The phylogeny and new classification of the genus Onobrychis (Fabaceae-Hedysareae): evidence from molecular data
The present study was conducted to analyze the phylogenetic status of the genus Onobrychis and to evaluate the monophyly of its subgenera and sections and relationship among them. We sequenced the nuclear ribosomal DNA internal transcribed spacer (nrDNA ITS) and three chloroplast regions trnL-F, rpl...
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Veröffentlicht in: | Plant systematics and evolution 2016-12, Vol.302 (10), p.1445-1456 |
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creator | Amirahmadi, Atefe Kazempour-Osaloo, Shahrokh Kaveh, Akram Maassoumi, Ali A. Naderi, Reza |
description | The present study was conducted to analyze the phylogenetic status of the genus Onobrychis and to evaluate the monophyly of its subgenera and sections and relationship among them. We sequenced the nuclear ribosomal DNA internal transcribed spacer (nrDNA ITS) and three chloroplast regions trnL-F, rpl32/rpl32-trnL(UAG) and ndhF-rlp32 for phylogenetic reconstruction of 51 species of Onobrychis. In all of our analyses, Eversmannia subspinosa, Corethrodendron scoparium, Greuteria membranacea and G. argyrea were chosen as outgroups. Phylogenetic analyses were performed by maximum parsimony, maximum likelihood and Bayesian methods. Our molecular data indicate that Onobrychis is monophyletic and composed of two main clades, each corresponding to the redefined subgenus Onobrychis (including sections Onobrychis and Hemicyclobrychis) and subgenus Sisyrosema (including sections Afghanicae, Laxiflorae, Heliobrychis, Hymenobrychis, Insignes, Lipskyanae and Litvinovianae), respectively. Sections Lipskyanae and Litvinovianae are newly established and described, representing distinct lineages within the genus. Onobrychis splendida, a species hitherto without a sectional position, along with some members of sect. Anthyllium were retrieved representatives of section Lipskyanae. Sections Afghanicae, Insignes, Heliobrychis and Hymenobrychis (with the inclusion of two species of section Anthyllium) are monophyletic. Sections Dendrobrychis and Lophobrychis are reduced to synonymy of section Onobrychis and Anthyllium to synonymy of section Hymenobrychis. A taxonomic treatment for the genus is presented. |
doi_str_mv | 10.1007/s00606-016-1343-1 |
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We sequenced the nuclear ribosomal DNA internal transcribed spacer (nrDNA ITS) and three chloroplast regions trnL-F, rpl32/rpl32-trnL(UAG) and ndhF-rlp32 for phylogenetic reconstruction of 51 species of Onobrychis. In all of our analyses, Eversmannia subspinosa, Corethrodendron scoparium, Greuteria membranacea and G. argyrea were chosen as outgroups. Phylogenetic analyses were performed by maximum parsimony, maximum likelihood and Bayesian methods. Our molecular data indicate that Onobrychis is monophyletic and composed of two main clades, each corresponding to the redefined subgenus Onobrychis (including sections Onobrychis and Hemicyclobrychis) and subgenus Sisyrosema (including sections Afghanicae, Laxiflorae, Heliobrychis, Hymenobrychis, Insignes, Lipskyanae and Litvinovianae), respectively. Sections Lipskyanae and Litvinovianae are newly established and described, representing distinct lineages within the genus. Onobrychis splendida, a species hitherto without a sectional position, along with some members of sect. Anthyllium were retrieved representatives of section Lipskyanae. Sections Afghanicae, Insignes, Heliobrychis and Hymenobrychis (with the inclusion of two species of section Anthyllium) are monophyletic. Sections Dendrobrychis and Lophobrychis are reduced to synonymy of section Onobrychis and Anthyllium to synonymy of section Hymenobrychis. A taxonomic treatment for the genus is presented.