Next-generation sequencing yields the mitochondrial genome of black-streaked Scimitar Babbler Pomatorhinus gravivox (Passeriformes: Timaliidae)
In this study, we first sequenced and described the complete mitochondrial genome of Pomatorhinus gravivox. The whole genome of P. gravivox was 16,963 bp in length and contained 13 protein-coding genes, 22 transfer RNA genes, two ribosome RNA genes, and one non-coding control region. The overall bas...
Gespeichert in:
| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2019-01, Vol.4 (1), p.998-999 |
|---|---|
| Hauptverfasser: | , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 999 |
|---|---|
| container_issue | 1 |
| container_start_page | 998 |
| container_title | Mitochondrial DNA. Part B. Resources |
| container_volume | 4 |
| creator | Duan, Yubao Li, Yuan Luo, Xu |
| description | In this study, we first sequenced and described the complete mitochondrial genome of Pomatorhinus gravivox. The whole genome of P. gravivox was 16,963 bp in length and contained 13 protein-coding genes, 22 transfer RNA genes, two ribosome RNA genes, and one non-coding control region. The overall base composition of the mitochondrial DNA was 29.10% for A, 23.12% for T, 14.56% for G, and 33.22% for C, with a GC content of 47.78%. A phylogenetic tree confirmed that P. gravivox was sister to P. ruficollis and belonged to family Timaliidae. This information will be useful in the current understanding of the phylogeny and evolution of Timaliidae. |
| doi_str_mv | 10.1080/23802359.2019.1579062 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_journals_2352040624</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_0cf6eb17408448efad9ca934ec780e8e</doaj_id><sourcerecordid>2352040624</sourcerecordid><originalsourceid>FETCH-LOGICAL-c451t-a2f56c570216d52ea8c516a4df44f010b27b8183918d105db15c7d831aaaaee23</originalsourceid><addsrcrecordid>eNp9kcFu1DAQhiMEElXpIyBZ4gKHLLZjJw4noCq0UgWVKGdrYo93vU3iYntL9yl4ZZxuQZzwxdb4n39G_1dVLxldMaroW94oyhvZrzhl_YrJrqctf1IdLfV6-Xj6z_t5dZLSllLK2qbr-u6o-vUF73O9xhkjZB9mkvDHDmfj5zXZexxtInmDZPI5mE2YbfQwkiIPE5LgyDCCualTjgg3aMk344sSIvkIwzBiJFdhghzixs-7RNYR7vxduCevryAljN6FOGF6R679BKP3FvDNi-qZgzHhyeN9XH3_dHZ9el5ffv18cfrhsjZCslwDd7I1sqOctVZyBGUka0FYJ4SjjA68GxRTTc-UZVTagUnTWdUwKAeRN8fVxcHXBtjq21g2iHsdwOuHQohrDTF7M6KmxrU4sE5QJYRCB7Y30DcCTacoKixerw5etzGU8FLW27CLc1lfl9A5FYWIKCp5UJkYUoro_k5lVC8o9R-UekGpH1GWvveHPj8vecHPEEerM-zHEF2Egirp5v8WvwEPdqfT</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2352040624</pqid></control><display><type>article</type><title>Next-generation sequencing yields the mitochondrial genome of black-streaked Scimitar Babbler Pomatorhinus gravivox (Passeriformes: Timaliidae)</title><source>Electronic Journals Library</source><source>Taylor & Francis Open Access</source><source>DOAJ Directory of Open Access Journals</source><source>PubMed Central</source><creator>Duan, Yubao ; Li, Yuan ; Luo, Xu</creator><creatorcontrib>Duan, Yubao ; Li, Yuan ; Luo, Xu</creatorcontrib><description>In this study, we first sequenced and described the complete mitochondrial genome of Pomatorhinus gravivox. The whole genome of P. gravivox was 16,963 bp in length and contained 13 protein-coding genes, 22 transfer RNA genes, two ribosome RNA genes, and one non-coding control region. The overall base composition of the mitochondrial DNA was 29.10% for A, 23.12% for T, 14.56% for G, and 33.22% for C, with a GC content of 47.78%. A phylogenetic tree confirmed that P. gravivox was sister to P. ruficollis and belonged to family Timaliidae. This information will be useful in the current understanding of the phylogeny and evolution of Timaliidae.