Genetic diversity and relationships among safflower (Carthamus tinctorius L.) analyzed by inter-simple sequence repeats (ISSRs)
Genetic diversity and relationships among 48 safflower accessions were evaluated using 22 inter-simple sequence repeats (ISSR) primers. A total of 429 bands were amplified, and 355 bands (about 82.7%) were polymorphic. Five to forty-one polymorphic bands could be amplified by each primer, with an av...
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| Veröffentlicht in: | Genetic resources and crop evolution 2007-08, Vol.54 (5), p.1043-1051 |
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| creator | Yang, Yu-Xia Wu, Wei Zheng, You-Liang Chen, Li Liu, Ren-Jian Huang, Chun-Yan |
| description | Genetic diversity and relationships among 48 safflower accessions were evaluated using 22 inter-simple sequence repeats (ISSR) primers. A total of 429 bands were amplified, and 355 bands (about 82.7%) were polymorphic. Five to forty-one polymorphic bands could be amplified by each primer, with an average of 16.1 polymorphic bands per primer. The results showed that the polymorphism of the safflower germplasm was higher at the DNA level. All the 48 accessions could be distinguished by ISSR markers and were divided into 9 groups based on ISSR GS by using UPGMA method. The genetic relationships among the accessions from different continents were closer. Comparatively, the genetic diversity of the accessions originated from Asia was higher, from Europe assembled. The results also showed that the genetic variation of accessions from Indian and Middle Eastern safflower diversity centers were relatively higher. ISSR is an effective and promising marker system for detecting genetic diversity among safflower and give some useful information on its phylogenic relationships. |
| doi_str_mv | 10.1007/s10722-006-9192-3 |
| format | Article |
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A total of 429 bands were amplified, and 355 bands (about 82.7%) were polymorphic. Five to forty-one polymorphic bands could be amplified by each primer, with an average of 16.1 polymorphic bands per primer. The results showed that the polymorphism of the safflower germplasm was higher at the DNA level. All the 48 accessions could be distinguished by ISSR markers and were divided into 9 groups based on ISSR GS by using UPGMA method. The genetic relationships among the accessions from different continents were closer. Comparatively, the genetic diversity of the accessions originated from Asia was higher, from Europe assembled. The results also showed that the genetic variation of accessions from Indian and Middle Eastern safflower diversity centers were relatively higher. ISSR is an effective and promising marker system for detecting genetic diversity among safflower and give some useful information on its phylogenic relationships.</description><identifier>ISSN: 0925-9864</identifier><identifier>EISSN: 1573-5109</identifier><identifier>DOI: 10.1007/s10722-006-9192-3</identifier><language>eng</language><publisher>Dordrecht: Dordrecht : Kluwer Academic Publishers</publisher><subject>Amplification ; Carthamus tinctorius ; Carthamus tinctorius L ; Deoxyribonucleic acid ; DNA ; Genetic diversity ; Genetic relationship ; genetic variation ; Germplasm ; ISSR ; Polymorphism ; Primers ; Simple sequence repeats</subject><ispartof>Genetic resources and crop evolution, 2007-08, Vol.54 (5), p.1043-1051</ispartof><rights>Springer Science+Business Media, Inc. 2007.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c297t-cc10002f194b28a26dfa1bb7ba4df58666205e44f098269101511fc57b4dfc493</citedby><cites>FETCH-LOGICAL-c297t-cc10002f194b28a26dfa1bb7ba4df58666205e44f098269101511fc57b4dfc493</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids></links><search><creatorcontrib>Yang, Yu-Xia</creatorcontrib><creatorcontrib>Wu, Wei</creatorcontrib><creatorcontrib>Zheng, You-Liang</creatorcontrib><creatorcontrib>Chen, Li</creatorcontrib><creatorcontrib>Liu, Ren-Jian</creatorcontrib><creatorcontrib>Huang, Chun-Yan</creatorcontrib><title>Genetic diversity and relationships among safflower (Carthamus tinctorius L.) analyzed by inter-simple sequence repeats (ISSRs)</title><title>Genetic resources and crop evolution</title><description>Genetic diversity and relationships among 48 safflower accessions were evaluated using 22 inter-simple sequence repeats (ISSR) primers. A total of 429 bands were amplified, and 355 bands (about 82.7%) were polymorphic. Five to forty-one polymorphic bands could be amplified by each primer, with an average of 16.1 polymorphic bands per primer. The results showed that the polymorphism of the safflower germplasm was higher at the DNA level. All the 48 accessions could be distinguished by ISSR markers and were divided into 9 groups based on ISSR GS by using UPGMA method. The genetic relationships among the accessions from different continents were closer. Comparatively, the genetic diversity of the accessions originated from Asia was higher, from Europe assembled. The results also showed that the genetic variation of accessions from Indian and Middle Eastern safflower diversity centers were relatively higher. ISSR is an effective and promising marker system for detecting genetic diversity among safflower and give some useful information on its phylogenic relationships.