Replication study of 34 common SNP s associated with prostate cancer in the Romanian population
Prostate cancer is the third‐most common form of cancer in men in Romania. The Romanian unscreened population represents a good sample to study common genetic risk variants. However, a comprehensive analysis has not been conducted yet. Here, we report our replication efforts in a Romanian population...
Gespeichert in:
Veröffentlicht in: | Journal of cellular and molecular medicine 2016-04, Vol.20 (4), p.594-600 |
---|---|
Hauptverfasser: | , , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 600 |
---|---|
container_issue | 4 |
container_start_page | 594 |
container_title | Journal of cellular and molecular medicine |
container_volume | 20 |
creator | Jinga, Viorel Csiki, Irma Eva Manolescu, Andrei Iordache, Paul Mates, Ioan Nicolae Radavoi, Daniel Rascu, Stefan Badescu, Daniel Badea, Paula Mates, Dana |
description | Prostate cancer is the third‐most common form of cancer in men in Romania. The Romanian unscreened population represents a good sample to study common genetic risk variants. However, a comprehensive analysis has not been conducted yet. Here, we report our replication efforts in a Romanian population of 979 cases and 1027 controls, for potential association of 34 literature‐reported single nucleotide polymorphisms (
SNP
s) with prostate cancer. We also examined whether any
SNP
was differentially associated with tumour grade or stage at diagnosis, with disease aggressiveness, and with the levels of
PSA
(prostate specific antigen). In the allelic analysis, we replicated the previously reported risk for 19 loci on 4q24, 6q25.3, 7p15.2, 8q24.21, 10q11.23, 10q26.13, 11p15.5, 11q13.2, 11q13.3. Statistically significant associations were replicated for other six
SNP
s only with a particular disease phenotype: low‐grade tumour and low
PSA
levels (rs1512268), high
PSA
levels (rs401681 and rs11649743), less aggressive cancers (rs1465618, rs721048, rs17021918). The strongest association of our tested
SNP
's with
PSA
in controls was for rs2735839, with 29% increase for each copy of the major allele G, consistent with previous results. Our results suggest that rs4962416, previously associated only with prostate cancer, is also associated with
PSA
levels, with 12% increase for each copy of the minor allele C. The study enabled the replication of the effect for the majority of previously reported genetic variants in a set of clinically relevant prostate cancers. This is the first replication study on these loci, known to associate with prostate cancer, in a Romanian population. |
doi_str_mv | 10.1111/jcmm.12729 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_journals_2290170921</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2290170921</sourcerecordid><originalsourceid>FETCH-LOGICAL-c1041-1330e55b99850dff8a4e1ba2d697a0ece3509c9788b6a73acebfbe3e695c33483</originalsourceid><addsrcrecordid>eNotkNtKxDAQhoMouK7e-AQB74SuSaaH5FIWT7CorHod0nTKtmyb2qTIvr3Zw9zMgZ9_Zj5Cbjlb8BgPre26BReFUGdkxjMpklRBen6quQR5Sa68bxmDnIOaEb3GYdtYExrXUx-makddTSGl1nVdHH29f1JPjffONiZgRf-asKHD6HyILbWmtzjSpqdhg3TtOtM3pqeDG6btwfOaXNRm6_HmlOfk5_npe_marD5e3paPq8RylvKEAzDMslIpmbGqrqVJkZdGVLkqDEOLkDFlVSFlmZsCjMWyLhEwV5kFSCXMyd3RN572O6EPunXT2MeVWgjFeMGU4FF1f1TZ-IAfsdbD2HRm3GnO9B6g3gPUB4DwD5kaY90</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2290170921</pqid></control><display><type>article</type><title>Replication study of 34 common SNP s associated with prostate cancer in the Romanian population</title><source>DOAJ Directory of Open Access Journals</source><source>Wiley-Blackwell Open Access Titles</source><source>EZB-FREE-00999 freely available EZB journals</source><source>Wiley Online Library All Journals</source><source>PubMed Central</source><creator>Jinga, Viorel ; Csiki, Irma Eva ; Manolescu, Andrei ; Iordache, Paul ; Mates, Ioan Nicolae ; Radavoi, Daniel ; Rascu, Stefan ; Badescu, Daniel ; Badea, Paula ; Mates, Dana</creator><creatorcontrib>Jinga, Viorel ; Csiki, Irma Eva ; Manolescu, Andrei ; Iordache, Paul ; Mates, Ioan Nicolae ; Radavoi, Daniel ; Rascu, Stefan ; Badescu, Daniel ; Badea, Paula ; Mates, Dana</creatorcontrib><description>Prostate cancer is the third‐most common form of cancer in men in Romania. The Romanian unscreened population represents a good sample to study common genetic risk variants. However, a comprehensive analysis has not been conducted yet. Here, we report our replication efforts in a Romanian population of 979 cases and 1027 controls, for potential association of 34 literature‐reported single nucleotide polymorphisms (
