The Collaborative Potential of Research Infrastructures in Addressing Global Scientific Questions
Research Infrastructures (RIs) are facilities, resources and services used by scientists to perform research and support innovation. A number of EU research infrastructures [e.g. e-Science and Technology European Infrastructure for Biodiversity and Ecosystem Research (LifeWatch) European Research Ii...
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Veröffentlicht in: | Biodiversity Information Science and Standards 2019-06, Vol.3 |
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creator | Arvanitidis, Christos Warwick, Richard Somerfield, Paul Pavloudi, Christina Pafilis, Evangelos Oulas, Anastasis Chatzigeorgiou, Giorgos Gerovasileiou, Vasilis Patkos, Theodore Bailly, Nicolas Hernandez, Francisco Vanhoorne, Bart Vandepitte, Leen Appeltans, Ward Keklikoglou, Kleoniki Chatzinikolaou, Eva Michalakis, Nikitas Filiopoulou, Irene Panteri, Emmanouela Gougousis, Alexandros Bravakos, Panos Christakis, Christos Kassapidis, Panagiotis Kotoulas, Georgios Magoulas, Antonios |
description | Research Infrastructures (RIs) are facilities, resources and services used by scientists to perform research and support innovation. A number of EU research infrastructures [e.g. e-Science and Technology European Infrastructure for Biodiversity and Ecosystem Research (LifeWatch) European Research Iinfrastructures Consortium (ERIC); The European life-sciences Infrastructure for biological Information (ELIXIR); the European Marine Biological Resource Centre (EMBRC ERIC); the European Research Infrastructure for Imaging Technologies in Biological and Biomedical Sciences (uroBioImaging ERIC)] have been building Virtual Research Environments (VREs), which include many virtual laboratories (vLabs) offering, one stop data access to scientists, high computational capacity and collaborative research platforms in support of the requirements of the digital science. This presentation gives examples on the use of the vLabs developed by LifeWatch ERIC which have subsequently been taken up as web services by other RIs.
The RvLab operates on a high-performance computer cluster, and has been used in order to analyse various properties of taxon equality, with a focus on marine species. This taxonomic information on marine biota is organized and made publicly available through the World Register of Marine Species (WoRMS) that delivers more than 250,000 described valid species names. Although scientists consider an
equal
status (in terms of contribution to overall diversity) to each taxon used in taxonomy, biogeography, ecology and biodiversity, the question “
are all taxa equal?
” has never been tested at a global scale. We present evidence that this question can be addressed by applying relatedness indices (Taxonomic Distinctness) over the entire WoRMS metazoan tree.
The virtual micro-CT laboratory (Micro-CT vLab), which can be used by the members of the scientific community interested in the digitisation methods and biological collections, makes the micro-CT data exploration of natural history specimens freely available over the internet. Micro-CT vLab makes it possible the online exploration and dissemination of micro-CT datasets, which are only rarely made available to the public due to their very large size and a lack of dedicated online platforms supporting the interactive manipulation of 3D data. Examples of how these vLabs can be used by other RIs are provided. |
doi_str_mv | 10.3897/biss.3.37289 |
format | Article |
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The RvLab operates on a high-performance computer cluster, and has been used in order to analyse various properties of taxon equality, with a focus on marine species. This taxonomic information on marine biota is organized and made publicly available through the World Register of Marine Species (WoRMS) that delivers more than 250,000 described valid species names. Although scientists consider an
equal
status (in terms of contribution to overall diversity) to each taxon used in taxonomy, biogeography, ecology and biodiversity, the question “
are all taxa equal?
” has never been tested at a global scale. We present evidence that this question can be addressed by applying relatedness indices (Taxonomic Distinctness) over the entire WoRMS metazoan tree.
