Morpho-taxonomical and molecular assessment of Musa genotypes from north-east India by morphological and inter-retrotransposon amplified polymorphism markers
The states of north-eastern region of India are home to several wild and cultivated bananas. There is a dearth of information on the genetic diversity of Musa resources of the region to assist in crop improvement programmes. Twenty-five genotypes of Musaceae accessions including one Ensete species m...
Gespeichert in:
| Veröffentlicht in: | Plant systematics and evolution 2015-02, Vol.301 (2), p.563-575 |
|---|---|
| Hauptverfasser: | , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 575 |
|---|---|
| container_issue | 2 |
| container_start_page | 563 |
| container_title | Plant systematics and evolution |
| container_volume | 301 |
| creator | Singh, Warepam Amuchou Singh, Nandeibam Samarjit Handique, Pratap Jyoti Devi, Huidrom Sunitibala |
| description | The states of north-eastern region of India are home to several wild and cultivated bananas. There is a dearth of information on the genetic diversity of Musa resources of the region to assist in crop improvement programmes. Twenty-five genotypes of Musaceae accessions including one Ensete species maintained at Institute of Bioresources and Sustainable Development (IBSD), Imphal, were characterized based on 60 morpho-taxonomic characters and seven inter-retrotransposon amplified polymorphism (IRAP) primer combinations. The morphological data were presented in the form of hierarchical clusters and principal components. Hierarchically, the Musa genotypes can be grouped into distinctive clusters, and while the first four principal components could explain 58.66 % of variation of the total morphological traits studied. A total of 337 amplicons were generated using 12 IRAP primer combinations with an average percentage polymorphism of 96.12. The molecular markers used in this study could reveal intra- and inter-group diversity among the genotypes with similarity coefficients ranging from 0.16 to 0.90. It could also differentiate the clusters of all the edible cultivated Musa genotypes from the wild/semi-wild ancestors. Thus, the chosen parameters seem to be especially important in the varietal or genotype identifications. |
| doi_str_mv | 10.1007/s00606-014-1094-9 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_journals_2259358932</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2259358932</sourcerecordid><originalsourceid>FETCH-LOGICAL-c410t-f76ea2f4d0b189505d96282829b218de2995165fe2686741f463b8d0074e56203</originalsourceid><addsrcrecordid>eNp9kU9v1DAQxS1EJZbSD8AJS5wNYyd24iOq-FOpFQfas-Xd2NuUxBM8Xon9MP2ueAmit2oOc3m_N0_zGHsr4YME6D4SgAEjQLZCgm2FfcE20kgtjJTwkm2g6XqhjO1esddEDwCyM223YY83mJd7FMX_xoTzuPMT92ngM05hd5h85p4oEM0hFY6R3xzI831IWI5LIB4zzjxhLvcieCr8Kg2j59tj5U-2E-7_O46phCxyKBlL9okWJEzcz8s0xjEMfMHp-Jcaaeazzz9DpjfsLPqJwsW_fc7uvny-vfwmrr9_vbr8dC12rYQiYmeCV7EdYCt7q0EP1qi-jt0q2Q9BWaul0TEo05uulbE1zbYf6t_aoI2C5py9X32XjL8OgYp7wENO9aRTSttG97ZRVSVX1S4jUQ7RLXmsSY9Ogju14NYWXG3BnVpwtjJqZahq0z7kJ-fnoHcrFD06v88jubsfCqQGqGEBmuYPx2-Wtg</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2259358932</pqid></control><display><type>article</type><title>Morpho-taxonomical and molecular assessment of Musa genotypes from north-east India by morphological and inter-retrotransposon amplified polymorphism markers</title><source>Jstor Complete Legacy</source><source>SpringerLink Journals</source><creator>Singh, Warepam Amuchou ; Singh, Nandeibam Samarjit ; Handique, Pratap Jyoti ; Devi, Huidrom Sunitibala</creator><creatorcontrib>Singh, Warepam Amuchou ; Singh, Nandeibam Samarjit ; Handique, Pratap Jyoti ; Devi, Huidrom Sunitibala</creatorcontrib><description>The states of north-eastern region of India are home to several wild and cultivated bananas. There is a dearth of information on the genetic diversity of Musa resources of the region to assist in crop improvement programmes. Twenty-five genotypes of Musaceae accessions including one Ensete species maintained at