SNP
s) with prostate cancer. We also examined whether any
SNP
was differentially associated with tumour grade or stage at diagnosis, with disease aggressiveness, and with the levels of
PSA
(prostate specific antigen). In the allelic analysis, we replicated the previously reported risk for 19 loci on 4q24, 6q25.3, 7p15.2, 8q24.21, 10q11.23, 10q26.13, 11p15.5, 11q13.2, 11q13.3. Statistically significant associations were replicated for other six
SNP
s only with a particular disease phenotype: low‐grade tumour and low
PSA
levels (rs1512268), high
PSA
levels (rs401681 and rs11649743), less aggressive cancers (rs1465618, rs721048, rs17021918). The strongest association of our tested
SNP
's with
PSA
in controls was for rs2735839, with 29% increase for each copy of the major allele G, consistent with previous results. Our results suggest that rs4962416, previously associated only with prostate cancer, is also associated with
PSA
levels, with 12% increase for each copy of the minor allele C. The study enabled the replication of the effect for the majority of previously reported genetic variants in a set of clinically relevant prostate cancers. This is the first replication study on these loci, known to associate with prostate cancer, in a Romanian population.</description><identifier>ISSN: 1582-1838</identifier><identifier>EISSN: 1582-4934</identifier><identifier>DOI: 10.1111/jcmm.12729</identifier><language>eng</language><publisher>Chichester: John Wiley & Sons, Inc</publisher><subject>Alleles ; Biopsy ; Chromosome 4 ; Chromosome 6 ; Deoxyribonucleic acid ; DNA ; Family medical history ; Genetic analysis ; Genetic diversity ; Genetic research ; Genetic variance ; Genomes ; Phenotypes ; Population ; Prostate ; Prostate cancer ; Replication ; Single-nucleotide polymorphism ; Statistical analysis ; Studies ; Tumors ; Ultrasonic imaging ; Urology</subject><ispartof>Journal of cellular and molecular medicine, 2016-04, Vol.20 (4), p.594-600</ispartof><rights>2016. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c1041-1330e55b99850dff8a4e1ba2d697a0ece3509c9788b6a73acebfbe3e695c33483</citedby><cites>FETCH-LOGICAL-c1041-1330e55b99850dff8a4e1ba2d697a0ece3509c9788b6a73acebfbe3e695c33483</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,864,27922,27923</link.rule.ids></links><search><creatorcontrib>Jinga, Viorel</creatorcontrib><creatorcontrib>Csiki, Irma Eva</creatorcontrib><creatorcontrib>Manolescu, Andrei</creatorcontrib><creatorcontrib>Iordache, Paul</creatorcontrib><creatorcontrib>Mates, Ioan Nicolae</creatorcontrib><creatorcontrib>Radavoi, Daniel</creatorcontrib><creatorcontrib>Rascu, Stefan</creatorcontrib><creatorcontrib>Badescu, Daniel</creatorcontrib><creatorcontrib>Badea, Paula</creatorcontrib><creatorcontrib>Mates, Dana</creatorcontrib><title>Replication study of 34 common SNP s associated with prostate cancer in the Romanian population</title><title>Journal of cellular and molecular medicine</title><description>Prostate cancer is the third‐most common form of cancer in men in Romania. The Romanian unscreened population represents a good sample to study common genetic risk variants. However, a comprehensive analysis has not been conducted yet. Here, we report our replication efforts in a Romanian population of 979 cases and 1027 controls, for potential association of 34 literature‐reported single nucleotide polymorphisms (
SNP
s) with prostate cancer. We also examined whether any
SNP
was differentially associated with tumour grade or stage at diagnosis, with disease aggressiveness, and with the levels of
PSA
(prostate specific antigen). In the allelic analysis, we replicated the previously reported risk for 19 loci on 4q24, 6q25.3, 7p15.2, 8q24.21, 10q11.23, 10q26.13, 11p15.5, 11q13.2, 11q13.3. Statistically significant associations were replicated for other six
