Chemical and genetic variability of selected Turkish oregano (Origanum onites L.) clones
Turkish oregano (Origanum onites L.) is a major aromatic plant that belongs to Labiatae family. In this work fourteen Turkish oregano clones have been characterized chemically and genetically. Essential oil obtained by hydro-distillation was characterized by gas chromatography. Genetic variation was...
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| Veröffentlicht in: | Plant systematics and evolution 2010-09, Vol.288 (3-4), p.157-165 |
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| container_title | Plant systematics and evolution |
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| creator | Tonk, Fatma Aykut Yüce, Süer Bayram, Emine Akçali Giachino, R. Refika Sönmez, Çiğdem Telci, İsa Furan, Mehmet Alp |
| description | Turkish oregano (Origanum onites L.) is a major aromatic plant that belongs to Labiatae family. In this work fourteen Turkish oregano clones have been characterized chemically and genetically. Essential oil obtained by hydro-distillation was characterized by gas chromatography. Genetic variation was determined by use of random amplified polymorphic DNA (RAPD) markers. Variation of essential oils in the selected clones was subjected to cluster analysis, and two chemotypes, carvacrol and thymol, were identified. Carvacrol was found to be the main component in all clones except clone-661, the main component of which was thymol. The oregano clones were divided into three main groups by clustering on the basis of RAPD markers. Genetic similarity values among the oregano clones ranged between 0.49 and 0.73 which was indicative of a low level of genetic variation. Clones originating from locations close to each other had similar RAPD markers. Correlation analysis of the genetic distance matrix and the Euclidian distance matrix revealed no significant correlation between them. The results also indicated that there is no relationship between genetic structure of the selected clones and essential oil composition. |
| doi_str_mv | 10.1007/s00606-010-0320-3 |
| format | Article |
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Refika ; Sönmez, Çiğdem ; Telci, İsa ; Furan, Mehmet Alp</creator><creatorcontrib>Tonk, Fatma Aykut ; Yüce, Süer ; Bayram, Emine ; Akçali Giachino, R. Refika ; Sönmez, Çiğdem ; Telci, İsa ; Furan, Mehmet Alp</creatorcontrib><description>Turkish oregano (Origanum onites L.) is a major aromatic plant that belongs to Labiatae family. In this work fourteen Turkish oregano clones have been characterized chemically and genetically. Essential oil obtained by hydro-distillation was characterized by gas chromatography. Genetic variation was determined by use of random amplified polymorphic DNA (RAPD) markers. Variation of essential oils in the selected clones was subjected to cluster analysis, and two chemotypes, carvacrol and thymol, were identified. Carvacrol was found to be the main component in all clones except clone-661, the main component of which was thymol. The oregano clones were divided into three main groups by clustering on the basis of RAPD markers. Genetic similarity values among the oregano clones ranged between 0.49 and 0.73 which was indicative of a low level of genetic variation. Clones originating from locations close to each other had similar RAPD markers. Correlation analysis of the genetic distance matrix and the Euclidian distance matrix revealed no significant correlation between them. The results also indicated that there is no relationship between genetic structure of the selected clones and essential oil composition.</description><identifier>ISSN: 0378-2697</identifier><identifier>EISSN: 1615-6110</identifier><identifier>EISSN: 2199-6881</identifier><identifier>DOI: 10.1007/s00606-010-0320-3</identifier><language>eng</language><publisher>Vienna: Vienna : Springer Vienna</publisher><subject>Biological taxonomies ; Biomedical and Life Sciences ; Carvacrol ; Chemical composition ; Cloning ; Cluster analysis ; Clustering ; Correlation analysis ; Correlation coefficients ; Deoxyribonucleic acid ; Distillation ; DNA ; Essential oils ; Gas chromatography ; Genetic analysis ; Genetic distance ; Genetic diversity ; Genetic structure ; Genetic variability ; Genetic variation ; Life Sciences ; Low level ; Markers ; Medical genetics ; Oils & fats ; Oregano ; Organic chemistry ; Origanum onites ; Origanum onites L ; Original Article ; Plant Anatomy/Development ; Plant Ecology ; Plant Sciences ; Plant Systematics/Taxonomy/Biogeography ; Plants ; Polymerase chain reaction ; Random amplified polymorphic DNA ; RAPD ; Taxa ; Thymol</subject><ispartof>Plant systematics and evolution, 2010-09, Vol.288 (3-4), p.157-165</ispartof><rights>Springer-Verlag 2010</rights><rights>Plant Systematics and Evolution is a copyright of Springer, (2010). