A Proposal of Chemical Structure Search Using a Regular Expression Extension for SMILES
This paper proposes the use of regular expressions for chemical structure search. As regular expressions dramatically improve the convenience of string search, a regular expression extension for SMILES can improve the convenience of chemical structure search.The regular expression extension for SMIL...
Gespeichert in:
Veröffentlicht in: | Journal of Computer Chemistry, Japan Japan, 2018, Vol.17(5), pp.193-195 |
---|---|
Hauptverfasser: | , |
Format: | Artikel |
Sprache: | eng ; jpn |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 195 |
---|---|
container_issue | 5 |
container_start_page | 193 |
container_title | Journal of Computer Chemistry, Japan |
container_volume | 17 |
creator | SAKAMOTO, Masashi FUJIYOSHI, Akio |
description | This paper proposes the use of regular expressions for chemical structure search. As regular expressions dramatically improve the convenience of string search, a regular expression extension for SMILES can improve the convenience of chemical structure search.The regular expression extension for SMILES is obtained from the existing SMILES notation by adding the curly brackets “{” and “}” for range specifications, the vertical bar “|” for enumerations of choices, the asterisk “*” for repetitions of 0 or more times, and the plus“+” for repetitions of 1 or more times. Software for chemical structure search using the extended SMILES was implemented and released. |
doi_str_mv | 10.2477/jccj.2018-0051 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_journals_2299174033</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2299174033</sourcerecordid><originalsourceid>FETCH-LOGICAL-c298t-ce9d50b0cd4880d1e35501f4ecaca8e12016c87b80f7b0ef30a4ef04ca67bfeb3</originalsourceid><addsrcrecordid>eNo9UE1PwzAMrRBITLAr50icO5x-LOlxGgMmDYEoE8cozZytVdeUpJXg35PSaRf7SX7v2X5BcEdhFiWMPVRKVbMIKA8BUnoRTGicsDDmUXJ5wpTN2XUwda4sAIClQNNsEnwtyLs1rXGyJkaT5QGPpfI472yvut4iyVFadSBbVzZ7IskH7vtaWrL6aS16M9N42GHzj7SxJH9db1b5bXClZe1weuo3wfZp9bl8CTdvz-vlYhOqKONdqDDbpVCA2iWcw45inPrDdIJKKsmR-o_mirOCg2YFoI5BJqghUXLOCo1FfBPcj76tNd89uk5UpreNXymiKMsoSyCOPWs2spQ1zlnUorXlUdpfQUEM-YkhPzHkJ4b8vOBxFFSuk3s806XtSlXjSKdMpEM5y85jdZBWYBP_AYKje78</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2299174033</pqid></control><display><type>article</type><title>A Proposal of Chemical Structure Search Using a Regular Expression Extension for SMILES</title><source>J-STAGE Free</source><source>EZB-FREE-00999 freely available EZB journals</source><source>Free Full-Text Journals in Chemistry</source><creator>SAKAMOTO, Masashi ; FUJIYOSHI, Akio</creator><creatorcontrib>SAKAMOTO, Masashi ; FUJIYOSHI, Akio</creatorcontrib><description>This paper proposes the use of regular expressions for chemical structure search. As regular expressions dramatically improve the convenience of string search, a regular expression extension for SMILES can improve the convenience of chemical structure search.The regular expression extension for SMILES is obtained from the existing SMILES notation by adding the curly brackets “{” and “}” for range specifications, the vertical bar “|” for enumerations of choices, the asterisk “*” for repetitions of 0 or more times, and the plus“+” for repetitions of 1 or more times. Software for chemical structure search using the extended SMILES was implemented and released.</description><identifier>ISSN: 1347-1767</identifier><identifier>EISSN: 1347-3824</identifier><identifier>DOI: 10.2477/jccj.2018-0051</identifier><language>eng ; jpn</language><publisher>Tokyo: Society of Computer Chemistry, Japan</publisher><subject>Brackets ; Graph automaton ; Organic chemistry ; Regular expression ; Searching ; SMILES ; Software reviews ; Text editing ; キーワード:Chemical structure search</subject><ispartof>Journal of Computer Chemistry, Japan, 2018, Vol.17(5), pp.193-195</ispartof><rights>2018 Society of Computer Chemistry, Japan</rights><rights>Copyright Japan Science and Technology Agency 2018</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c298t-ce9d50b0cd4880d1e35501f4ecaca8e12016c87b80f7b0ef30a4ef04ca67bfeb3</citedby><cites>FETCH-LOGICAL-c298t-ce9d50b0cd4880d1e35501f4ecaca8e12016c87b80f7b0ef30a4ef04ca67bfeb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,1883,4024,27923,27924,27925</link.rule.ids></links><search><creatorcontrib>SAKAMOTO, Masashi</creatorcontrib><creatorcontrib>FUJIYOSHI, Akio</creatorcontrib><title>A Proposal of Chemical Structure Search Using a Regular Expression Extension for SMILES</title><title>Journal of Computer Chemistry, Japan</title><description>This paper proposes the use of regular expressions for chemical structure search. As regular expressions dramatically improve the convenience of string search, a regular expression extension for SMILES can improve the convenience of chemical structure search.The regular expression extension for SMILES is obtained from the existing SMILES notation by adding the curly brackets “{” and “}” for range specifications, the vertical bar “|” for enumerations of choices, the asterisk “*” for repetitions of 0 or more times, and the plus“+” for repetitions of 1 or more times. Software for chemical structure search using the extended SMILES was implemented and released.