Identification and analysis of the complete mitochondrial genome of Thaumetopoea pityocampa (Lepidoptera: Notodontidae)
The mitochondrial genome (mitogenome) provides important information for phylogenetic analysis and understanding evolutionary origins. Thaumetopoea pityocampa is a forest pest that harms nearly all cedar and pine species. In this study, the T. pityocampa mitochondrial genome was sequenced, assembled...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2019-07, Vol.4 (2), p.3654-3656 |
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| creator | Wu, Kai Yang, Jinge Ni, Yuyang Liu, Qiuning |
| description | The mitochondrial genome (mitogenome) provides important information for phylogenetic analysis and understanding evolutionary origins. Thaumetopoea pityocampa is a forest pest that harms nearly all cedar and pine species. In this study, the T. pityocampa mitochondrial genome was sequenced, assembled, and annotated. The sequence length of the genome was found to be 15,737 bp, containing 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes, and an A + T-rich region compared with the genomes of other lepidopterans. The overall nucleotide composition is: 37.3% T, 40.5% A, 14.6% C, and 7.6% G, demonstrating an AT bias (A + T: 77.8%). Our phylogenetic tree analysis results showed that T. pityocampa and Ochrogaster lunifer were the most similar species, with the closest evolutionary distance. The mitogenome sequence determined in this study will contribute to improved understanding of Notodontidae evolution. |
| doi_str_mv | 10.1080/23802359.2019.1678422 |
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Thaumetopoea pityocampa is a forest pest that harms nearly all cedar and pine species. In this study, the T. pityocampa mitochondrial genome was sequenced, assembled, and annotated. The sequence length of the genome was found to be 15,737 bp, containing 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes, and an A + T-rich region compared with the genomes of other lepidopterans. The overall nucleotide composition is: 37.3% T, 40.5% A, 14.6% C, and 7.6% G, demonstrating an AT bias (A + T: 77.8%). Our phylogenetic tree analysis results showed that T. pityocampa and Ochrogaster lunifer were the most similar species, with the closest evolutionary distance. The mitogenome sequence determined in this study will contribute to improved understanding of Notodontidae evolution.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2019.1678422</identifier><identifier>PMID: 33366128</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Evolution ; Genomes ; Mitochondria ; mitochondrial genome ; Mitogenome Announcement ; Notodontidae ; Nucleotide sequence ; phylogenetic analysis ; Phylogenetics ; Phylogeny ; rRNA ; Thaumetopoea pityocampa ; tRNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2019-07, Vol.4 (2), p.3654-3656</ispartof><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2019</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2019 The Author(s). 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Published by Informa UK Limited, trading as Taylor & Francis Group. 2019 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c562t-56a62236f9dc5645acc7d8b64a2e753acfec2894ebe32037ffbc8f7a790e10783</citedby><cites>FETCH-LOGICAL-c562t-56a62236f9dc5645acc7d8b64a2e753acfec2894ebe32037ffbc8f7a790e10783</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707520/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707520/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,315,728,781,785,865,886,2103,27507,27929,27930,53796,53798,59148,59149</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33366128$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wu, Kai</creatorcontrib><creatorcontrib>Yang, Jinge</creatorcontrib><creatorcontrib>Ni, Yuyang</creatorcontrib><creatorcontrib>Liu, Qiuning</creatorcontrib><title>Identification and analysis of the complete mitochondrial genome of Thaumetopoea pityocampa (Lepidoptera: Notodontidae)</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>The mitochondrial genome (mitogenome) provides important information for phylogenetic analysis and understanding evolutionary origins. Thaumetopoea pityocampa is a forest pest that harms nearly all cedar and pine species. In this