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c362t-888e094d4b24bd57c693dd3a20bb7d147da7f3ae5e4938c08ea91257cb3b41023</citedby><cites>FETCH-LOGICAL-c362t-888e094d4b24bd57c693dd3a20bb7d147da7f3ae5e4938c08ea91257cb3b41023</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/23673209$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/23673209$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,776,780,799,27903,27904,41467,42536,51298,57996,58229</link.rule.ids></links><search><creatorcontrib>Tonk, Fatma Aykut</creatorcontrib><creatorcontrib>Yüce, Süer</creatorcontrib><creatorcontrib>Bayram, Emine</creatorcontrib><creatorcontrib>Akçali Giachino, R. Refika</creatorcontrib><creatorcontrib>Sönmez, Çiğdem</creatorcontrib><creatorcontrib>Telci, İsa</creatorcontrib><creatorcontrib>Furan, Mehmet Alp</creatorcontrib><title>Chemical and genetic variability of selected Turkish oregano (Origanum onites L.) clones</title><title>Plant systematics and evolution</title><addtitle>Plant Syst Evol</addtitle><description>Turkish oregano (Origanum onites L.) is a major aromatic plant that belongs to Labiatae family. In this work fourteen Turkish oregano clones have been characterized chemically and genetically. Essential oil obtained by hydro-distillation was characterized by gas chromatography. Genetic variation was determined by use of random amplified polymorphic DNA (RAPD) markers. Variation of essential oils in the selected clones was subjected to cluster analysis, and two chemotypes, carvacrol and thymol, were identified. Carvacrol was found to be the main component in all clones except clone-661, the main component of which was thymol. The oregano clones were divided into three main groups by clustering on the basis of RAPD markers. Genetic similarity values among the oregano clones ranged between 0.49 and 0.73 which was indicative of a low level of genetic variation. Clones originating from locations close to each other had similar RAPD markers. Correlation analysis of the genetic distance matrix and the Euclidian distance matrix revealed no significant correlation between them. The results also indicated that there is no relationship between genetic structure of the selected clones and essential oil composition.</description><subject>Biological taxonomies</subject><subject>Biomedical and Life Sciences</subject><subject>Carvacrol</subject><subject>Chemical composition</subject><subject>Cloning</subject><subject>Cluster analysis</subject><subject>Clustering</subject><subject>Correlation analysis</subject><subject>Correlation coefficients</subject><subject>Deoxyribonucleic acid</subject><subject>Distillation</subject><subject>DNA</subject><subject>Essential oils</subject><subject>Gas chromatography</subject><subject>Genetic analysis</subject><subject>Genetic distance</subject><subject>Genetic diversity</subject><subject>Genetic structure</subject><subject>Genetic variability</subject><subject>Genetic variation</subject><subject>Life Sciences</subject><subject>Low level</subject><subject>Markers</subject><subject>Medical genetics</subject><subject>Oils & fats</subject><subject>Oregano</subject><subject>Organic chemistry</subject><subject>Origanum onites</subject><subject>Origanum onites L</subject><subject>Original Article</subject><subject>Plant Anatomy/Development</subject><subject>Plant Ecology</subject><subject>Plant Sciences</subject><subject>Plant Systematics/Taxonomy/Biogeography</subject><subject>Plants</subject><subject>Polymerase chain reaction</subject><subject>Random amplified polymorphic DNA</subject><subject>RAPD</subject><subject>Taxa</subject><subject>Thymol</subject><issn>0378-2697</issn><issn>1615-6110</issn><issn>2199-6881</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kE9LxDAQxYMouK5-AA9iwIseqpOkTdKjLP6DBQ_ugreQttM1a7fRpCv47Y1U9OZpBub33mMeIccMLhmAuooAEmQGDDIQHDKxQyZMsiKTjMEumYBQOuOyVPvkIMY1AFMyVxPyPHvBjattR23f0BX2OLiaftjgbOU6N3xS39KIHdYDNnSxDa8uvlAfcGV7T88fg0vLdkN97waMdH55QevO9xgPyV5ru4hHP3NKlrc3i9l9Nn-8e5hdz7NaSD5kWmuEMm_yiudVU6halqJphOVQVaphuWqsaoXFAvNS6Bo02pLxxFWiyhlwMSVno-9b8O9bjINZ-23oU6ThvChFIXOuE8VGqg4-xoCteQtuY8OnYWC-CzRjgSYVaL4LNCJp-KiJie1XGP6c_xOdjKJ1HHz4TeFCqgSU6X463lvrjV0FF83yiQMTwLQWIn3_BUpphPY</recordid><startdate>20100901</startdate><enddate>20100901</enddate><creator>Tonk, Fatma Aykut</creator><creator>Yüce, Süer</creator><creator>Bayram, Emine</creator><creator>Akçali Giachino, R. 