histology ; Life Sciences ; Morphology ; Phylogeography ; Research Article ; Rivers ; Zoology</subject><ispartof>Proceedings of the Zoological Society, 2020-03, Vol.73 (1), p.59-67</ispartof><rights>Zoological Society, Kolkata, India 2019</rights><rights>2019© Zoological Society, Kolkata, India 2019</rights><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2341-236da7bbfbf79582440779b90569ab9a6a3e7fe12459d175d957a4b99d0889783</citedby><cites>FETCH-LOGICAL-c2341-236da7bbfbf79582440779b90569ab9a6a3e7fe12459d175d957a4b99d0889783</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s12595-019-00299-1$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s12595-019-00299-1$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>309,310,314,780,784,789,790,23929,23930,25139,27923,27924,41487,42556,51318</link.rule.ids></links><search><creatorcontrib>Kuppu, Raghavan</creatorcontrib><creatorcontrib>Manoharan, Shobana</creatorcontrib><creatorcontrib>Uthandakalaipandian, Ramesh</creatorcontrib><title>Phylogeographic Study of Freshwater Fish Channa striata (Bloch) and Channa punctata (Bloch) Construed Using DNA Barcodes Between Three Rivers in Southern Tamil Nadu Region, India</title><title>Proceedings of the Zoological Society</title><addtitle>Proc Zool Soc</addtitle><description>Channa striata
and
Channa punctata
are freshwater fishes with good nutritional and economic importance. The genus Channa had been reported as a species complex till date and hence, the phylogeographic study based on DNA barcodes for two Channa sp. was initiated to substantiate the genetic diversity with respect to their geographic location. In this study, fish samples of
C. striata
and
C. punctata
collected from selected sites in three major rivers (Cauvery, Vaigai and Thamirabarani) flowing through Southern Tamil Nadu region, India. Morphometric and meristic characteristics were recorded. PCR amplification of Cytochrome Oxidase I gene from fishes in each location was sequenced and submitted to Barcode of Life Data System. Three Barcode Index Numbers (BIN’s) were obtained,
C. punctata
from all sites shared a common BIN AAE8814,
C. striata
from Cauvery had a different BIN ACB7973 whereas
C. striata from
Thamirabarani and Vaigai shared an identical BIN AAB2498. The phylogeographic analysis based on Mantel’s test for
C. striata
yielded a positive correlation between the genetic divergence and geographical distance but for
C. punctata
it showed negative correlation.</description><subject>Animal Anatomy</subject><subject>Animal Genetics and Genomics</subject><subject>Biodiversity</subject><subject>Biomedical and Life Sciences</subject><subject>Channa punctata</subject><subject>Channa striata</subject><subject>Conservation Biology/Ecology</subject><subject>Cytochrome oxidase I</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA barcoding</subject><subject>Economic importance</subject><subject>Genetic diversity</subject><subject>Histology</subject><subject>Life Sciences</subject><subject>Morphology</subject><subject>Phylogeography</subject><subject>Research Article</subject><subject>Rivers</subject><subject>Zoology</subject><issn>0373-5893</issn><issn>0974-6919</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp9kUtu1EAQhi0EEiFwAVYlsQEJQz_cbvcyM2EgUhRQHutW2V22O5p0D9020dyGO3ADToZhQLBiVSX931-1-IriOWdvOGP6beZCGVUybkrGhDElf1AcMaOrsjbcPFx2qWWpGiMfF09yvmWsrlijjopvn8b9Ng4Uh4S70XdwNc1uD7H__nWTKI_3OFGCjc8jrEcMASFPyeOE8HK1jd34CjC4P9FuDt30b7aOYcFncnCTfRjg9OIEVpi66CjDiqZ7ogDXYyKCS_-FUgYf4CrO00hpCfDOb-EC3QyXNPgYXsNZcB6fFo963GZ69nseFzebd9frD-X5x_dn65PzshOy4qWQtUPdtn3ba6MaUVVMa9MapmqDrcEaJemeuKiUcVwrZ5TGqjXGsaYxupHHxYvD3V2Kn2fKk72NcwrLSyukUpI3jRQLJQ5Ul2LOiXq7S_4O095yZn_KsQc5dpFjf8mxfCnJQykvcBgo_T39n9YPQMmTSA</recordid><startdate>20200301</startdate><enddate>20200301</enddate><creator>Kuppu, Raghavan</creator><creator>Manoharan, Shobana</creator><creator>Uthandakalaipandian, Ramesh</creator><general>Springer India</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope></search><sort><creationdate>20200301</creationdate><title>Phylogeographic