SNP
s only with a particular disease phenotype: low‐grade tumour and low
PSA
levels (rs1512268), high
PSA
levels (rs401681 and rs11649743), less aggressive cancers (rs1465618, rs721048, rs17021918). The strongest association of our tested
SNP
's with
PSA
in controls was for rs2735839, with 29% increase for each copy of the major allele G, consistent with previous results. Our results suggest that rs4962416, previously associated only with prostate cancer, is also associated with
PSA
levels, with 12% increase for each copy of the minor allele C. The study enabled the replication of the effect for the majority of previously reported genetic variants in a set of clinically relevant prostate cancers. This is the first replication study on these loci, known to associate with prostate cancer, in a Romanian population.</description><subject>Alleles</subject><subject>Biopsy</subject><subject>Chromosome 4</subject><subject>Chromosome 6</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Family medical history</subject><subject>Genetic analysis</subject><subject>Genetic diversity</subject><subject>Genetic research</subject><subject>Genetic variance</subject><subject>Genomes</subject><subject>Phenotypes</subject><subject>Population</subject><subject>Prostate</subject><subject>Prostate cancer</subject><subject>Replication</subject><subject>Single-nucleotide polymorphism</subject><subject>Statistical analysis</subject><subject>Studies</subject><subject>Tumors</subject><subject>Ultrasonic imaging</subject><subject>Urology</subject><issn>1582-1838</issn><issn>1582-4934</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNotkNtKxDAQhoMouK7e-AQB74SuSaaH5FIWT7CorHod0nTKtmyb2qTIvr3Zw9zMgZ9_Zj5Cbjlb8BgPre26BReFUGdkxjMpklRBen6quQR5Sa68bxmDnIOaEb3GYdtYExrXUx-makddTSGl1nVdHH29f1JPjffONiZgRf-asKHD6HyILbWmtzjSpqdhg3TtOtM3pqeDG6btwfOaXNRm6_HmlOfk5_npe_marD5e3paPq8RylvKEAzDMslIpmbGqrqVJkZdGVLkqDEOLkDFlVSFlmZsCjMWyLhEwV5kFSCXMyd3RN572O6EPunXT2MeVWgjFeMGU4FF1f1TZ-IAfsdbD2HRm3GnO9B6g3gPUB4DwD5kaY90</recordid><startdate>201604</startdate><enddate>201604</enddate><creator>Jinga, Viorel</creator><creator>Csiki, Irma Eva</creator><creator>Manolescu, Andrei</creator><creator>Iordache, Paul</creator><creator>Mates, Ioan Nicolae</creator><creator>Radavoi, Daniel</creator><creator>Rascu, Stefan</creator><creator>Badescu, Daniel</creator><creator>Badea, Paula</creator><creator>Mates, Dana</creator><general>John Wiley & Sons, Inc</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QP</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope></search><sort><creationdate>201604</creationdate><title>Replication study of 34 common SNP s associated with prostate cancer in the Romanian population</title><author>Jinga, Viorel ; Csiki, Irma Eva ; Manolescu, Andrei ; Iordache, Paul ; Mates, Ioan Nicolae ; Radavoi, Daniel ; Rascu, Stefan ; Badescu, Daniel ; Badea, Paula ; Mates, Dana</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c1041-1330e55b99850dff8a4e1ba2d697a0ece3509c9788b6a73acebfbe3e695c33483</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Alleles</topic><topic>Biopsy</topic><topic>Chromosome 4</topic><topic>Chromosome 6</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Family medical history</topic><topic>Genetic analysis</topic><topic>Genetic diversity</topic><topic>Genetic research</topic><topic>Genetic variance</topic><topic>Genomes</topic><topic>Phenotypes</topic><topic>Population</topic><topic>Prostate</topic><topic>Prostate cancer</topic><topic>Replication</topic><topic>Single-nucleotide polymorphism</topic><topic>Statistical analysis</topic><topic>Studies</topic><topic>Tumors</topic><topic>Ultrasonic imaging</topic><topic>Urology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jinga, Viorel</creatorcontrib><creatorcontrib>Csiki, Irma Eva</creatorcontrib><creatorcontrib>Manolescu, Andrei</creatorcontrib><creatorcontrib>Iordache, Paul</creatorcontrib><creatorcontrib>Mates, Ioan