Genetic diversity in populations of the endangered medicinal plant Tetrastigma hemsleyanum revealed by ISSR and SRAP markers: implications for conservation
Genetic diversity of 27 Tetrastigma hemsleyanum accessions from wild or cultivated populations was evaluated using SRAP (sequence-related amplified polymorphism) and ISSR (inter-simple sequence repeat) markers. ISSR and SRAP analysis yielded 112 and 66 scorable amplified bands, respectively, of whic...
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| Veröffentlicht in: | Genetic resources and crop evolution 2015-10, Vol.62 (7), p.1069-1078 |
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| creator | Peng, Xin Ji, Qingyong Fan, Sanwei Zhang, Yujiong Zhang, Jiajia |
| description | Genetic diversity of 27 Tetrastigma hemsleyanum accessions from wild or cultivated populations was evaluated using SRAP (sequence-related amplified polymorphism) and ISSR (inter-simple sequence repeat) markers. ISSR and SRAP analysis yielded 112 and 66 scorable amplified bands, respectively, of which 85.71 and 77.27 % were polymorphic. ISSR revealed efficiency over SRAP due to high Shannon’s Information Index (I), Nei’s gene diversity (H), and total genetic diversity (Ht). The dendrograms showed clear clustering pattern of geographically distribution. The correlation between the coefficient matrices for the SRAP and ISSR data was high (r = 0.869, P |
| doi_str_mv | 10.1007/s10722-014-0210-6 |
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ISSR and SRAP analysis yielded 112 and 66 scorable amplified bands, respectively, of which 85.71 and 77.27 % were polymorphic. ISSR revealed efficiency over SRAP due to high Shannon’s Information Index (I), Nei’s gene diversity (H), and total genetic diversity (Ht). The dendrograms showed clear clustering pattern of geographically distribution. The correlation between the coefficient matrices for the SRAP and ISSR data was high (r = 0.869, P < 0.01). Higher level of genetic similarity was observed in intra-population than in inter-population. The average genetic similarity among cultivated populations were far above that among wild populations, the low level of gene flow, distance isolation, and asexual reproduction were likely related to the low level of differentiation among populations. The promotion of genes exchange will be very beneficial to conserve and utilize the enormous genetic variability contained in the T. hemsleyanum.</description><identifier>ISSN: 0925-9864</identifier><identifier>EISSN: 1573-5109</identifier><identifier>DOI: 10.1007/s10722-014-0210-6</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Agriculture ; Amplification ; Asexual reproduction ; Biomedical and Life Sciences ; Clustering ; Endangered plants ; Endangered populations ; Gene flow ; genes ; Genetic diversity ; Genetic variability ; genetic variation ; Geographical distribution ; Herbal medicine ; Life Sciences ; Low level ; Markers ; Medicinal plants ; microsatellite repeats ; Plant Genetics and Genomics ; Plant Physiology ; Plant Sciences ; Plant Systematics/Taxonomy/Biogeography ; Polymorphism ; Population genetics ; Populations ; Research Article ; Similarity ; Tetrastigma</subject><ispartof>Genetic resources and crop evolution, 2015-10, Vol.62 (7), p.1069-1078</ispartof><rights>Springer Science+Business Media Dordrecht 2015</rights><rights>Genetic Resources and Crop Evolution is a copyright of Springer, (2015). