The complete chloroplast genome sequence of an invasive plant Lonicera Maackii (Caprifoliaceae)
Lonicera maackii is native to Northeastern Asia and considered as an invasive plant in North America. In this study, the complete chloroplast genome of L. maackii was obtained by high-throughput next-generation sequencing technology. The chloroplast genome was 155,318 bp in length and had typical qu...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2019-01, Vol.4 (1), p.1008-1009 |
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| creator | Kang, Shin-Jae Park, Jee Young Jang, Woojong Koo, Hyun Jo Lee, Dong Young Kim, Mi Song Han, Sang Il Sung, Sang Hyun Yang, Tae-Jin |
| description | Lonicera maackii is native to Northeastern Asia and considered as an invasive plant in North America. In this study, the complete chloroplast genome of L. maackii was obtained by high-throughput next-generation sequencing technology. The chloroplast genome was 155,318 bp in length and had typical quadripartite structures comprising a large single copy, a small single copy, and a pair of inverted repeat regions of 89,202, 18,680, and 23,718 bp long, respectively. The genome contained 80 protein-coding genes, four rRNA genes and 30 tRNA genes. Phylogenetic tree revealed that L. maackii was grouped with other Caprifoliaceae species, L. japonica, Patrinia saniculifolia, and Kolkwitzia amabilis. |
| doi_str_mv | 10.1080/23802359.2018.1524722 |
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In this study, the complete chloroplast genome of L. maackii was obtained by high-throughput next-generation sequencing technology. The chloroplast genome was 155,318 bp in length and had typical quadripartite structures comprising a large single copy, a small single copy, and a pair of inverted repeat regions of 89,202, 18,680, and 23,718 bp long, respectively. The genome contained 80 protein-coding genes, four rRNA genes and 30 tRNA genes. Phylogenetic tree revealed that L. maackii was grouped with other Caprifoliaceae species, L. japonica, Patrinia saniculifolia, and Kolkwitzia amabilis.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2018.1524722</identifier><language>eng</language><publisher>Abingdon: Taylor & Francis</publisher><subject>Amur honeysuckle ; Caprifoliaceae ; chloroplast genome ; Chloroplasts ; genome sequence ; Genomes ; Invasive plants ; Inverted repeat ; Lonicera maackii ; Next-generation sequencing ; Nucleotide sequence ; Phylogeny ; rRNA ; tRNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2019-01, Vol.4 (1), p.1008-1009</ispartof><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2019</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). 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Phylogenetic tree revealed that L. maackii was grouped with other Caprifoliaceae species, L. japonica, Patrinia saniculifolia, and Kolkwitzia amabilis.</description><subject>Amur honeysuckle</subject><subject>Caprifoliaceae</subject><subject>chloroplast genome</subject><subject>Chloroplasts</subject><subject>genome sequence</subject><subject>Genomes</subject><subject>Invasive plants</subject><subject>Inverted repeat</subject><subject>Lonicera maackii</subject><subject>Next-generation sequencing</subject><subject>Nucleotide sequence</subject><subject>Phylogeny</subject><subject>rRNA</subject><subject>tRNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9UU1vEzEQXSGQqNr-BCRLXNpDgj92_XEDRRQqBXEpZ2tij1unGzvY21b593hJqXriNKOZN2_ezOu6D4wuGdX0ExeacjGYJadML9nAe8X5m-5kri_mxttX-fvuvNYtpZRJoZRRJ529uUPi8m4_4tSSuzGXvB-hTuQWU94hqfj7AZNDkgOBRGJ6hBofkTRQmsg6p-iwAPkB4O5jJBcr2JcY8hjBIeDlWfcuwFjx_Dmedr-uvt6svi_WP79dr76sF64f2LSQqPseDBodDEjkaDZeogclFHAKQTBB-cAYaC-BGy57zXWvKBpJEQSK0-76yOszbG2TsINysBmi_VvI5dZCmaIb0Uo1eHQbHowIvadyQzea9xTVILzzeub6eOTal9yOr5Pd5oeSmnzbnsipaEjTUMMR5UqutWB42cqona2x_6yxszX22Zo29_k4F1PIZQdPuYzeTnBorw8FkovViv9T_AFAOZR5</recordid><startdate>20190102</startdate><enddate>20190102</enddate><creator>Kang, Shin-Jae</creator><creator>Park, Jee Young</creator><creator>Jang, Woojong</creator><creator>Koo, Hyun Jo</creator><creator>Lee, Dong Young</creator><creator>Kim, Mi Song</creator><creator>Han, Sang Il</creator><creator>Sung, Sang Hyun</creator><creator>Yang, Tae-Jin</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>DOA</scope></search><sort><creationdate>20190102</creationdate><title>The complete chloroplast genome sequence of an invasive plant Lonicera Maackii (Caprifoliaceae)</title><author>Kang, Shin-Jae ; 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| subjects | Amur honeysuckle Caprifoliaceae chloroplast genome Chloroplasts genome sequence Genomes Invasive plants Inverted repeat Lonicera maackii Next-generation sequencing Nucleotide sequence Phylogeny rRNA tRNA |
| title | The complete chloroplast genome sequence of an invasive plant Lonicera Maackii (Caprifoliaceae) |
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