study, the T. pityocampa mitochondrial genome was sequenced, assembled, and annotated. The sequence length of the genome was found to be 15,737 bp, containing 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes, and an A + T-rich region compared with the genomes of other lepidopterans. The overall nucleotide composition is: 37.3% T, 40.5% A, 14.6% C, and 7.6% G, demonstrating an AT bias (A + T: 77.8%). Our phylogenetic tree analysis results showed that T. pityocampa and Ochrogaster lunifer were the most similar species, with the closest evolutionary distance. The mitogenome sequence determined in this study will contribute to improved understanding of Notodontidae evolution.</description><subject>Evolution</subject><subject>Genomes</subject><subject>Mitochondria</subject><subject>mitochondrial genome</subject><subject>Mitogenome Announcement</subject><subject>Notodontidae</subject><subject>Nucleotide sequence</subject><subject>phylogenetic analysis</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>rRNA</subject><subject>Thaumetopoea pityocampa</subject><subject>tRNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kk1v1DAQhiMEotXSnwCKxKUcdnHsxE44oKKKj5UquJSzNbHHu14lmeB4qfbf47DbquXAwbI18_id8fjNstcFWxWsZu-5qBkXVbPirGhWhVR1yfmz7HyOL-fE80fns-ximnaMsUIKpRr1MjsTQkhZ8Po8u1tbHKJ33kD0NOQw2LSgO0x-ysnlcYu5oX7sMGLe-0hmS4MNHrp8gwP1OEO3W9j3GGkkhHz08UAG-hHyyxscvaUxYoAP-XeKZCkVs4DvXmUvHHQTXpz2Rfbzy-fb62_Lmx9f19efbpamkjwuKwmScyFdY1OgrMAYZetWlsBRVQKMQ8PrpsQWBWdCOdea2ilQDcOCqVossvVR1xLs9Bh8D-GgCbz-G6Cw0RCiNx1qUIWsRCslOl7yRoKzrjbY8sayep73Ivt41Br3bY_WpMEF6J6IPs0Mfqs39FsrxVSV2ltklyeBQL_2OEXd-8lg18GAtJ80L5UoC8W5Sujbf9Ad7UP6mESJpFUyyapEVUfKBJqmgO6hmYLp2Sn63il6doo-OSXde_P4JQ-37n2RgKsj4AdHoYc7Cp3VEQ4dBRdgMH7S4v81_gD3ss9X</recordid><startdate>20190703</startdate><enddate>20190703</enddate><creator>Wu, Kai</creator><creator>Yang, Jinge</creator><creator>Ni, Yuyang</creator><creator>Liu, Qiuning</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20190703</creationdate><title>Identification and analysis of the complete mitochondrial genome of Thaumetopoea pityocampa (Lepidoptera: Notodontidae)</title><author>Wu, Kai ; Yang, Jinge ; Ni, Yuyang ; Liu, Qiuning</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c562t-56a62236f9dc5645acc7d8b64a2e753acfec2894ebe32037ffbc8f7a790e10783</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Evolution</topic><topic>Genomes</topic><topic>Mitochondria</topic><topic>mitochondrial genome</topic><topic>Mitogenome Announcement</topic><topic>Notodontidae</topic><topic>Nucleotide sequence</topic><topic>phylogenetic analysis</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>rRNA</topic><topic>Thaumetopoea pityocampa</topic><topic>tRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wu, Kai</creatorcontrib><creatorcontrib>Yang, Jinge</creatorcontrib><creatorcontrib>Ni, Yuyang</creatorcontrib><creatorcontrib>Liu, Qiuning</creatorcontrib><collection>Access via Taylor & Francis (Open Access Collection)</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. 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In this study, the T. pityocampa mitochondrial genome was sequenced, assembled, and annotated. The sequence length of the genome was found to be 15,737 bp, containing 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes, and an A + T-rich region compared with the genomes of other lepidopterans. The overall nucleotide composition is: 37.3% T, 40.5% A, 14.6% C, and 7.6% G, demonstrating an AT bias (A + T: 77.8%). Our phylogenetic tree analysis results showed that T. pityocampa and Ochrogaster lunifer were the most similar species, with the closest evolutionary distance. The mitogenome sequence determined in this study will contribute to improved understanding of Notodontidae evolution.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>33366128</pmid><doi>10.1080/23802359.2019.1678422</doi><tpages>3</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Evolution Genomes Mitochondria mitochondrial genome Mitogenome Announcement Notodontidae Nucleotide sequence phylogenetic analysis Phylogenetics Phylogeny rRNA Thaumetopoea pityocampa tRNA |
| title | Identification and analysis of the complete mitochondrial genome of Thaumetopoea pityocampa (Lepidoptera: Notodontidae) |
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