The virtual micro-CT laboratory (Micro-CT vLab), which can be used by the members of the scientific community interested in the digitisation methods and biological collections, makes the micro-CT data exploration of natural history specimens freely available over the internet. Micro-CT vLab makes it possible the online exploration and dissemination of micro-CT datasets, which are only rarely made available to the public due to their very large size and a lack of dedicated online platforms supporting the interactive manipulation of 3D data. Examples of how these vLabs can be used by other RIs are provided.</description><identifier>ISSN: 2535-0897</identifier><identifier>EISSN: 2535-0897</identifier><identifier>DOI: 10.3897/biss.3.37289</identifier><language>eng</language><publisher>Sofia: Pensoft Publishers</publisher><subject>Biodiversity ; Biogeography ; Collaboration ; Computed tomography ; Computer applications ; Data collection ; Infrastructure ; Internet ; Laboratories ; Scientists ; Species ; Taxonomy</subject><ispartof>Biodiversity Information Science and Standards, 2019-06, Vol.3</ispartof><rights>2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><orcidid>0000-0002-1538-0320 ; 0000-0003-4994-0653 ; 0000-0002-6693-2033 ; 0000-0001-5106-6067 ; 0000-0003-3507-6542 ; 0000-0002-9143-7480 ; 0000-0002-3237-4547</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Arvanitidis, Christos</creatorcontrib><creatorcontrib>Warwick, Richard</creatorcontrib><creatorcontrib>Somerfield, Paul</creatorcontrib><creatorcontrib>Pavloudi, Christina</creatorcontrib><creatorcontrib>Pafilis, Evangelos</creatorcontrib><creatorcontrib>Oulas, Anastasis</creatorcontrib><creatorcontrib>Chatzigeorgiou, Giorgos</creatorcontrib><creatorcontrib>Gerovasileiou, Vasilis</creatorcontrib><creatorcontrib>Patkos, Theodore</creatorcontrib><creatorcontrib>Bailly, Nicolas</creatorcontrib><creatorcontrib>Hernandez, Francisco</creatorcontrib><creatorcontrib>Vanhoorne, Bart</creatorcontrib><creatorcontrib>Vandepitte, Leen</creatorcontrib><creatorcontrib>Appeltans, Ward</creatorcontrib><creatorcontrib>Keklikoglou, Kleoniki</creatorcontrib><creatorcontrib>Chatzinikolaou, Eva</creatorcontrib><creatorcontrib>Michalakis, Nikitas</creatorcontrib><creatorcontrib>Filiopoulou, Irene</creatorcontrib><creatorcontrib>Panteri, Emmanouela</creatorcontrib><creatorcontrib>Gougousis, Alexandros</creatorcontrib><creatorcontrib>Bravakos, Panos</creatorcontrib><creatorcontrib>Christakis, Christos</creatorcontrib><creatorcontrib>Kassapidis, Panagiotis</creatorcontrib><creatorcontrib>Kotoulas, Georgios</creatorcontrib><creatorcontrib>Magoulas, Antonios</creatorcontrib><title>The Collaborative Potential of Research Infrastructures in Addressing Global Scientific Questions</title><title>Biodiversity Information Science and Standards</title><description>Research Infrastructures (RIs) are facilities, resources and services used by scientists to perform research and support innovation. A number of EU research infrastructures [e.g. e-Science and Technology European Infrastructure for Biodiversity and Ecosystem Research (LifeWatch) European Research Iinfrastructures Consortium (ERIC); The European life-sciences Infrastructure for biological Information (ELIXIR); the European Marine Biological Resource Centre (EMBRC ERIC); the European Research Infrastructure for Imaging Technologies in Biological and Biomedical Sciences (uroBioImaging ERIC)] have been building Virtual Research Environments (VREs), which include many virtual laboratories (vLabs) offering, one stop data access to scientists, high computational capacity and collaborative research platforms in support of the requirements of the digital science. This presentation gives examples on the use of the vLabs developed by LifeWatch ERIC which have subsequently been taken up as web services by other RIs.
The RvLab operates on a high-performance computer cluster, and has been used in order to analyse various properties of taxon equality, with a focus on marine species. This taxonomic information on marine biota is organized and made publicly available through the World Register of Marine Species (WoRMS) that delivers more than 250,000 described valid species names. Although scientists consider an
equal
status (in terms of contribution to overall diversity) to each taxon used in taxonomy, biogeography, ecology and biodiversity, the question “
are all taxa equal?
” has never been tested at a global scale. We present evidence that this question can be addressed by applying relatedness indices (Taxonomic Distinctness) over the entire WoRMS metazoan tree.