Institute of Bioresources and Sustainable Development (IBSD), Imphal, were characterized based on 60 morpho-taxonomic characters and seven inter-retrotransposon amplified polymorphism (IRAP) primer combinations. The morphological data were presented in the form of hierarchical clusters and principal components. Hierarchically, the Musa genotypes can be grouped into distinctive clusters, and while the first four principal components could explain 58.66 % of variation of the total morphological traits studied. A total of 337 amplicons were generated using 12 IRAP primer combinations with an average percentage polymorphism of 96.12. The molecular markers used in this study could reveal intra- and inter-group diversity among the genotypes with similarity coefficients ranging from 0.16 to 0.90. It could also differentiate the clusters of all the edible cultivated Musa genotypes from the wild/semi-wild ancestors. Thus, the chosen parameters seem to be especially important in the varietal or genotype identifications.</description><identifier>ISSN: 0378-2697</identifier><identifier>EISSN: 1615-6110</identifier><identifier>EISSN: 2199-6881</identifier><identifier>DOI: 10.1007/s00606-014-1094-9</identifier><language>eng</language><publisher>Vienna: Springer-Verlag</publisher><subject>Amplification ; ancestry ; Bananas ; Biomedical and Life Sciences ; Clusters ; Crop improvement ; Cultivation ; Ensete ; Fruit cultivation ; Gene polymorphism ; Genetic diversity ; genetic markers ; genetic variation ; genotype ; Genotypes ; Life Sciences ; Markers ; Morphology ; Musa ; Original Article ; Parameter identification ; Plant Anatomy/Development ; Plant Ecology ; Plant Sciences ; Plant Systematics/Taxonomy/Biogeography ; plant taxonomy ; Polymorphism ; Sustainable development</subject><ispartof>Plant systematics and evolution, 2015-02, Vol.301 (2), p.563-575</ispartof><rights>Springer-Verlag Wien 2014</rights><rights>Plant Systematics and Evolution is a copyright of Springer, (2014). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c410t-f76ea2f4d0b189505d96282829b218de2995165fe2686741f463b8d0074e56203</citedby><cites>FETCH-LOGICAL-c410t-f76ea2f4d0b189505d96282829b218de2995165fe2686741f463b8d0074e56203</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00606-014-1094-9$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00606-014-1094-9$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids></links><search><creatorcontrib>Singh, Warepam Amuchou</creatorcontrib><creatorcontrib>Singh, Nandeibam Samarjit</creatorcontrib><creatorcontrib>Handique, Pratap Jyoti</creatorcontrib><creatorcontrib>Devi, Huidrom Sunitibala</creatorcontrib><title>Morpho-taxonomical and molecular assessment of Musa genotypes from north-east India by morphological and inter-retrotransposon amplified polymorphism markers</title><title>Plant systematics and evolution</title><addtitle>Plant Syst Evol</addtitle><description>The states of north-eastern region of India are home to several wild and cultivated bananas. There is a dearth of information on the genetic diversity of Musa resources of the region to assist in crop improvement programmes. Twenty-five genotypes of Musaceae accessions including one Ensete species maintained at Institute of Bioresources and Sustainable Development (IBSD), Imphal, were characterized based on 60 morpho-taxonomic characters and seven inter-retrotransposon amplified polymorphism (IRAP) primer combinations. The morphological data were presented in the form of hierarchical clusters and principal components. Hierarchically, the Musa genotypes can be grouped into distinctive clusters, and while the first four principal components could explain 58.66 % of variation of the total morphological traits studied. A total of 337 amplicons were generated using 12 IRAP primer combinations with an average percentage polymorphism of 96.12. The molecular markers used in this study could reveal intra- and inter-group diversity among the genotypes with similarity coefficients ranging from 0.16 to 0.90. It could also differentiate the clusters of all the edible cultivated Musa genotypes from the wild/semi-wild ancestors. Thus, the chosen parameters seem to be especially important in the varietal or genotype identifications.