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Refika ; Sönmez, Çiğdem ; Telci, İsa ; Furan, Mehmet Alp</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c362t-888e094d4b24bd57c693dd3a20bb7d147da7f3ae5e4938c08ea91257cb3b41023</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Biological taxonomies</topic><topic>Biomedical and Life Sciences</topic><topic>Carvacrol</topic><topic>Chemical composition</topic><topic>Cloning</topic><topic>Cluster analysis</topic><topic>Clustering</topic><topic>Correlation analysis</topic><topic>Correlation coefficients</topic><topic>Deoxyribonucleic acid</topic><topic>Distillation</topic><topic>DNA</topic><topic>Essential oils</topic><topic>Gas chromatography</topic><topic>Genetic analysis</topic><topic>Genetic distance</topic><topic>Genetic diversity</topic><topic>Genetic structure</topic><topic>Genetic variability</topic><topic>Genetic variation</topic><topic>Life Sciences</topic><topic>Low level</topic><topic>Markers</topic><topic>Medical genetics</topic><topic>Oils & fats</topic><topic>Oregano</topic><topic>Organic chemistry</topic><topic>Origanum onites</topic><topic>Origanum onites L</topic><topic>Original Article</topic><topic>Plant Anatomy/Development</topic><topic>Plant Ecology</topic><topic>Plant Sciences</topic><topic>Plant Systematics/Taxonomy/Biogeography</topic><topic>Plants</topic><topic>Polymerase chain reaction</topic><topic>Random amplified polymorphic DNA</topic><topic>RAPD</topic><topic>Taxa</topic><topic>Thymol</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tonk, Fatma Aykut</creatorcontrib><creatorcontrib>Yüce, Süer</creatorcontrib><creatorcontrib>Bayram, Emine</creatorcontrib><creatorcontrib>Akçali Giachino, R. 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Refika</au><au>Sönmez, Çiğdem</au><au>Telci, İsa</au><au>Furan, Mehmet Alp</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Chemical and genetic variability of selected Turkish oregano (Origanum onites L.) clones</atitle><jtitle>Plant systematics and evolution</jtitle><stitle>Plant Syst Evol</stitle><date>2010-09-01</date><risdate>2010</risdate><volume>288</volume><issue>3-4</issue><spage>157</spage><epage>165</epage><pages>157-165</pages><issn>0378-2697</issn><eissn>1615-6110</eissn><eissn>2199-6881</eissn><abstract>Turkish oregano (Origanum onites L.) is a major aromatic plant that belongs to Labiatae family. In this work fourteen Turkish oregano clones have been characterized chemically and genetically. Essential oil obtained by hydro-distillation was characterized by gas chromatography. Genetic variation was determined by use of random amplified polymorphic DNA (RAPD) markers. Variation of essential oils in the selected clones was subjected to cluster analysis, and two chemotypes, carvacrol and thymol, were identified. Carvacrol was found to be the main component in all clones except clone-661, the main component of which was thymol. The oregano clones were divided into three main groups by clustering on the basis of RAPD markers. Genetic similarity values among the oregano clones ranged between 0.49 and 0.73 which was indicative of a low level of genetic variation. Clones originating from locations close to each other had similar RAPD markers. Correlation analysis of the genetic distance matrix and the Euclidian distance matrix revealed no significant correlation between them. The results also indicated that there is no relationship between genetic structure of the selected clones and essential oil composition.</abstract><cop>Vienna</cop><pub>Vienna : Springer Vienna</pub><doi>10.1007/s00606-010-0320-3</doi><tpages>9</tpages></addata></record> |
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| ispartof | Plant systematics and evolution, 2010-09, Vol.288 (3-4), p.157-165 |
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| subjects | Biological taxonomies Biomedical and Life Sciences Carvacrol Chemical composition Cloning Cluster analysis Clustering Correlation analysis Correlation coefficients Deoxyribonucleic acid Distillation DNA Essential oils Gas chromatography Genetic analysis Genetic distance Genetic diversity Genetic structure Genetic variability Genetic variation Life Sciences Low level Markers Medical genetics Oils & fats Oregano Organic chemistry Origanum onites Origanum onites L Original Article Plant Anatomy/Development Plant Ecology Plant Sciences Plant Systematics/Taxonomy/Biogeography Plants Polymerase chain reaction Random amplified polymorphic DNA RAPD Taxa Thymol |
| title | Chemical and genetic variability of selected Turkish oregano (Origanum onites L.) clones |
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