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c410t-cc8f6c2e37bb6c34feceb141587d1d452f8ccf301a9feaf32a2d896a855cb2ba3</citedby><cites>FETCH-LOGICAL-c410t-cc8f6c2e37bb6c34feceb141587d1d452f8ccf301a9feaf32a2d896a855cb2ba3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10722-014-0210-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10722-014-0210-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids></links><search><creatorcontrib>Peng, Xin</creatorcontrib><creatorcontrib>Ji, Qingyong</creatorcontrib><creatorcontrib>Fan, Sanwei</creatorcontrib><creatorcontrib>Zhang, Yujiong</creatorcontrib><creatorcontrib>Zhang, Jiajia</creatorcontrib><title>Genetic diversity in populations of the endangered medicinal plant Tetrastigma hemsleyanum revealed by ISSR and SRAP markers: implications for conservation</title><title>Genetic resources and crop evolution</title><addtitle>Genet Resour Crop Evol</addtitle><description>Genetic diversity of 27 Tetrastigma hemsleyanum accessions from wild or cultivated populations was evaluated using SRAP (sequence-related amplified polymorphism) and ISSR (inter-simple sequence repeat) markers. ISSR and SRAP analysis yielded 112 and 66 scorable amplified bands, respectively, of which 85.71 and 77.27 % were polymorphic. ISSR revealed efficiency over SRAP due to high Shannon’s Information Index (I), Nei’s gene diversity (H), and total genetic diversity (Ht). The dendrograms showed clear clustering pattern of geographically distribution. The correlation between the coefficient matrices for the SRAP and ISSR data was high (r = 0.869, P < 0.01). Higher level of genetic similarity was observed in intra-population than in inter-population. The average genetic similarity among cultivated populations were far above that among wild populations, the low level of gene flow, distance isolation, and asexual reproduction were likely related to the low level of differentiation among populations. The promotion of genes exchange will be very beneficial to conserve and utilize the enormous genetic variability contained in the T. hemsleyanum.</description><subject>Agriculture</subject><subject>Amplification</subject><subject>Asexual reproduction</subject><subject>Biomedical and Life Sciences</subject><subject>Clustering</subject><subject>Endangered plants</subject><subject>Endangered populations</subject><subject>Gene flow</subject><subject>genes</subject><subject>Genetic diversity</subject><subject>Genetic variability</subject><subject>genetic variation</subject><subject>Geographical distribution</subject><subject>Herbal medicine</subject><subject>Life Sciences</subject><subject>Low level</subject><subject>Markers</subject><subject>Medicinal plants</subject><subject>microsatellite repeats</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Plant Systematics/Taxonomy/Biogeography</subject><subject>Polymorphism</subject><subject>Population genetics</subject><subject>Populations</subject><subject>Research Article</subject><subject>Similarity</subject><subject>Tetrastigma</subject><issn>0925-9864</issn><issn>1573-5109</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp9kcFu1DAQhi0EEkvhAThhiXOo7cSOw62qaKlUCdRtz9bEGW9dEifY3pX2WXhZvKQSt55mNPq_Gf3zE_KRsy-csfY8cdYKUTHeVExwVqlXZMNlW1eSs-412bBOyKrTqnlL3qX0xBjrWqU35M81Bsze0sEfMCafj9QHuszLfoTs55Do7Gh-RIphgLDDiAOdcPDWBxjpMkLI9B5zhJT9bgL6iFMa8QhhP9GIB4SxAP2R3my3dxTCQLd3Fz_pBPFXufaV-mkZvX2-5OZIbWkwHv5N3pM3DsaEH57rGXm4-nZ_-b26_XF9c3lxW9mGs1xZq52yAuu275WtG4cWe95wqduBD40UTlvrasahcwiuFiAG3SnQUtpe9FCfkc_r3iXOv_eYsnma97H4S0YIWf4kpW6Kiq8qG-eUIjqzRF-MHA1n5pSBWTMwJQNzysCowoiVSUV7-t7_zS9Bn1bIwWxgF30yD1vBuGKM10JpVf8FZRuW8A</recordid><startdate>20151001</startdate><enddate>20151001</enddate><creator>Peng, Xin</creator><creator>Ji, Qingyong</creator><creator>Fan, Sanwei</creator><creator>Zhang, Yujiong</creator><creator>Zhang, Jiajia</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope></search><sort><creationdate>20151001</creationdate><title>Genetic diversity in populations of the endangered medicinal plant Tetrastigma hemsleyanum revealed by ISSR and SRAP markers: implications for conservation</title><author>Peng, Xin ; Ji, Qingyong ; Fan, Sanwei ; Zhang, Yujiong ; Zhang, Jiajia</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c410t-cc8f6c2e37bb6c34feceb141587d1d452f8ccf301a9feaf32a2d896a855cb2ba3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Agriculture</topic><topic>Amplification</topic><topic>Asexual