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2019.1579062</identifier><language>eng</language><publisher>Abingdon: Taylor & Francis</publisher><subject>Base composition ; Genomes ; Mitochondrial DNA ; mitogenome ; Next-generation sequencing ; Non-coding RNA ; Phylogeny ; Pomatorhinus ; Pomatorhinus gravivox ; Ribonucleic acid ; RNA ; Timaliidae ; Transfer RNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2019-01, Vol.4 (1), p.998-999</ispartof><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2019</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c451t-a2f56c570216d52ea8c516a4df44f010b27b8183918d105db15c7d831aaaaee23</citedby><cites>FETCH-LOGICAL-c451t-a2f56c570216d52ea8c516a4df44f010b27b8183918d105db15c7d831aaaaee23</cites><orcidid>0000-0001-7260-029X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.tandfonline.com/doi/pdf/10.1080/23802359.2019.1579062$$EPDF$$P50$$Ginformaworld$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.tandfonline.com/doi/full/10.1080/23802359.2019.1579062$$EHTML$$P50$$Ginformaworld$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,864,2102,27502,27924,27925,59143,59144</link.rule.ids></links><search><creatorcontrib>Duan, Yubao</creatorcontrib><creatorcontrib>Li, Yuan</creatorcontrib><creatorcontrib>Luo, Xu</creatorcontrib><title>Next-generation sequencing yields the mitochondrial genome of black-streaked Scimitar Babbler Pomatorhinus gravivox (Passeriformes: Timaliidae)</title><title>Mitochondrial DNA. Part B. Resources</title><description>In this study, we first sequenced and described the complete mitochondrial genome of Pomatorhinus gravivox. The whole genome of P. gravivox was 16,963 bp in length and contained 13 protein-coding genes, 22 transfer RNA genes, two ribosome RNA genes, and one non-coding control region. The overall base composition of the mitochondrial DNA was 29.10% for A, 23.12% for T, 14.56% for G, and 33.22% for C, with a GC content of 47.78%. A phylogenetic tree confirmed that P. gravivox was sister to P. ruficollis and belonged to family Timaliidae. This information will be useful in the current understanding of the phylogeny and evolution of Timaliidae.</description><subject>Base composition</subject><subject>Genomes</subject><subject>Mitochondrial DNA</subject><subject>mitogenome</subject><subject>Next-generation sequencing</subject><subject>Non-coding RNA</subject><subject>Phylogeny</subject><subject>Pomatorhinus</subject><subject>Pomatorhinus gravivox</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>Timaliidae</subject><subject>Transfer RNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kcFu1DAQhiMEElXpIyBZ4gKHLLZjJw4noCq0UgWVKGdrYo93vU3iYntL9yl4ZZxuQZzwxdb4n39G_1dVLxldMaroW94oyhvZrzhl_YrJrqctf1IdLfV6-Xj6z_t5dZLSllLK2qbr-u6o-vUF73O9xhkjZB9mkvDHDmfj5zXZexxtInmDZPI5mE2YbfQwkiIPE5LgyDCCualTjgg3aMk344sSIvkIwzBiJFdhghzixs-7RNYR7vxduCevryAljN6FOGF6R679BKP3FvDNi-qZgzHhyeN9XH3_dHZ9el5ffv18cfrhsjZCslwDd7I1sqOctVZyBGUka0FYJ4SjjA68GxRTTc-UZVTagUnTWdUwKAeRN8fVxcHXBtjq21g2iHsdwOuHQohrDTF7M6KmxrU4sE5QJYRCB7Y30DcCTacoKixerw5etzGU8FLW27CLc1lfl9A5FYWIKCp5UJkYUoro_k5lVC8o9R-UekGpH1GWvveHPj8vecHPEEerM-zHEF2Egirp5v8WvwEPdqfT</recordid><startdate>20190102</startdate><enddate>20190102</enddate><creator>Duan, Yubao</creator><creator>Li, Yuan</creator><creator>Luo, Xu</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0001-7260-029X</orcidid></search><sort><creationdate>20190102</creationdate><title>Next-generation sequencing yields the mitochondrial genome of black-streaked Scimitar Babbler Pomatorhinus gravivox (Passeriformes: Timaliidae)</title><author>Duan, Yubao ; Li, Yuan ; Luo, Xu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c451t-a2f56c570216d52ea8c516a4df44f010b27b8183918d105db15c7d831aaaaee23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Base composition</topic><topic>Genomes</topic><topic>Mitochondrial DNA</topic><topic>mitogenome</topic><topic>Next-generation sequencing</topic><topic>Non-coding RNA</topic><topic>Phylogeny</topic><topic>Pomatorhinus</topic><topic>Pomatorhinus gravivox</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>Timaliidae</topic><topic>Transfer RNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Duan, Yubao</creatorcontrib><creatorcontrib>Li, Yuan</creatorcontrib><creatorcontrib>Luo, Xu</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>ProQuest research library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database (Proquest) (PQ_SDU_P3)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Duan, Yubao</au><au>Li, Yuan</au><au>Luo, Xu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Next-generation sequencing yields the mitochondrial genome of black-streaked Scimitar Babbler Pomatorhinus gravivox (Passeriformes: Timaliidae)</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><date>2019-01-02</date><risdate>2019</risdate><volume>4</volume><issue>1</issue><spage>998</spage><epage>999</epage><pages>998-999</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>In this study, we first sequenced and described the complete mitochondrial genome of Pomatorhinus gravivox. The whole genome of P. gravivox was 16,963 bp in length and contained 13 protein-coding genes, 22 transfer RNA genes, two ribosome RNA genes, and one non-coding control region. The overall base composition of the mitochondrial DNA was 29.10% for A, 23.12% for T, 14.56% for G, and 33.22% for C, with a GC content of 47.78%. A phylogenetic tree confirmed that P. gravivox was sister to P. ruficollis and belonged to family Timaliidae. This information will be useful in the current understanding of the phylogeny and evolution of Timaliidae.</abstract><cop>Abingdon</cop><pub>Taylor & Francis</pub><doi>10.1080/23802359.2019.1579062</doi><tpages>2</tpages><orcidid>https://orcid.org/0000-0001-7260-029X</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 2380-2359 |
| ispartof | Mitochondrial DNA. Part B. Resources, 2019-01, Vol.4 (1), p.998-999 |
| issn | 2380-2359 2380-2359 |
| language | eng |
| recordid | cdi_proquest_journals_2352040624 |
| source | Electronic Journals Library; Taylor & Francis Open Access; DOAJ Directory of Open Access Journals; PubMed Central |
| subjects | Base composition Genomes Mitochondrial DNA mitogenome Next-generation sequencing Non-coding RNA Phylogeny Pomatorhinus Pomatorhinus gravivox Ribonucleic acid RNA Timaliidae Transfer RNA |
| title | Next-generation sequencing yields the mitochondrial genome of black-streaked Scimitar Babbler Pomatorhinus gravivox (Passeriformes: Timaliidae) |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-01T08%3A35%3A25IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Next-generation%20sequencing%20yields%20the%20mitochondrial%20genome%20of%20black-streaked%20Scimitar%20Babbler%20Pomatorhinus%20gravivox%20(Passeriformes:%20Timaliidae)&rft.jtitle=Mitochondrial%20DNA.%20Part%20B.%20Resources&rft.au=Duan,%20Yubao&rft.date=2019-01-02&rft.volume=4&rft.issue=1&rft.spage=998&rft.epage=999&rft.pages=998-999&rft.issn=2380-2359&rft.eissn=2380-2359&rft_id=info:doi/10.1080/23802359.2019.1579062&rft_dat=%3Cproquest_cross%3E2352040624%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2352040624&rft_id=info:pmid/&rft_doaj_id=oai_doaj_org_article_0cf6eb17408448efad9ca934ec780e8e&rfr_iscdi=true |