The virtual micro-CT laboratory (Micro-CT vLab), which can be used by the members of the scientific community interested in the digitisation methods and biological collections, makes the micro-CT data exploration of natural history specimens freely available over the internet. Micro-CT vLab makes it possible the online exploration and dissemination of micro-CT datasets, which are only rarely made available to the public due to their very large size and a lack of dedicated online platforms supporting the interactive manipulation of 3D data. Examples of how these vLabs can be used by other RIs are provided.</description><subject>Biodiversity</subject><subject>Biogeography</subject><subject>Collaboration</subject><subject>Computed tomography</subject><subject>Computer applications</subject><subject>Data collection</subject><subject>Infrastructure</subject><subject>Internet</subject><subject>Laboratories</subject><subject>Scientists</subject><subject>Species</subject><subject>Taxonomy</subject><issn>2535-0897</issn><issn>2535-0897</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNpNUE1LAzEUDKJgqb35AwJe3ZqPzSY5lqJtoeBXPYdsNrEp66Ymu4L_3qz14OnN4828YQaAa4zmVEh-V_uU5nROORHyDEwIo6xA-XD-D1-CWUoHhBCRhIhKTIDe7S1chrbVdYi6918WPoXedr3XLQwOvthkdTR7uOlc1KmPg-mHaBP0HVw0TUbJd-9w1YY6C16NH6XOG_g82NT70KUrcOF0m-zsb07B28P9brkuto-rzXKxLQxGVBbSGdwgIWzDOMN5KTlrOEcSEcwcbrSzXPCaVKXFlauEQ5ixyhiKaiq4wHQKbk5_jzF8jubqEIbYZUuVsxJacSnLzLo9sUwMKUXr1DH6Dx2_FUZq7FGNPSqqfnukP3tGZoI</recordid><startdate>20190621</startdate><enddate>20190621</enddate><creator>Arvanitidis, Christos</creator><creator>Warwick, Richard</creator><creator>Somerfield, Paul</creator><creator>Pavloudi, Christina</creator><creator>Pafilis, Evangelos</creator><creator>Oulas, Anastasis</creator><creator>Chatzigeorgiou, Giorgos</creator><creator>Gerovasileiou, Vasilis</creator><creator>Patkos, Theodore</creator><creator>Bailly, Nicolas</creator><creator>Hernandez, Francisco</creator><creator>Vanhoorne, Bart</creator><creator>Vandepitte, Leen</creator><creator>Appeltans, Ward</creator><creator>Keklikoglou, Kleoniki</creator><creator>Chatzinikolaou, Eva</creator><creator>Michalakis, Nikitas</creator><creator>Filiopoulou, Irene</creator><creator>Panteri, Emmanouela</creator><creator>Gougousis, Alexandros</creator><creator>Bravakos, Panos</creator><creator>Christakis, Christos</creator><creator>Kassapidis, Panagiotis</creator><creator>Kotoulas, Georgios</creator><creator>Magoulas, Antonios</creator><general>Pensoft Publishers</general><scope>AAYXX</scope><scope>CITATION</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><orcidid>https://orcid.org/0000-0002-1538-0320</orcidid><orcidid>https://orcid.org/0000-0003-4994-0653</orcidid><orcidid>https://orcid.org/0000-0002-6693-2033</orcidid><orcidid>https://orcid.org/0000-0001-5106-6067</orcidid><orcidid>https://orcid.org/0000-0003-3507-6542</orcidid><orcidid>https://orcid.org/0000-0002-9143-7480</orcidid><orcidid>https://orcid.org/0000-0002-3237-4547</orcidid></search><sort><creationdate>20190621</creationdate><title>The Collaborative Potential of Research Infrastructures in Addressing Global Scientific Questions</title><author>Arvanitidis, Christos ; Warwick, Richard ; Somerfield, Paul ; Pavloudi, Christina ; Pafilis, Evangelos ; Oulas, Anastasis ; Chatzigeorgiou, Giorgos ; Gerovasileiou, Vasilis ; Patkos, Theodore ; Bailly, Nicolas ; Hernandez, Francisco ; Vanhoorne, Bart ; Vandepitte, Leen ; Appeltans, Ward ; Keklikoglou, Kleoniki ; Chatzinikolaou, Eva ; Michalakis, Nikitas ; Filiopoulou, Irene ; Panteri, Emmanouela ; Gougousis, Alexandros ; Bravakos, Panos ; Christakis, Christos ; Kassapidis, Panagiotis ; Kotoulas, Georgios ; Magoulas, Antonios</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c1039-9fc1d088ed5751fc1475d77090215f1dafe787b264e16f68f01556cc30b387813</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Biodiversity</topic><topic>Biogeography</topic><topic>Collaboration</topic><topic>Computed tomography</topic><topic>Computer applications</topic><topic>Data collection</topic><topic>Infrastructure</topic><topic>Internet</topic><topic>Laboratories</topic><topic>Scientists</topic><topic>Species</topic><topic>Taxonomy</topic><toplevel>online_resources</toplevel><creatorcontrib>Arvanitidis, Christos</creatorcontrib><creatorcontrib>Warwick, Richard</creatorcontrib><creatorcontrib>Somerfield, Paul</creatorcontrib><creatorcontrib>Pavloudi, Christina</creatorcontrib><creatorcontrib>Pafilis, Evangelos</creatorcontrib><creatorcontrib>Oulas, Anastasis</creatorcontrib><creatorcontrib>Chatzigeorgiou, Giorgos</creatorcontrib><creatorcontrib>Gerovasileiou, Vasilis</creatorcontrib><creatorcontrib>Patkos, Theodore</creatorcontrib><creatorcontrib>Bailly, Nicolas</creatorcontrib><creatorcontrib>Hernandez, Francisco</creatorcontrib><creatorcontrib>Vanhoorne, Bart</creatorcontrib><creatorcontrib>Vandepitte, Leen</creatorcontrib><creatorcontrib>Appeltans, Ward</creatorcontrib><creatorcontrib>Keklikoglou, Kleoniki</creatorcontrib><creatorcontrib>Chatzinikolaou, Eva</creatorcontrib><creatorcontrib>Michalakis, Nikitas</creatorcontrib><creatorcontrib>Filiopoulou, Irene</creatorcontrib><creatorcontrib>Panteri, Emmanouela</creatorcontrib><creatorcontrib>Gougousis, Alexandros</creatorcontrib><creatorcontrib>Bravakos, Panos</creatorcontrib><creatorcontrib>Christakis, Christos</creatorcontrib><creatorcontrib>Kassapidis, Panagiotis</creatorcontrib><creatorcontrib>Kotoulas, Georgios</creatorcontrib><creatorcontrib>Magoulas, Antonios</creatorcontrib><collection>CrossRef</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><jtitle>Biodiversity