</description><subject>Amplification</subject><subject>Carthamus tinctorius</subject><subject>Carthamus tinctorius L</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Genetic diversity</subject><subject>Genetic relationship</subject><subject>genetic variation</subject><subject>Germplasm</subject><subject>ISSR</subject><subject>Polymorphism</subject><subject>Primers</subject><subject>Simple sequence repeats</subject><issn>0925-9864</issn><issn>1573-5109</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNotkEFrGzEQhUVoIG6SH5BTBb0kBzkj7Uq7OhaTpgFDoU7OQquVbIX17lYjt7iX_vXKuKcZmPcebz5C7jgsOUDziBwaIRiAYpprwaoLsuCyqZjkoD-QBWghmW5VfUU-Ir4DgG5UuyB_n_3oc3S0j798wpiP1I49TX6wOU4j7uKM1O6ncUvRhjBMv32i9yub8s7uD0hzHF2eUizrevlQvHY4_vE97Y40jtknhnE_D56i_3nwo_MlefY2I71_2Wx-4MMNuQx2QH_7f16Tt69Pr6tvbP39-WX1Zc2c0E1mzpUvQQSu6060Vqg-WN51TWfrPshWKSVA-roOoFuhNAcuOQ9ONl25u1pX1-TzOXdOU2mC2bxPh1TaohFC6lbWUqui4meVSxNi8sHMKe5tOhoO5sTZnDmbwtmcOJuqeD6dPcFOxm5TRPO2EcCrIm-VllX1D3snerY</recordid><startdate>20070801</startdate><enddate>20070801</enddate><creator>Yang, Yu-Xia</creator><creator>Wu, Wei</creator><creator>Zheng, You-Liang</creator><creator>Chen, Li</creator><creator>Liu, Ren-Jian</creator><creator>Huang, Chun-Yan</creator><general>Dordrecht : Kluwer Academic Publishers</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope></search><sort><creationdate>20070801</creationdate><title>Genetic diversity and relationships among safflower (Carthamus tinctorius L.) analyzed by inter-simple sequence repeats (ISSRs)</title><author>Yang, Yu-Xia ; Wu, Wei ; Zheng, You-Liang ; Chen, Li ; Liu, Ren-Jian ; Huang, Chun-Yan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c297t-cc10002f194b28a26dfa1bb7ba4df58666205e44f098269101511fc57b4dfc493</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Amplification</topic><topic>Carthamus tinctorius</topic><topic>Carthamus tinctorius L</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Genetic diversity</topic><topic>Genetic relationship</topic><topic>genetic variation</topic><topic>Germplasm</topic><topic>ISSR</topic><topic>Polymorphism</topic><topic>Primers</topic><topic>Simple sequence repeats</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yang, Yu-Xia</creatorcontrib><creatorcontrib>Wu, Wei</creatorcontrib><creatorcontrib>Zheng, You-Liang</creatorcontrib><creatorcontrib>Chen, Li</creatorcontrib><creatorcontrib>Liu, Ren-Jian</creatorcontrib><creatorcontrib>Huang, Chun-Yan</creatorcontrib><collection>AGRIS</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><jtitle>Genetic resources and crop evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yang, Yu-Xia</au><au>Wu, Wei</au><au>Zheng, You-Liang</au><au>Chen, Li</au><au>Liu, Ren-Jian</au><au>Huang, Chun-Yan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity and relationships among safflower (Carthamus tinctorius L.) analyzed by inter-simple sequence repeats (ISSRs)</atitle><jtitle>Genetic resources and crop evolution</jtitle><date>2007-08-01</date><risdate>2007</risdate><volume>54</volume><issue>5</issue><spage>1043</spage><epage>1051</epage><pages>1043-1051</pages><issn>0925-9864</issn><eissn>1573-5109</eissn><abstract>Genetic diversity and relationships among 48 safflower accessions were evaluated using 22 inter-simple sequence repeats (ISSR) primers. A total of 429 bands were amplified, and 355 bands (about 82.7%) were polymorphic. Five to forty-one polymorphic bands could be amplified by each primer, with an average of 16.1 polymorphic bands per primer. The results showed that the polymorphism of the safflower germplasm was higher at the DNA level. All the 48 accessions could be distinguished by ISSR markers and were divided into 9 groups based on ISSR GS by using UPGMA method. The genetic relationships among the accessions from different continents were closer. Comparatively, the genetic diversity of the accessions originated from Asia was higher, from Europe assembled. The results also showed that the genetic variation of accessions from Indian and Middle Eastern safflower diversity centers were relatively higher. ISSR is an effective and promising marker system for detecting genetic diversity among safflower and give some useful information on its phylogenic relationships.</abstract><cop>Dordrecht</cop><pub>Dordrecht : Kluwer Academic Publishers</pub><doi>10.1007/s10722-006-9192-3</doi><tpages>9</tpages></addata></record> |
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| subjects | Amplification Carthamus tinctorius Carthamus tinctorius L Deoxyribonucleic acid DNA Genetic diversity Genetic relationship genetic variation Germplasm ISSR Polymorphism Primers Simple sequence repeats |
| title | Genetic diversity and relationships among safflower (Carthamus tinctorius L.) analyzed by inter-simple sequence repeats (ISSRs) |
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