</description><subject>Amplification</subject><subject>ancestry</subject><subject>Bananas</subject><subject>Biomedical and Life Sciences</subject><subject>Clusters</subject><subject>Crop improvement</subject><subject>Cultivation</subject><subject>Ensete</subject><subject>Fruit cultivation</subject><subject>Gene polymorphism</subject><subject>Genetic diversity</subject><subject>genetic markers</subject><subject>genetic variation</subject><subject>genotype</subject><subject>Genotypes</subject><subject>Life Sciences</subject><subject>Markers</subject><subject>Morphology</subject><subject>Musa</subject><subject>Original Article</subject><subject>Parameter identification</subject><subject>Plant Anatomy/Development</subject><subject>Plant Ecology</subject><subject>Plant Sciences</subject><subject>Plant Systematics/Taxonomy/Biogeography</subject><subject>plant taxonomy</subject><subject>Polymorphism</subject><subject>Sustainable development</subject><issn>0378-2697</issn><issn>1615-6110</issn><issn>2199-6881</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp9kU9v1DAQxS1EJZbSD8AJS5wNYyd24iOq-FOpFQfas-Xd2NuUxBM8Xon9MP2ueAmit2oOc3m_N0_zGHsr4YME6D4SgAEjQLZCgm2FfcE20kgtjJTwkm2g6XqhjO1esddEDwCyM223YY83mJd7FMX_xoTzuPMT92ngM05hd5h85p4oEM0hFY6R3xzI831IWI5LIB4zzjxhLvcieCr8Kg2j59tj5U-2E-7_O46phCxyKBlL9okWJEzcz8s0xjEMfMHp-Jcaaeazzz9DpjfsLPqJwsW_fc7uvny-vfwmrr9_vbr8dC12rYQiYmeCV7EdYCt7q0EP1qi-jt0q2Q9BWaul0TEo05uulbE1zbYf6t_aoI2C5py9X32XjL8OgYp7wENO9aRTSttG97ZRVSVX1S4jUQ7RLXmsSY9Ogju14NYWXG3BnVpwtjJqZahq0z7kJ-fnoHcrFD06v88jubsfCqQGqGEBmuYPx2-Wtg</recordid><startdate>20150201</startdate><enddate>20150201</enddate><creator>Singh, Warepam Amuchou</creator><creator>Singh, Nandeibam Samarjit</creator><creator>Handique, Pratap Jyoti</creator><creator>Devi, Huidrom Sunitibala</creator><general>Springer-Verlag</general><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>PHGZM</scope><scope>PHGZT</scope><scope>PKEHL</scope><scope>PQEST</scope><scope>PQGLB</scope><scope>PQQKQ</scope><scope>PQUKI</scope></search><sort><creationdate>20150201</creationdate><title>Morpho-taxonomical and molecular assessment of Musa genotypes from north-east India by morphological and inter-retrotransposon amplified polymorphism markers</title><author>Singh, Warepam Amuchou ; Singh, Nandeibam Samarjit ; Handique, Pratap Jyoti ; Devi, Huidrom Sunitibala</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c410t-f76ea2f4d0b189505d96282829b218de2995165fe2686741f463b8d0074e56203</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Amplification</topic><topic>ancestry</topic><topic>Bananas</topic><topic>Biomedical and Life Sciences</topic><topic>Clusters</topic><topic>Crop improvement</topic><topic>Cultivation</topic><topic>Ensete</topic><topic>Fruit cultivation</topic><topic>Gene polymorphism</topic><topic>Genetic diversity</topic><topic>genetic markers</topic><topic>genetic variation</topic><topic>genotype</topic><topic>Genotypes</topic><topic>Life Sciences</topic><topic>Markers</topic><topic>Morphology</topic><topic>Musa</topic><topic>Original Article</topic><topic>Parameter identification</topic><topic>Plant Anatomy/Development</topic><topic>Plant Ecology</topic><topic>Plant Sciences</topic><topic>Plant Systematics/Taxonomy/Biogeography</topic><topic>plant taxonomy</topic><topic>Polymorphism</topic><topic>Sustainable development</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Singh, Warepam Amuchou</creatorcontrib><creatorcontrib>Singh, Nandeibam Samarjit</creatorcontrib><creatorcontrib>Handique, Pratap Jyoti</creatorcontrib><creatorcontrib>Devi, Huidrom Sunitibala</creatorcontrib><collection>AGRIS</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection (ProQuest)</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>ProQuest Central (New)</collection><collection>ProQuest