Population genetic structure and demographic history of the scallop Argopecten purpuratus from Peru and Northern Chile: implications for management and conservation of natural beds
The scallop Argopecten purpuratus is a heavily exploited resource along the coasts of Peru and north-central Chile, especially after El Niño events, when the species undergoes high increases in abundance. Little is known about its genetic structure or demographic history, two important factors to en...
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description | The scallop
Argopecten purpuratus
is a heavily exploited resource along the coasts of Peru and north-central Chile, especially after El Niño events, when the species undergoes high increases in abundance. Little is known about its genetic structure or demographic history, two important factors to ensure sustainable exploitation. We sequenced the cytochrome oxidase I and cytochrome
b
genes of 116 individuals from six localities (between 05°44′S 80°53′W and 23°31′S 70°33′W). We found high levels of genetic diversity in the analyzed populations. No geographical structuring was observed in the haplotype network, which consisted of a few central, widely distributed haplotypes, and many derived population-specific haplotypes separated by few mutations. This pattern suggests a recent population expansion and moderate to low current gene flow among populations. Mismatch analysis, neutrality tests, and a Bayesian skyline analysis confirmed the occurrence of a past event of population expansion approximately 5,000 years ago, which coincides with increasingly stronger and more frequent El Niño events. |
doi_str_mv | 10.1007/s10750-019-04048-5 |
format | Article |
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Argopecten purpuratus
is a heavily exploited resource along the coasts of Peru and north-central Chile, especially after El Niño events, when the species undergoes high increases in abundance. Little is known about its genetic structure or demographic history, two important factors to ensure sustainable exploitation. We sequenced the cytochrome oxidase I and cytochrome
b
genes of 116 individuals from six localities (between 05°44′S 80°53′W and 23°31′S 70°33′W). We found high levels of genetic diversity in the analyzed populations. No geographical structuring was observed in the haplotype network, which consisted of a few central, widely distributed haplotypes, and many derived population-specific haplotypes separated by few mutations. This pattern suggests a recent population expansion and moderate to low current gene flow among populations. Mismatch analysis, neutrality tests, and a Bayesian skyline analysis confirmed the occurrence of a past event of population expansion approximately 5,000 years ago, which coincides with increasingly stronger and more frequent El Niño events.</description><identifier>ISSN: 0018-8158</identifier><identifier>EISSN: 1573-5117</identifier><identifier>DOI: 10.1007/s10750-019-04048-5</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Analysis ; Argopecten purpuratus ; Bayesian analysis ; Biomedical and Life Sciences ; Cytochrome ; Cytochrome b ; Cytochrome oxidase ; Cytochrome oxidase I ; Cytochromes ; Demographics ; Ecology ; El Nino ; El Nino phenomena ; Exploitation ; Freshwater & Marine Ecology ; Gene flow ; Genetic aspects ; Genetic diversity ; Genetic structure ; Genetic variation ; Haplotypes ; Life Sciences ; Low currents ; Marine molluscs ; Mutation ; Population ; Population genetics ; Population growth ; Populations ; Primary Research Paper ; Probability theory ; Resource exploitation ; Zoology</subject><ispartof>Hydrobiologia, 2020, Vol.847 (1), p.11-26</ispartof><rights>Springer Nature Switzerland AG 2019</rights><rights>COPYRIGHT 2020 Springer</rights><rights>Hydrobiologia is a copyright of Springer, (2019). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c392t-3c811106c7ddf48e219cb078c37ca6485dc624d8d0841a0d7ab66a9f5888e4133</citedby><cites>FETCH-LOGICAL-c392t-3c811106c7ddf48e219cb078c37ca6485dc624d8d0841a0d7ab66a9f5888e4133</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10750-019-04048-5$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10750-019-04048-5$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27903,27904,41467,42536,51297</link.rule.ids></links><search><creatorcontrib>Acosta-Jofré, María Soledad</creatorcontrib><creatorcontrib>Sahade, Ricardo</creatorcontrib><creatorcontrib>Mendo, Jaime</creatorcontrib><creatorcontrib>González-Ittig, Raúl E.</creatorcontrib><creatorcontrib>Laudien, Jürgen</creatorcontrib><creatorcontrib>Chiappero, Marina B.</creatorcontrib><title>Population genetic structure and demographic history of the scallop Argopecten purpuratus from Peru and Northern Chile: implications for management and conservation of natural beds</title><title>Hydrobiologia</title><addtitle>Hydrobiologia</addtitle><description>The scallop