Information Science and Standards</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Arvanitidis, Christos</au><au>Warwick, Richard</au><au>Somerfield, Paul</au><au>Pavloudi, Christina</au><au>Pafilis, Evangelos</au><au>Oulas, Anastasis</au><au>Chatzigeorgiou, Giorgos</au><au>Gerovasileiou, Vasilis</au><au>Patkos, Theodore</au><au>Bailly, Nicolas</au><au>Hernandez, Francisco</au><au>Vanhoorne, Bart</au><au>Vandepitte, Leen</au><au>Appeltans, Ward</au><au>Keklikoglou, Kleoniki</au><au>Chatzinikolaou, Eva</au><au>Michalakis, Nikitas</au><au>Filiopoulou, Irene</au><au>Panteri, Emmanouela</au><au>Gougousis, Alexandros</au><au>Bravakos, Panos</au><au>Christakis, Christos</au><au>Kassapidis, Panagiotis</au><au>Kotoulas, Georgios</au><au>Magoulas, Antonios</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The Collaborative Potential of Research Infrastructures in Addressing Global Scientific Questions</atitle><jtitle>Biodiversity Information Science and Standards</jtitle><date>2019-06-21</date><risdate>2019</risdate><volume>3</volume><issn>2535-0897</issn><eissn>2535-0897</eissn><abstract>Research Infrastructures (RIs) are facilities, resources and services used by scientists to perform research and support innovation. A number of EU research infrastructures [e.g. e-Science and Technology European Infrastructure for Biodiversity and Ecosystem Research (LifeWatch) European Research Iinfrastructures Consortium (ERIC); The European life-sciences Infrastructure for biological Information (ELIXIR); the European Marine Biological Resource Centre (EMBRC ERIC); the European Research Infrastructure for Imaging Technologies in Biological and Biomedical Sciences (uroBioImaging ERIC)] have been building Virtual Research Environments (VREs), which include many virtual laboratories (vLabs) offering, one stop data access to scientists, high computational capacity and collaborative research platforms in support of the requirements of the digital science. This presentation gives examples on the use of the vLabs developed by LifeWatch ERIC which have subsequently been taken up as web services by other RIs.
The RvLab operates on a high-performance computer cluster, and has been used in order to analyse various properties of taxon equality, with a focus on marine species. This taxonomic information on marine biota is organized and made publicly available through the World Register of Marine Species (WoRMS) that delivers more than 250,000 described valid species names. Although scientists consider an
equal
status (in terms of contribution to overall diversity) to each taxon used in taxonomy, biogeography, ecology and biodiversity, the question “
are all taxa equal?
” has never been tested at a global scale. We present evidence that this question can be addressed by applying relatedness indices (Taxonomic Distinctness) over the entire WoRMS metazoan tree.
The virtual micro-CT laboratory (Micro-CT vLab), which can be used by the members of the scientific community interested in the digitisation methods and biological collections, makes the micro-CT data exploration of natural history specimens freely available over the internet. Micro-CT vLab makes it possible the online exploration and dissemination of micro-CT datasets, which are only rarely made available to the public due to their very large size and a lack of dedicated online platforms supporting the interactive manipulation of 3D data. Examples of how these vLabs can be used by other RIs are provided.</abstract><cop>Sofia</cop><pub>Pensoft Publishers</pub><doi>10.3897/biss.3.37289</doi><orcidid>https://orcid.org/0000-0002-1538-0320</orcidid><orcidid>https://orcid.org/0000-0003-4994-0653</orcidid><orcidid>https://orcid.org/0000-0002-6693-2033</orcidid><orcidid>https://orcid.org/0000-0001-5106-6067</orcidid><orcidid>https://orcid.org/0000-0003-3507-6542</orcidid><orcidid>https://orcid.org/0000-0002-9143-7480</orcidid><orcidid>https://orcid.org/0000-0002-3237-4547</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Biodiversity Biogeography Collaboration Computed tomography Computer applications Data collection Infrastructure Internet Laboratories Scientists Species Taxonomy |
title | The Collaborative Potential of Research Infrastructures in Addressing Global Scientific Questions |
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