One Academic (New)</collection><collection>ProQuest One Academic Middle East (New)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Applied & Life Sciences</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><jtitle>Plant systematics and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Singh, Warepam Amuchou</au><au>Singh, Nandeibam Samarjit</au><au>Handique, Pratap Jyoti</au><au>Devi, Huidrom Sunitibala</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Morpho-taxonomical and molecular assessment of Musa genotypes from north-east India by morphological and inter-retrotransposon amplified polymorphism markers</atitle><jtitle>Plant systematics and evolution</jtitle><stitle>Plant Syst Evol</stitle><date>2015-02-01</date><risdate>2015</risdate><volume>301</volume><issue>2</issue><spage>563</spage><epage>575</epage><pages>563-575</pages><issn>0378-2697</issn><eissn>1615-6110</eissn><eissn>2199-6881</eissn><abstract>The states of north-eastern region of India are home to several wild and cultivated bananas. There is a dearth of information on the genetic diversity of Musa resources of the region to assist in crop improvement programmes. Twenty-five genotypes of Musaceae accessions including one Ensete species maintained at Institute of Bioresources and Sustainable Development (IBSD), Imphal, were characterized based on 60 morpho-taxonomic characters and seven inter-retrotransposon amplified polymorphism (IRAP) primer combinations. The morphological data were presented in the form of hierarchical clusters and principal components. Hierarchically, the Musa genotypes can be grouped into distinctive clusters, and while the first four principal components could explain 58.66 % of variation of the total morphological traits studied. A total of 337 amplicons were generated using 12 IRAP primer combinations with an average percentage polymorphism of 96.12. The molecular markers used in this study could reveal intra- and inter-group diversity among the genotypes with similarity coefficients ranging from 0.16 to 0.90. It could also differentiate the clusters of all the edible cultivated Musa genotypes from the wild/semi-wild ancestors. Thus, the chosen parameters seem to be especially important in the varietal or genotype identifications.</abstract><cop>Vienna</cop><pub>Springer-Verlag</pub><doi>10.1007/s00606-014-1094-9</doi><tpages>13</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0378-2697 |
| ispartof | Plant systematics and evolution, 2015-02, Vol.301 (2), p.563-575 |
| issn | 0378-2697 1615-6110 2199-6881 |
| language | eng |
| recordid | cdi_proquest_journals_2259358932 |
| source | Jstor Complete Legacy; SpringerLink Journals |
| subjects | Amplification ancestry Bananas Biomedical and Life Sciences Clusters Crop improvement Cultivation Ensete Fruit cultivation Gene polymorphism Genetic diversity genetic markers genetic variation genotype Genotypes Life Sciences Markers Morphology Musa Original Article Parameter identification Plant Anatomy/Development Plant Ecology Plant Sciences Plant Systematics/Taxonomy/Biogeography plant taxonomy Polymorphism Sustainable development |
| title | Morpho-taxonomical and molecular assessment of Musa genotypes from north-east India by morphological and inter-retrotransposon amplified polymorphism markers |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-19T01%3A29%3A11IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Morpho-taxonomical%20and%20molecular%20assessment%20of%20Musa%20genotypes%20from%20north-east%20India%20by%20morphological%20and%20inter-retrotransposon%20amplified%20polymorphism%20markers&rft.jtitle=Plant%20systematics%20and%20evolution&rft.au=Singh,%20Warepam%20Amuchou&rft.date=2015-02-01&rft.volume=301&rft.issue=2&rft.spage=563&rft.epage=575&rft.pages=563-575&rft.issn=0378-2697&rft.eissn=1615-6110&rft_id=info:doi/10.1007/s00606-014-1094-9&rft_dat=%3Cproquest_cross%3E2259358932%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2259358932&rft_id=info:pmid/&rfr_iscdi=true |