Argopecten purpuratus
is a heavily exploited resource along the coasts of Peru and north-central Chile, especially after El Niño events, when the species undergoes high increases in abundance. Little is known about its genetic structure or demographic history, two important factors to ensure sustainable exploitation. We sequenced the cytochrome oxidase I and cytochrome
b
genes of 116 individuals from six localities (between 05°44′S 80°53′W and 23°31′S 70°33′W). We found high levels of genetic diversity in the analyzed populations. No geographical structuring was observed in the haplotype network, which consisted of a few central, widely distributed haplotypes, and many derived population-specific haplotypes separated by few mutations. This pattern suggests a recent population expansion and moderate to low current gene flow among populations. Mismatch analysis, neutrality tests, and a Bayesian skyline analysis confirmed the occurrence of a past event of population expansion approximately 5,000 years ago, which coincides with increasingly stronger and more frequent El Niño events.</description><subject>Analysis</subject><subject>Argopecten purpuratus</subject><subject>Bayesian analysis</subject><subject>Biomedical and Life Sciences</subject><subject>Cytochrome</subject><subject>Cytochrome b</subject><subject>Cytochrome oxidase</subject><subject>Cytochrome oxidase I</subject><subject>Cytochromes</subject><subject>Demographics</subject><subject>Ecology</subject><subject>El Nino</subject><subject>El Nino phenomena</subject><subject>Exploitation</subject><subject>Freshwater & Marine Ecology</subject><subject>Gene flow</subject><subject>Genetic aspects</subject><subject>Genetic diversity</subject><subject>Genetic structure</subject><subject>Genetic variation</subject><subject>Haplotypes</subject><subject>Life Sciences</subject><subject>Low currents</subject><subject>Marine molluscs</subject><subject>Mutation</subject><subject>Population</subject><subject>Population genetics</subject><subject>Population growth</subject><subject>Populations</subject><subject>Primary Research Paper</subject><subject>Probability theory</subject><subject>Resource exploitation</subject><subject>Zoology</subject><issn>0018-8158</issn><issn>1573-5117</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kd2O1SAUhRujicfRF_CKxCsvOkJbCvXu5MSfSSY68eeacGC3h0kLdQPGeS8fUObUxMyNgYQEvrX23qyqesnoJaNUvImMCk5ryoaadrSTNX9U7RgXbc0ZE4-rHaVM1pJx-bR6FuMtLaKhobvq901Y86yTC55M4CE5Q2LCbFJGINpbYmEJE-r1VF5OLqaAdySMJJ2ARKPnOaxkj1NYwSTwZM1Ytk45khHDQm4A89nmU8AiQU8OJzfDW-KWdXbmXLigAcmivZ5gAZ_OvCn3gD-3zko9XzxRz-QINj6vnox6jvDi73lRfX__7tvhY339-cPVYX9dm3ZoUt0ayRijvRHWjp2Ehg3mSIU0rTC67yS3pm86Ky2VHdPUCn3sez2MXEoJHWvbi-rV5rti-JEhJnUbMvpSUjWNEEz0opeFutyoSc-gnB9DQm3KKj_nyhgwloHVvqeS84ZJXgSvHwgKk-BXmnSOUV19_fKQbTbWYIgRYVQrukXjnWJU3UevtuhViV6do1f3onYTxQL7CfBf3_9R_QFaV7TB</recordid><startdate>2020</startdate><enddate>2020</enddate><creator>Acosta-Jofré, María Soledad</creator><creator>Sahade, Ricardo</creator><creator>Mendo, Jaime</creator><creator>González-Ittig, Raúl E.</creator><creator>Laudien, Jürgen</creator><creator>Chiappero, Marina B.</creator><general>Springer International Publishing</general><general>Springer</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QH</scope><scope>7SN</scope><scope>7SS</scope><scope>7U7</scope><scope>7UA</scope><scope>88A</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F1W</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>H95</scope><scope>HCIFZ</scope><scope>L.G</scope><scope>LK8</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>RC3</scope></search><sort><creationdate>2020</creationdate><title>Population genetic structure and demographic history of the scallop Argopecten purpuratus from Peru and Northern Chile: implications for management and conservation of natural beds</title><author>Acosta-Jofré, María Soledad ; Sahade, Ricardo ; Mendo, Jaime ; González-Ittig, Raúl E. ; Laudien, Jürgen ; Chiappero, Marina B.