Phylogenetics and systematics of Eria and related genera (Orchidaceae: Podochileae)
Abstract A phylogenetic hypothesis for tribe Podochileae with emphasis on subtribe Eriinae s.s. is based on nucleotide sequences of the nuclear ITS and four plastid regions (matK, trnL-F spacer, trnL intron and ycf1). The strict consensus tree based on parsimony is largely congruent with the maximum...
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| Veröffentlicht in: | Botanical journal of the Linnean Society 2018-01, Vol.186 (2), p.179-201 |
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| container_title | Botanical journal of the Linnean Society |
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| creator | Ng, Yan Peng Schuiteman, AndrÉ Pedersen, Henrik Æ Petersen, Gitte Watthana, Santi Seberg, Ole Pridgeon, Alec M Cribb, Phillip J Chase, Mark W |
| description | Abstract
A phylogenetic hypothesis for tribe Podochileae with emphasis on subtribe Eriinae s.s. is based on nucleotide sequences of the nuclear ITS and four plastid regions (matK, trnL-F spacer, trnL intron and ycf1). The strict consensus tree based on parsimony is largely congruent with the maximum likelihood tree with a few major differences; most importantly, monophyly of Podochileae as recently circumscribed is strongly supported by the maximum likelihood tree but not recovered in the parsimony analysis. Monophyly of Thelasiinae s.s. (without Ridleyella) and Eriinae s.l. (including Podochilinae) is supported, whereas Eria s.l. appears polyphyletic. The generic circumscription of Eriinae s.s. (excluding Podochilinae) is revised, and 21 genera are accepted, including two not previously recognized. Nomenclatural changes and a key to genera in Eriinae are provided. |
| doi_str_mv | 10.1093/botlinnean/box088 |
| format | Article |
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A phylogenetic hypothesis for tribe Podochileae with emphasis on subtribe Eriinae s.s. is based on nucleotide sequences of the nuclear ITS and four plastid regions (matK, trnL-F spacer, trnL intron and ycf1). The strict consensus tree based on parsimony is largely congruent with the maximum likelihood tree with a few major differences; most importantly, monophyly of Podochileae as recently circumscribed is strongly supported by the maximum likelihood tree but not recovered in the parsimony analysis. Monophyly of Thelasiinae s.s. (without Ridleyella) and Eriinae s.l. (including Podochilinae) is supported, whereas Eria s.l. appears polyphyletic. The generic circumscription of Eriinae s.s. (excluding Podochilinae) is revised, and 21 genera are accepted, including two not previously recognized. Nomenclatural changes and a key to genera in Eriinae are provided.</description><identifier>ISSN: 0024-4074</identifier><identifier>EISSN: 1095-8339</identifier><identifier>DOI: 10.1093/botlinnean/box088</identifier><language>eng</language><publisher>UK: Oxford University Press</publisher><subject>Bayesian analysis ; Change detection ; Nucleotides ; Phylogenetics ; Phylogeny ; Spacer ; Systematics ; Trees</subject><ispartof>Botanical journal of the Linnean Society, 2018-01, Vol.186 (2), p.179-201</ispartof><rights>2018 The Linnean Society of London, Botanical Journal of the Linnean Society 2018</rights><rights>2018 The Linnean Society of London, Botanical Journal of the Linnean Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c310t-8ec4c9ecceeca68b222e273241bce9abe48c03b3d5ea174cc6b1530840db5de3</citedby><cites>FETCH-LOGICAL-c310t-8ec4c9ecceeca68b222e273241bce9abe48c03b3d5ea174cc6b1530840db5de3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,1584,27924,27925</link.rule.ids></links><search><creatorcontrib>Ng, Yan Peng</creatorcontrib><creatorcontrib>Schuiteman, AndrÉ</creatorcontrib><creatorcontrib>Pedersen, Henrik Æ</creatorcontrib><creatorcontrib>Petersen, Gitte</creatorcontrib><creatorcontrib>Watthana, Santi</creatorcontrib><creatorcontrib>Seberg, Ole</creatorcontrib><creatorcontrib>Pridgeon, Alec M</creatorcontrib><creatorcontrib>Cribb, Phillip J</creatorcontrib><creatorcontrib>Chase, Mark W</creatorcontrib><title>Phylogenetics and systematics of Eria and related genera (Orchidaceae: Podochileae)</title><title>Botanical journal of the Linnean Society</title><description>Abstract
