Complete chloroplast genome of Cerasus kumanoensis (Rosaceae), a wild flowering cherry endemic to Kii Peninsula, Japan
Cerasus kumanoensis is a recently described wild cherry species from the Kii Peninsula, Japan. Here we determined the first complete chloroplast genome of C. kumanoensis using genome skimming approach. The cp genome was 157,898 bp long, with a large single-copy region (LSC) of 85,926 bp and a small...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2019-07, Vol.4 (2), p.3010-3011 |
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| creator | Sun, Zhong-Shuai Yi, Xian-Gui Liu, Xin-Hong Katsuki, Toshio |
| description | Cerasus kumanoensis is a recently described wild cherry species from the Kii Peninsula, Japan. Here we determined the first complete chloroplast genome of C. kumanoensis using genome skimming approach. The cp genome was 157,898 bp long, with a large single-copy region (LSC) of 85,926 bp and a small single-copy region (SSC) of 19,070 bp separated by a pair of inverted repeats (IRs) of 26,451 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. Besides, we reconstructed the phylogeny of Prunus using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that C. kumanoensis is close related with a group including Prunus takesimensis and P. speciosa. |
| doi_str_mv | 10.1080/23802359.2019.1666052 |
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Here we determined the first complete chloroplast genome of C. kumanoensis using genome skimming approach. The cp genome was 157,898 bp long, with a large single-copy region (LSC) of 85,926 bp and a small single-copy region (SSC) of 19,070 bp separated by a pair of inverted repeats (IRs) of 26,451 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. Besides, we reconstructed the phylogeny of Prunus using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that C. kumanoensis is close related with a group including Prunus takesimensis and P. speciosa.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2019.1666052</identifier><identifier>PMID: 33365832</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Cerasus kumanoensis;·flowering cherries ; chloroplast genome ; Chloroplasts ; Flowering ; Genomes ; Mitogenome Announcement ; phylogenomics ; Phylogeny ; Prunus ; rRNA ; tRNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2019-07, Vol.4 (2), p.3010-3011</ispartof><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2019</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 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The phylogenetic analysis indicated that C. kumanoensis is close related with a group including Prunus takesimensis and P. speciosa.</description><subject>Cerasus kumanoensis;·flowering cherries</subject><subject>chloroplast genome</subject><subject>Chloroplasts</subject><subject>Flowering</subject><subject>Genomes</subject><subject>Mitogenome Announcement</subject><subject>phylogenomics</subject><subject>Phylogeny</subject><subject>Prunus</subject><subject>rRNA</subject><subject>tRNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kl1v0zAUhiMEYlPZTwBZ4mZIa_FH7Dg3CFTxMZgEQnBtnTonnYtjFztZ1X9PQrtp44IrWz7Pefz1FsVzRheMavqaC025kPWCU1YvmFKKSv6oOJ3W51Ph8b35SXGW84ZSypSoqrp6WpwIIZTUgp8WN8vYbT32SOy1jyluPeSerDHEDklsyRIT5CGTX0MHIWLILpPz7zGDRcBXFwTIzvmGtD7uMLmwHjWY0p5gaLBzlvSRfHGOfMPgQh48XJDPsIXwrHjSgs94dhxnxc8P738sP82vvn68XL67mlupeD-vK9WUNS9VKxkDlKoUTGmNtFxR1ta24YyyRpYcNdVcSkVrUJJjQ6mwtBZiVlwevE2Ejdkm10HamwjO_F2IaW0g9c56NBoAG2153SIr-UqsKmhoJXH0K1WyyfXm4NoOqw4bi6FP4B9IH1aCuzbreGOqiqpaq1FwfhSk-HvA3JvOZYveQ8A4ZMPLSpS0EnRCX_6DbuKQwvhUZvxSTkWtR3hWyANlU8w5YXt3GEbNFBRzGxQzBcUcgzL2vbh_k7uu21iMwNsD4EIbUwe7mHxjetiPEWkTBOuyEf_f4w8F6Muh</recordid><startdate>20190703</startdate><enddate>20190703</enddate><creator>Sun, Zhong-Shuai</creator><creator>Yi, Xian-Gui</creator><creator>Liu, Xin-Hong</creator><creator>Katsuki, Toshio</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20190703</creationdate><title>Complete chloroplast genome of Cerasus kumanoensis (Rosaceae), a wild flowering cherry endemic to Kii Peninsula, Japan</title><author>Sun, Zhong-Shuai ; Yi, Xian-Gui ; Liu, Xin-Hong ; Katsuki, Toshio</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c562t-976d49246f511ae56431688e04b01f9cd2101d542e808255609a652ed003c0933</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Cerasus kumanoensis;·flowering cherries</topic><topic>chloroplast genome</topic><topic>Chloroplasts</topic><topic>Flowering</topic><topic>Genomes</topic><topic>Mitogenome Announcement</topic><topic>phylogenomics</topic><topic>Phylogeny</topic><topic>Prunus</topic><topic>rRNA</topic><topic>tRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sun, Zhong-Shuai</creatorcontrib><creatorcontrib>Yi, Xian-Gui</creatorcontrib><creatorcontrib>Liu, Xin-Hong</creatorcontrib><creatorcontrib>Katsuki, Toshio</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Access via ProQuest (Open Access)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sun, Zhong-Shuai</au><au>Yi, Xian-Gui</au><au>Liu, Xin-Hong</au><au>Katsuki, Toshio</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete chloroplast genome of Cerasus kumanoensis (Rosaceae), a wild flowering cherry endemic to Kii Peninsula, Japan</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2019-07-03</date><risdate>2019</risdate><volume>4</volume><issue>2</issue><spage>3010</spage><epage>3011</epage><pages>3010-3011</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>Cerasus kumanoensis is a recently described wild cherry species from the Kii Peninsula, Japan. Here we determined the first complete chloroplast genome of C. kumanoensis using genome skimming approach. 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| subjects | Cerasus kumanoensis ·flowering cherries chloroplast genome Chloroplasts Flowering Genomes Mitogenome Announcement phylogenomics Phylogeny Prunus rRNA tRNA |
| title | Complete chloroplast genome of Cerasus kumanoensis (Rosaceae), a wild flowering cherry endemic to Kii Peninsula, Japan |
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