Solution Structure and Dynamics of the Small Protein HVO_2922 from Haloferax volcanii
Past sequencing campaigns overlooked small proteins as they seemed to be irrelevant due to their small size. However, their occurrence is widespread, and there is growing evidence that these small proteins are in fact functionally very important in organisms found in all kingdoms of life. Within a g...
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Veröffentlicht in: | Chembiochem : a European journal of chemical biology 2020-01, Vol.21 (1-2), p.149-156 |
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creator | Kubatova, Nina Jonker, Hendrik R. A. Saxena, Krishna Richter, Christian Vogel, Verena Schreiber, Sandra Marchfelder, Anita Schwalbe, Harald |
description | Past sequencing campaigns overlooked small proteins as they seemed to be irrelevant due to their small size. However, their occurrence is widespread, and there is growing evidence that these small proteins are in fact functionally very important in organisms found in all kingdoms of life. Within a global proteome analysis for small proteins of the archaeal model organism Haloferax volcanii, the HVO_2922 protein has been identified. It is differentially expressed in response to changes in iron and salt concentrations, thus suggesting that its expression is stress‐regulated. The protein is conserved among Haloarchaea and contains an uncharacterized domain of unknown function (DUF1508, UPF0339 family protein). We elucidated the NMR solution structure, which shows that the isolated protein forms a symmetrical dimer. The dimerization is found to be concentration‐dependent and essential for protein stability and most likely for its functionality, as mutagenesis at the dimer interface leads to a decrease in stability and protein aggregation.
It takes two: We present a high‐resolution NMR solution structure of the HVO_2922 small protein from H. volcanii. The isolated protein forms a symmetrical dimer, which is stabilized by intramonomer electrostatic interactions. Dimerization is crucial for the protein stability and most probably for its functionality. |
doi_str_mv | 10.1002/cbic.201900085 |
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It takes two: We present a high‐resolution NMR solution structure of the HVO_2922 small protein from H. volcanii. The isolated protein forms a symmetrical dimer, which is stabilized by intramonomer electrostatic interactions. Dimerization is crucial for the protein stability and most probably for its functionality.</description><identifier>ISSN: 1439-4227</identifier><identifier>EISSN: 1439-7633</identifier><identifier>DOI: 10.1002/cbic.201900085</identifier><identifier>PMID: 31161645</identifier><language>eng</language><publisher>Germany: Wiley Subscription Services, Inc</publisher><subject>Archaeal Proteins - chemistry ; Archaeal Proteins - metabolism ; Dimerization ; Dimers ; electrostatic interactions ; Haloferax volcanii - chemistry ; Haloferax volcanii - metabolism ; Interface stability ; Iron ; Models, Molecular ; Molecular structure ; Mutagenesis ; NMR ; NMR spectroscopy ; Nuclear magnetic resonance ; Nuclear Magnetic Resonance, Biomolecular ; Protein Conformation ; Protein interaction ; Protein Stability ; Proteins ; Proteomes ; Solutions ; structure elucidation ; Thermodynamics</subject><ispartof>Chembiochem : a European journal of chemical biology, 2020-01, Vol.21 (1-2), p.149-156</ispartof><rights>2019 Wiley‐VCH Verlag GmbH & Co. KGaA, Weinheim</rights><rights>2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.</rights><rights>2020 Wiley‐VCH Verlag GmbH & Co. KGaA, Weinheim</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4105-4a9840d483a1aa651defec832c6e8e4803c1c0d993beec687b03f1e60786f8db3</citedby><cites>FETCH-LOGICAL-c4105-4a9840d483a1aa651defec832c6e8e4803c1c0d993beec687b03f1e60786f8db3</cites><orcidid>0000-0001-5693-7909</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fcbic.201900085$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fcbic.201900085$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,777,781,1412,27905,27906,45555,45556</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31161645$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kubatova, Nina</creatorcontrib><creatorcontrib>Jonker, Hendrik R. A.</creatorcontrib><creatorcontrib>Saxena, Krishna</creatorcontrib><creatorcontrib>Richter, Christian</creatorcontrib><creatorcontrib>Vogel, Verena</creatorcontrib><creatorcontrib>Schreiber, Sandra</creatorcontrib><creatorcontrib>Marchfelder, Anita</creatorcontrib><creatorcontrib>Schwalbe, Harald</creatorcontrib><title>Solution Structure and Dynamics of the Small Protein HVO_2922 from Haloferax volcanii</title><title>Chembiochem : a European journal of chemical biology</title><addtitle>Chembiochem</addtitle><description>Past sequencing campaigns overlooked small proteins as they seemed to be irrelevant due to their small size. However, their occurrence is widespread, and there is growing evidence that these small proteins are in fact functionally very important in organisms found in all kingdoms of life. Within a global proteome analysis for small proteins of the archaeal model organism Haloferax volcanii, the HVO_2922 protein has been identified. It is differentially expressed in response to changes in iron and salt concentrations, thus suggesting that its expression is stress‐regulated. The protein is conserved among Haloarchaea and contains an uncharacterized domain of unknown function (DUF1508, UPF0339 family protein). We elucidated the NMR solution structure, which shows that the isolated protein forms a symmetrical dimer. The dimerization is found to be concentration‐dependent and essential for protein stability and most likely for its functionality, as mutagenesis at the dimer interface leads to a decrease in stability and protein aggregation.