A phylogenetic hypothesis for tribe Podochileae with emphasis on subtribe Eriinae s.s. is based on nucleotide sequences of the nuclear ITS and four plastid regions (matK, trnL-F spacer, trnL intron and ycf1). The strict consensus tree based on parsimony is largely congruent with the maximum likelihood tree with a few major differences; most importantly, monophyly of Podochileae as recently circumscribed is strongly supported by the maximum likelihood tree but not recovered in the parsimony analysis. Monophyly of Thelasiinae s.s. (without Ridleyella) and Eriinae s.l. (including Podochilinae) is supported, whereas Eria s.l. appears polyphyletic. The generic circumscription of Eriinae s.s. (excluding Podochilinae) is revised, and 21 genera are accepted, including two not previously recognized. Nomenclatural changes and a key to genera in Eriinae are provided.</description><subject>Bayesian analysis</subject><subject>Change detection</subject><subject>Nucleotides</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Spacer</subject><subject>Systematics</subject><subject>Trees</subject><issn>0024-4074</issn><issn>1095-8339</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNqNkE1LAzEQhoMoWKs_wNuCFwVX87XdxJuU-gGFFux9SSZTu2W7qckW7L837QpePc28M887Ay8h14w-MKrFo_VdU7ctmja131SpEzJIiyJXQuhTMqCUy1zSUp6TixjXlDImSz0gH_PVvvGf2GJXQ8xM67K4jx1uzFH7ZTYJtTnOAzamQ5cd4GCy21mAVe0MoMGnbO6dT7JJ4u6SnC1NE_Hqtw7J4mWyGL_l09nr-_h5moNgtMsVggSNAIhgRspyzpGXgktmAbWxKBVQYYUr0LBSAowsKwRVkjpbOBRDctOf3Qb_tcPYVWu_C236WHGuGddSlixRrKcg-BgDLqttqDcm7CtGq0N01V90VR9d8tz3Hr_b_gP_AQe1dl0</recordid><startdate>20180125</startdate><enddate>20180125</enddate><creator>Ng, Yan Peng</creator><creator>Schuiteman, AndrÉ</creator><creator>Pedersen, Henrik Æ</creator><creator>Petersen, Gitte</creator><creator>Watthana, Santi</creator><creator>Seberg, Ole</creator><creator>Pridgeon, Alec M</creator><creator>Cribb, Phillip J</creator><creator>Chase, Mark W</creator><general>Oxford University Press</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7SS</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20180125</creationdate><title>Phylogenetics and systematics of Eria and related genera (Orchidaceae: Podochileae)</title><author>Ng, Yan Peng ; Schuiteman, AndrÉ ; Pedersen, Henrik Æ ; Petersen, Gitte ; Watthana, Santi ; Seberg, Ole ; Pridgeon, Alec M ; Cribb, Phillip J ; Chase, Mark W</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c310t-8ec4c9ecceeca68b222e273241bce9abe48c03b3d5ea174cc6b1530840db5de3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Bayesian analysis</topic><topic>Change detection</topic><topic>Nucleotides</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Spacer</topic><topic>Systematics</topic><topic>Trees</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ng, Yan Peng</creatorcontrib><creatorcontrib>Schuiteman, AndrÉ</creatorcontrib><creatorcontrib>Pedersen, Henrik Æ</creatorcontrib><creatorcontrib>Petersen, Gitte</creatorcontrib><creatorcontrib>Watthana, Santi</creatorcontrib><creatorcontrib>Seberg, Ole</creatorcontrib><creatorcontrib>Pridgeon, Alec M</creatorcontrib><creatorcontrib>Cribb, Phillip J</creatorcontrib><creatorcontrib>Chase, Mark W</creatorcontrib><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Botanical journal of the Linnean Society</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ng, Yan Peng</au><au>Schuiteman, AndrÉ</au><au>Pedersen, Henrik Æ</au><au>Petersen, Gitte</au><au>Watthana, Santi</au><au>Seberg, Ole</au><au>Pridgeon, Alec M</au><au>Cribb, Phillip J</au><au>Chase, Mark W</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogenetics and systematics of Eria and related genera (Orchidaceae: Podochileae)</atitle><jtitle>Botanical journal of the Linnean Society</jtitle><date>2018-01-25</date><risdate>2018</risdate><volume>186</volume><issue>2</issue><spage>179</spage><epage>201</epage><pages>179-201</pages><issn>0024-4074</issn><eissn>1095-8339</eissn><abstract>Abstract
A phylogenetic hypothesis for tribe Podochileae with emphasis on subtribe Eriinae s.s. is based on nucleotide sequences of the nuclear ITS and four plastid regions (matK, trnL-F spacer, trnL intron and ycf1). The strict consensus tree based on parsimony is largely congruent with the maximum likelihood tree with a few major differences; most importantly, monophyly of Podochileae as recently circumscribed is strongly supported by the maximum likelihood tree but not recovered in the parsimony analysis. Monophyly of Thelasiinae s.s. (without Ridleyella) and Eriinae s.l. (including Podochilinae) is supported, whereas Eria s.l. appears polyphyletic. The generic circumscription of Eriinae s.s. (excluding Podochilinae) is revised, and 21 genera are accepted, including two not previously recognized. Nomenclatural changes and a key to genera in Eriinae are provided.</abstract><cop>UK</cop><pub>Oxford University Press</pub><doi>10.1093/botlinnean/box088</doi><tpages>23</tpages></addata></record> |
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| source | Oxford University Press Journals All Titles (1996-Current) |
| subjects | Bayesian analysis Change detection Nucleotides Phylogenetics Phylogeny Spacer Systematics Trees |
| title | Phylogenetics and systematics of Eria and related genera (Orchidaceae: Podochileae) |
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