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c392t-3c811106c7ddf48e219cb078c37ca6485dc624d8d0841a0d7ab66a9f5888e4133</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Analysis</topic><topic>Argopecten purpuratus</topic><topic>Bayesian analysis</topic><topic>Biomedical and Life Sciences</topic><topic>Cytochrome</topic><topic>Cytochrome b</topic><topic>Cytochrome oxidase</topic><topic>Cytochrome oxidase I</topic><topic>Cytochromes</topic><topic>Demographics</topic><topic>Ecology</topic><topic>El Nino</topic><topic>El Nino phenomena</topic><topic>Exploitation</topic><topic>Freshwater & Marine Ecology</topic><topic>Gene flow</topic><topic>Genetic aspects</topic><topic>Genetic diversity</topic><topic>Genetic structure</topic><topic>Genetic variation</topic><topic>Haplotypes</topic><topic>Life Sciences</topic><topic>Low currents</topic><topic>Marine molluscs</topic><topic>Mutation</topic><topic>Population</topic><topic>Population genetics</topic><topic>Population growth</topic><topic>Populations</topic><topic>Primary Research Paper</topic><topic>Probability theory</topic><topic>Resource exploitation</topic><topic>Zoology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Acosta-Jofré, María Soledad</creatorcontrib><creatorcontrib>Sahade, Ricardo</creatorcontrib><creatorcontrib>Mendo, Jaime</creatorcontrib><creatorcontrib>González-Ittig, Raúl E.</creatorcontrib><creatorcontrib>Laudien, Jürgen</creatorcontrib><creatorcontrib>Chiappero, Marina B.</creatorcontrib><collection>CrossRef</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Aqualine</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Toxicology Abstracts</collection><collection>Water Resources Abstracts</collection><collection>Biology Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Databases</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>SciTech Premium Collection</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biological Sciences</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><jtitle>Hydrobiologia</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Acosta-Jofré, María Soledad</au><au>Sahade, Ricardo</au><au>Mendo, Jaime</au><au>González-Ittig, Raúl E.</au><au>Laudien, Jürgen</au><au>Chiappero, Marina B.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Population genetic structure and demographic history of the scallop Argopecten purpuratus from Peru and Northern Chile: implications for management and conservation of natural beds</atitle><jtitle>Hydrobiologia</jtitle><stitle>Hydrobiologia</stitle><date>2020</date><risdate>2020</risdate><volume>847</volume><issue>1</issue><spage>11</spage><epage>26</epage><pages>11-26</pages><issn>0018-8158</issn><eissn>1573-5117</eissn><abstract>The scallop
Argopecten purpuratus
is a heavily exploited resource along the coasts of Peru and north-central Chile, especially after El Niño events, when the species undergoes high increases in abundance. Little is known about its genetic structure or demographic history, two important factors to ensure sustainable exploitation. We sequenced the cytochrome oxidase I and cytochrome
b
genes of 116 individuals from six localities (between 05°44′S 80°53′W and 23°31′S 70°33′W). We found high levels of genetic diversity in the analyzed populations. No geographical structuring was observed in the haplotype network, which consisted of a few central, widely distributed haplotypes, and many derived population-specific haplotypes separated by few mutations. This pattern suggests a recent population expansion and moderate to low current gene flow among populations. Mismatch analysis, neutrality tests, and a Bayesian skyline analysis confirmed the occurrence of a past event of population expansion approximately 5,000 years ago, which coincides with increasingly stronger and more frequent El Niño events.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><doi>10.1007/s10750-019-04048-5</doi><tpages>16</tpages></addata></record> |
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subjects | Analysis Argopecten purpuratus Bayesian analysis Biomedical and Life Sciences Cytochrome Cytochrome b Cytochrome oxidase Cytochrome oxidase I Cytochromes Demographics Ecology El Nino El Nino phenomena Exploitation Freshwater & Marine Ecology Gene flow Genetic aspects Genetic diversity Genetic structure Genetic variation Haplotypes Life Sciences Low currents Marine molluscs Mutation Population Population genetics Population growth Populations Primary Research Paper Probability theory Resource exploitation Zoology |
title | Population genetic structure and demographic history of the scallop Argopecten purpuratus from Peru and Northern Chile: implications for management and conservation of natural beds |
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