It takes two: We present a high‐resolution NMR solution structure of the HVO_2922 small protein from H. volcanii. The isolated protein forms a symmetrical dimer, which is stabilized by intramonomer electrostatic interactions. Dimerization is crucial for the protein stability and most probably for its functionality.</description><subject>Archaeal Proteins - chemistry</subject><subject>Archaeal Proteins - metabolism</subject><subject>Dimerization</subject><subject>Dimers</subject><subject>electrostatic interactions</subject><subject>Haloferax volcanii - chemistry</subject><subject>Haloferax volcanii - metabolism</subject><subject>Interface stability</subject><subject>Iron</subject><subject>Models, Molecular</subject><subject>Molecular structure</subject><subject>Mutagenesis</subject><subject>NMR</subject><subject>NMR spectroscopy</subject><subject>Nuclear magnetic resonance</subject><subject>Nuclear Magnetic Resonance, Biomolecular</subject><subject>Protein Conformation</subject><subject>Protein interaction</subject><subject>Protein Stability</subject><subject>Proteins</subject><subject>Proteomes</subject><subject>Solutions</subject><subject>structure elucidation</subject><subject>Thermodynamics</subject><issn>1439-4227</issn><issn>1439-7633</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkD1PwzAQQC0EoqWwMiJLzCn-imOPUD6KVKlIpayW49jCVRIXJwH670nVUkamu-HdO-kBcInRGCNEbkzuzZggLBFCIj0CQ8yoTDJO6fF-Z4RkA3DWNKsekZziUzCgGHPMWToEy0Uou9aHGi7a2Jm2ixbquoD3m1pX3jQwONi-W7iodFnClxha62s4fZsrIgmBLoYKTnUZnI36G36G0uja-3Nw4nTZ2Iv9HIHl48PrZJrM5k_Pk9tZYhhGacK0FAwVTFCNteYpLqyzRlBiuBWWCUQNNqiQkubWGi6yHFGHLUeZ4E4UOR2B6513HcNHZ5tWrUIX6_6lIpRhRngq054a7ygTQ9NE69Q6-krHjcJIbSuqbUV1qNgfXO21XV7Z4oD_ZusBuQO-fGk3_-jU5O558if_AWaufTA</recordid><startdate>20200115</startdate><enddate>20200115</enddate><creator>Kubatova, Nina</creator><creator>Jonker, Hendrik R. A.</creator><creator>Saxena, Krishna</creator><creator>Richter, Christian</creator><creator>Vogel, Verena</creator><creator>Schreiber, Sandra</creator><creator>Marchfelder, Anita</creator><creator>Schwalbe, Harald</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><orcidid>https://orcid.org/0000-0001-5693-7909</orcidid></search><sort><creationdate>20200115</creationdate><title>Solution Structure and Dynamics of the Small Protein HVO_2922 from Haloferax volcanii</title><author>Kubatova, Nina ; Jonker, Hendrik R. A. ; Saxena, Krishna ; Richter, Christian ; Vogel, Verena ; Schreiber, Sandra ; Marchfelder, Anita ; Schwalbe, Harald</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4105-4a9840d483a1aa651defec832c6e8e4803c1c0d993beec687b03f1e60786f8db3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Archaeal Proteins - chemistry</topic><topic>Archaeal Proteins - metabolism</topic><topic>Dimerization</topic><topic>Dimers</topic><topic>electrostatic interactions</topic><topic>Haloferax volcanii - chemistry</topic><topic>Haloferax volcanii - metabolism</topic><topic>Interface stability</topic><topic>Iron</topic><topic>Models, Molecular</topic><topic>Molecular structure</topic><topic>Mutagenesis</topic><topic>NMR</topic><topic>NMR spectroscopy</topic><topic>Nuclear magnetic resonance</topic><topic>Nuclear Magnetic Resonance, Biomolecular</topic><topic>Protein Conformation</topic><topic>Protein interaction</topic><topic>Protein Stability</topic><topic>Proteins</topic><topic>Proteomes</topic><topic>Solutions</topic><topic>structure elucidation</topic><topic>Thermodynamics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kubatova, Nina</creatorcontrib><creatorcontrib>Jonker, Hendrik R. A.