Study of Freshwater Fish Channa striata (Bloch) and Channa punctata (Bloch) Construed Using DNA Barcodes Between Three Rivers in Southern Tamil Nadu Region, India</title><author>Kuppu, Raghavan ; Manoharan, Shobana ; Uthandakalaipandian, Ramesh</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2341-236da7bbfbf79582440779b90569ab9a6a3e7fe12459d175d957a4b99d0889783</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Animal Anatomy</topic><topic>Animal Genetics and Genomics</topic><topic>Biodiversity</topic><topic>Biomedical and Life Sciences</topic><topic>Channa punctata</topic><topic>Channa striata</topic><topic>Conservation Biology/Ecology</topic><topic>Cytochrome oxidase I</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA barcoding</topic><topic>Economic importance</topic><topic>Genetic diversity</topic><topic>Histology</topic><topic>Life Sciences</topic><topic>Morphology</topic><topic>Phylogeography</topic><topic>Research Article</topic><topic>Rivers</topic><topic>Zoology</topic><toplevel>online_resources</toplevel><creatorcontrib>Kuppu, Raghavan</creatorcontrib><creatorcontrib>Manoharan, Shobana</creatorcontrib><creatorcontrib>Uthandakalaipandian, Ramesh</creatorcontrib><collection>CrossRef</collection><jtitle>Proceedings of the Zoological Society</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kuppu, Raghavan</au><au>Manoharan, Shobana</au><au>Uthandakalaipandian, Ramesh</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogeographic Study of Freshwater Fish Channa striata (Bloch) and Channa punctata (Bloch) Construed Using DNA Barcodes Between Three Rivers in Southern Tamil Nadu Region, India</atitle><jtitle>Proceedings of the Zoological Society</jtitle><stitle>Proc Zool Soc</stitle><date>2020-03-01</date><risdate>2020</risdate><volume>73</volume><issue>1</issue><spage>59</spage><epage>67</epage><pages>59-67</pages><issn>0373-5893</issn><eissn>0974-6919</eissn><abstract>Channa striata
and
Channa punctata
are freshwater fishes with good nutritional and economic importance. The genus Channa had been reported as a species complex till date and hence, the phylogeographic study based on DNA barcodes for two Channa sp. was initiated to substantiate the genetic diversity with respect to their geographic location. In this study, fish samples of
C. striata
and
C. punctata
collected from selected sites in three major rivers (Cauvery, Vaigai and Thamirabarani) flowing through Southern Tamil Nadu region, India. Morphometric and meristic characteristics were recorded. PCR amplification of Cytochrome Oxidase I gene from fishes in each location was sequenced and submitted to Barcode of Life Data System. Three Barcode Index Numbers (BIN’s) were obtained,
C. punctata
from all sites shared a common BIN AAE8814,
C. striata
from Cauvery had a different BIN ACB7973 whereas
C. striata from
Thamirabarani and Vaigai shared an identical BIN AAB2498. The phylogeographic analysis based on Mantel’s test for
C. striata
yielded a positive correlation between the genetic divergence and geographical distance but for
C. punctata
it showed negative correlation.</abstract><cop>New Delhi</cop><pub>Springer India</pub><doi>10.1007/s12595-019-00299-1</doi><tpages>9</tpages></addata></record> |
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| ispartof | Proceedings of the Zoological Society, 2020-03, Vol.73 (1), p.59-67 |
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| subjects | Animal Anatomy Animal Genetics and Genomics Biodiversity Biomedical and Life Sciences Channa punctata Channa striata Conservation Biology/Ecology Cytochrome oxidase I Deoxyribonucleic acid DNA DNA barcoding Economic importance Genetic diversity Histology Life Sciences Morphology Phylogeography Research Article Rivers Zoology |
| title | Phylogeographic Study of Freshwater Fish Channa striata (Bloch) and Channa punctata (Bloch) Construed Using DNA Barcodes Between Three Rivers in Southern Tamil Nadu Region, India |
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