Nicolae</creatorcontrib><creatorcontrib>Radavoi, Daniel</creatorcontrib><creatorcontrib>Rascu, Stefan</creatorcontrib><creatorcontrib>Badescu, Daniel</creatorcontrib><creatorcontrib>Badea, Paula</creatorcontrib><creatorcontrib>Mates, Dana</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><jtitle>Journal of cellular and molecular medicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jinga, Viorel</au><au>Csiki, Irma Eva</au><au>Manolescu, Andrei</au><au>Iordache, Paul</au><au>Mates, Ioan Nicolae</au><au>Radavoi, Daniel</au><au>Rascu, Stefan</au><au>Badescu, Daniel</au><au>Badea, Paula</au><au>Mates, Dana</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Replication study of 34 common SNP s associated with prostate cancer in the Romanian population</atitle><jtitle>Journal of cellular and molecular medicine</jtitle><date>2016-04</date><risdate>2016</risdate><volume>20</volume><issue>4</issue><spage>594</spage><epage>600</epage><pages>594-600</pages><issn>1582-1838</issn><eissn>1582-4934</eissn><abstract>Prostate cancer is the third‐most common form of cancer in men in Romania. The Romanian unscreened population represents a good sample to study common genetic risk variants. However, a comprehensive analysis has not been conducted yet. Here, we report our replication efforts in a Romanian population of 979 cases and 1027 controls, for potential association of 34 literature‐reported single nucleotide polymorphisms (
SNP
s) with prostate cancer. We also examined whether any
SNP
was differentially associated with tumour grade or stage at diagnosis, with disease aggressiveness, and with the levels of
PSA
(prostate specific antigen). In the allelic analysis, we replicated the previously reported risk for 19 loci on 4q24, 6q25.3, 7p15.2, 8q24.21, 10q11.23, 10q26.13, 11p15.5, 11q13.2, 11q13.3. Statistically significant associations were replicated for other six
SNP
s only with a particular disease phenotype: low‐grade tumour and low
PSA
levels (rs1512268), high
PSA
levels (rs401681 and rs11649743), less aggressive cancers (rs1465618, rs721048, rs17021918). The strongest association of our tested
SNP
's with
PSA
in controls was for rs2735839, with 29% increase for each copy of the major allele G, consistent with previous results. Our results suggest that rs4962416, previously associated only with prostate cancer, is also associated with
PSA
levels, with 12% increase for each copy of the minor allele C. The study enabled the replication of the effect for the majority of previously reported genetic variants in a set of clinically relevant prostate cancers. This is the first replication study on these loci, known to associate with prostate cancer, in a Romanian population.</abstract><cop>Chichester</cop><pub>John Wiley & Sons, Inc</pub><doi>10.1111/jcmm.12729</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1582-1838 |
ispartof | Journal of cellular and molecular medicine, 2016-04, Vol.20 (4), p.594-600 |
issn | 1582-1838 1582-4934 |
language | eng |
recordid | cdi_proquest_journals_2290170921 |
source | DOAJ Directory of Open Access Journals; Wiley-Blackwell Open Access Titles; EZB-FREE-00999 freely available EZB journals; Wiley Online Library All Journals; PubMed Central |
subjects | Alleles Biopsy Chromosome 4 Chromosome 6 Deoxyribonucleic acid DNA Family medical history Genetic analysis Genetic diversity Genetic research Genetic variance Genomes Phenotypes Population Prostate Prostate cancer Replication Single-nucleotide polymorphism Statistical analysis Studies Tumors Ultrasonic imaging Urology |
title | Replication study of 34 common SNP s associated with prostate cancer in the Romanian population |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-13T19%3A49%3A59IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Replication%20study%20of%2034%20common%20SNP%20s%20associated%20with%20prostate%20cancer%20in%20the%20Romanian%20population&rft.jtitle=Journal%20of%20cellular%20and%20molecular%20medicine&rft.au=Jinga,%20Viorel&rft.date=2016-04&rft.volume=20&rft.issue=4&rft.spage=594&rft.epage=600&rft.pages=594-600&rft.issn=1582-1838&rft.eissn=1582-4934&rft_id=info:doi/10.1111/jcmm.12729&rft_dat=%3Cproquest_cross%3E2290170921%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2290170921&rft_id=info:pmid/&rfr_iscdi=true |