</description><subject>Brackets</subject><subject>Graph automaton</subject><subject>Organic chemistry</subject><subject>Regular expression</subject><subject>Searching</subject><subject>SMILES</subject><subject>Software reviews</subject><subject>Text editing</subject><subject>キーワード:Chemical structure search</subject><issn>1347-1767</issn><issn>1347-3824</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNo9UE1PwzAMrRBITLAr50icO5x-LOlxGgMmDYEoE8cozZytVdeUpJXg35PSaRf7SX7v2X5BcEdhFiWMPVRKVbMIKA8BUnoRTGicsDDmUXJ5wpTN2XUwda4sAIClQNNsEnwtyLs1rXGyJkaT5QGPpfI472yvut4iyVFadSBbVzZ7IskH7vtaWrL6aS16M9N42GHzj7SxJH9db1b5bXClZe1weuo3wfZp9bl8CTdvz-vlYhOqKONdqDDbpVCA2iWcw45inPrDdIJKKsmR-o_mirOCg2YFoI5BJqghUXLOCo1FfBPcj76tNd89uk5UpreNXymiKMsoSyCOPWs2spQ1zlnUorXlUdpfQUEM-YkhPzHkJ4b8vOBxFFSuk3s806XtSlXjSKdMpEM5y85jdZBWYBP_AYKje78</recordid><startdate>2018</startdate><enddate>2018</enddate><creator>SAKAMOTO, Masashi</creator><creator>FUJIYOSHI, Akio</creator><general>Society of Computer Chemistry, Japan</general><general>Japan Science and Technology Agency</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7SC</scope><scope>8FD</scope><scope>JQ2</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope></search><sort><creationdate>2018</creationdate><title>A Proposal of Chemical Structure Search Using a Regular Expression Extension for SMILES</title><author>SAKAMOTO, Masashi ; FUJIYOSHI, Akio</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c298t-ce9d50b0cd4880d1e35501f4ecaca8e12016c87b80f7b0ef30a4ef04ca67bfeb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng ; jpn</language><creationdate>2018</creationdate><topic>Brackets</topic><topic>Graph automaton</topic><topic>Organic chemistry</topic><topic>Regular expression</topic><topic>Searching</topic><topic>SMILES</topic><topic>Software reviews</topic><topic>Text editing</topic><topic>キーワード:Chemical structure search</topic><toplevel>online_resources</toplevel><creatorcontrib>SAKAMOTO, Masashi</creatorcontrib><creatorcontrib>FUJIYOSHI, Akio</creatorcontrib><collection>CrossRef</collection><collection>Computer and Information Systems Abstracts</collection><collection>Technology Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><jtitle>Journal of Computer Chemistry, Japan</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>SAKAMOTO, Masashi</au><au>FUJIYOSHI, Akio</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Proposal of Chemical Structure Search Using a Regular Expression Extension for SMILES</atitle><jtitle>Journal of Computer Chemistry, Japan</jtitle><date>2018</date><risdate>2018</risdate><volume>17</volume><issue>5</issue><spage>193</spage><epage>195</epage><pages>193-195</pages><issn>1347-1767</issn><eissn>1347-3824</eissn><abstract>This paper proposes the use of regular expressions for chemical structure search. As regular expressions dramatically improve the convenience of string search, a regular expression extension for SMILES can improve the convenience of chemical structure search.The regular expression extension for SMILES is obtained from the existing SMILES notation by adding the curly brackets “{” and “}” for range specifications, the vertical bar “|” for enumerations of choices, the asterisk “*” for repetitions of 0 or more times, and the plus“+” for repetitions of 1 or more times. Software for chemical structure search using the extended SMILES was implemented and released.</abstract><cop>Tokyo</cop><pub>Society of Computer Chemistry, Japan</pub><doi>10.2477/jccj.2018-0051</doi><tpages>3</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1347-1767 |
ispartof | Journal of Computer Chemistry, Japan, 2018, Vol.17(5), pp.193-195 |
issn | 1347-1767 1347-3824 |
language | eng ; jpn |
recordid | cdi_proquest_journals_2299174033 |
source | J-STAGE Free; EZB-FREE-00999 freely available EZB journals; Free Full-Text Journals in Chemistry |
subjects | Brackets Graph automaton Organic chemistry Regular expression Searching SMILES Software reviews Text editing キーワード:Chemical structure search |
title | A Proposal of Chemical Structure Search Using a Regular Expression Extension for SMILES |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-22T05%3A38%3A08IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=A%20Proposal%20of%20Chemical%20Structure%20Search%20Using%20a%20Regular%20Expression%20Extension%20for%20SMILES&rft.jtitle=Journal%20of%20Computer%20Chemistry,%20Japan&rft.au=SAKAMOTO,%20Masashi&rft.date=2018&rft.volume=17&rft.issue=5&rft.spage=193&rft.epage=195&rft.pages=193-195&rft.issn=1347-1767&rft.eissn=1347-3824&rft_id=info:doi/10.2477/jccj.2018-0051&rft_dat=%3Cproquest_cross%3E2299174033%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2299174033&rft_id=info:pmid/&rfr_iscdi=true |