</creatorcontrib><creatorcontrib>Saxena, Krishna</creatorcontrib><creatorcontrib>Richter, Christian</creatorcontrib><creatorcontrib>Vogel, Verena</creatorcontrib><creatorcontrib>Schreiber, Sandra</creatorcontrib><creatorcontrib>Marchfelder, Anita</creatorcontrib><creatorcontrib>Schwalbe, Harald</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Chembiochem : a European journal of chemical biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kubatova, Nina</au><au>Jonker, Hendrik R. A.</au><au>Saxena, Krishna</au><au>Richter, Christian</au><au>Vogel, Verena</au><au>Schreiber, Sandra</au><au>Marchfelder, Anita</au><au>Schwalbe, Harald</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Solution Structure and Dynamics of the Small Protein HVO_2922 from Haloferax volcanii</atitle><jtitle>Chembiochem : a European journal of chemical biology</jtitle><addtitle>Chembiochem</addtitle><date>2020-01-15</date><risdate>2020</risdate><volume>21</volume><issue>1-2</issue><spage>149</spage><epage>156</epage><pages>149-156</pages><issn>1439-4227</issn><eissn>1439-7633</eissn><abstract>Past sequencing campaigns overlooked small proteins as they seemed to be irrelevant due to their small size. However, their occurrence is widespread, and there is growing evidence that these small proteins are in fact functionally very important in organisms found in all kingdoms of life. Within a global proteome analysis for small proteins of the archaeal model organism Haloferax volcanii, the HVO_2922 protein has been identified. It is differentially expressed in response to changes in iron and salt concentrations, thus suggesting that its expression is stress‐regulated. The protein is conserved among Haloarchaea and contains an uncharacterized domain of unknown function (DUF1508, UPF0339 family protein). We elucidated the NMR solution structure, which shows that the isolated protein forms a symmetrical dimer. The dimerization is found to be concentration‐dependent and essential for protein stability and most likely for its functionality, as mutagenesis at the dimer interface leads to a decrease in stability and protein aggregation.
It takes two: We present a high‐resolution NMR solution structure of the HVO_2922 small protein from H. volcanii. The isolated protein forms a symmetrical dimer, which is stabilized by intramonomer electrostatic interactions. Dimerization is crucial for the protein stability and most probably for its functionality.</abstract><cop>Germany</cop><pub>Wiley Subscription Services, Inc</pub><pmid>31161645</pmid><doi>10.1002/cbic.201900085</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0001-5693-7909</orcidid></addata></record> |
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subjects | Archaeal Proteins - chemistry Archaeal Proteins - metabolism Dimerization Dimers electrostatic interactions Haloferax volcanii - chemistry Haloferax volcanii - metabolism Interface stability Iron Models, Molecular Molecular structure Mutagenesis NMR NMR spectroscopy Nuclear magnetic resonance Nuclear Magnetic Resonance, Biomolecular Protein Conformation Protein interaction Protein Stability Proteins Proteomes Solutions structure elucidation Thermodynamics |
title | Solution Structure and Dynamics of the Small Protein HVO_2922 from Haloferax volcanii |
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