reproduction</topic><topic>Biomedical and Life Sciences</topic><topic>Clustering</topic><topic>Endangered plants</topic><topic>Endangered populations</topic><topic>Gene flow</topic><topic>genes</topic><topic>Genetic diversity</topic><topic>Genetic variability</topic><topic>genetic variation</topic><topic>Geographical distribution</topic><topic>Herbal medicine</topic><topic>Life Sciences</topic><topic>Low level</topic><topic>Markers</topic><topic>Medicinal plants</topic><topic>microsatellite repeats</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Plant Systematics/Taxonomy/Biogeography</topic><topic>Polymorphism</topic><topic>Population genetics</topic><topic>Populations</topic><topic>Research Article</topic><topic>Similarity</topic><topic>Tetrastigma</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Peng, Xin</creatorcontrib><creatorcontrib>Ji, Qingyong</creatorcontrib><creatorcontrib>Fan, Sanwei</creatorcontrib><creatorcontrib>Zhang, Yujiong</creatorcontrib><creatorcontrib>Zhang, Jiajia</creatorcontrib><collection>AGRIS</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><jtitle>Genetic resources and crop evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Peng, Xin</au><au>Ji, Qingyong</au><au>Fan, Sanwei</au><au>Zhang, Yujiong</au><au>Zhang, Jiajia</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity in populations of the endangered medicinal plant Tetrastigma hemsleyanum revealed by ISSR and SRAP markers: implications for conservation</atitle><jtitle>Genetic resources and crop evolution</jtitle><stitle>Genet Resour Crop Evol</stitle><date>2015-10-01</date><risdate>2015</risdate><volume>62</volume><issue>7</issue><spage>1069</spage><epage>1078</epage><pages>1069-1078</pages><issn>0925-9864</issn><eissn>1573-5109</eissn><abstract>Genetic diversity of 27 Tetrastigma hemsleyanum accessions from wild or cultivated populations was evaluated using SRAP (sequence-related amplified polymorphism) and ISSR (inter-simple sequence repeat) markers. ISSR and SRAP analysis yielded 112 and 66 scorable amplified bands, respectively, of which 85.71 and 77.27 % were polymorphic. ISSR revealed efficiency over SRAP due to high Shannon’s Information Index (I), Nei’s gene diversity (H), and total genetic diversity (Ht). The dendrograms showed clear clustering pattern of geographically distribution. The correlation between the coefficient matrices for the SRAP and ISSR data was high (r = 0.869, P < 0.01). Higher level of genetic similarity was observed in intra-population than in inter-population. The average genetic similarity among cultivated populations were far above that among wild populations, the low level of gene flow, distance isolation, and asexual reproduction were likely related to the low level of differentiation among populations. The promotion of genes exchange will be very beneficial to conserve and utilize the enormous genetic variability contained in the T. hemsleyanum.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s10722-014-0210-6</doi><tpages>10</tpages></addata></record> |
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| subjects | Agriculture Amplification Asexual reproduction Biomedical and Life Sciences Clustering Endangered plants Endangered populations Gene flow genes Genetic diversity Genetic variability genetic variation Geographical distribution Herbal medicine Life Sciences Low level Markers Medicinal plants microsatellite repeats Plant Genetics and Genomics Plant Physiology Plant Sciences Plant Systematics/Taxonomy/Biogeography Polymorphism Population genetics Populations Research Article Similarity Tetrastigma |
| title | Genetic diversity in populations of the endangered medicinal plant Tetrastigma hemsleyanum revealed by ISSR and SRAP markers: implications for conservation |
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