</description><identifier>ISSN: 0378-2697</identifier><identifier>EISSN: 1615-6110</identifier><identifier>EISSN: 2199-6881</identifier><identifier>DOI: 10.1007/s00606-016-1343-1</identifier><language>eng</language><publisher>Vienna: Springer-Verlag GmbH</publisher><subject>Bayesian analysis ; Biological taxonomies ; Biomedical and Life Sciences ; Calyx ; Chloroplasts ; Crystals ; Datasets ; Herbs ; Legumes ; Life Sciences ; Nucleotide sequence ; Onobrychis ; Original Article ; Phylogenetics ; Phylogeny ; Plant Anatomy/Development ; Plant Ecology ; Plant Sciences ; Plant Systematics/Taxonomy/Biogeography ; Plants ; Ribosomal DNA ; Spacer ; Species ; Synonymy ; Taxa</subject><ispartof>Plant systematics and evolution, 2016-12, Vol.302 (10), p.1445-1456</ispartof><rights>Springer-Verlag Berlin Heidelberg 2016</rights><rights>Springer-Verlag Wien 2016</rights><rights>Plant Systematics and Evolution is a copyright of Springer, (2016). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c338t-b30d4c407f5fb7404126e11ef59ce338920e089d53ca954c6b42fcdf4ec42cd83</citedby><cites>FETCH-LOGICAL-c338t-b30d4c407f5fb7404126e11ef59ce338920e089d53ca954c6b42fcdf4ec42cd83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/44853371$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/44853371$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,780,784,803,27924,27925,41488,42557,51319,58017,58250</link.rule.ids></links><search><creatorcontrib>Amirahmadi, Atefe</creatorcontrib><creatorcontrib>Kazempour-Osaloo, Shahrokh</creatorcontrib><creatorcontrib>Kaveh, Akram</creatorcontrib><creatorcontrib>Maassoumi, Ali A.</creatorcontrib><creatorcontrib>Naderi, Reza</creatorcontrib><title>The phylogeny and new classification of the genus Onobrychis (Fabaceae-Hedysareae): evidence from molecular data</title><title>Plant systematics and evolution</title><addtitle>Plant Syst Evol</addtitle><description>The present study was conducted to analyze the phylogenetic status of the genus Onobrychis and to evaluate the monophyly of its subgenera and sections and relationship among them. We sequenced the nuclear ribosomal DNA internal transcribed spacer (nrDNA ITS) and three chloroplast regions trnL-F, rpl32/rpl32-trnL(UAG) and ndhF-rlp32 for phylogenetic reconstruction of 51 species of Onobrychis. In all of our analyses, Eversmannia subspinosa, Corethrodendron scoparium, Greuteria membranacea and G. argyrea were chosen as outgroups. Phylogenetic analyses were performed by maximum parsimony, maximum likelihood and Bayesian methods. Our molecular data indicate that Onobrychis is monophyletic and composed of two main clades, each corresponding to the redefined subgenus Onobrychis (including sections Onobrychis and Hemicyclobrychis) and subgenus Sisyrosema (including sections Afghanicae, Laxiflorae, Heliobrychis, Hymenobrychis, Insignes, Lipskyanae and Litvinovianae), respectively. Sections Lipskyanae and Litvinovianae are newly established and described, representing distinct lineages within the genus. Onobrychis splendida, a species hitherto without a sectional position, along with some members of sect. Anthyllium were retrieved representatives of section Lipskyanae. Sections Afghanicae, Insignes, Heliobrychis and Hymenobrychis (with the inclusion of two species of section Anthyllium) are monophyletic. Sections Dendrobrychis and Lophobrychis are reduced to synonymy of section Onobrychis and Anthyllium to synonymy of section Hymenobrychis. A taxonomic treatment for the genus is presented.</description><subject>Bayesian analysis</subject><subject>Biological taxonomies</subject><subject>Biomedical and Life Sciences</subject><subject>Calyx</subject><subject>Chloroplasts</subject><subject>Crystals</subject><subject>Datasets</subject><subject>Herbs</subject><subject>Legumes</subject><subject>Life Sciences</subject><subject>Nucleotide sequence</subject><subject>Onobrychis</subject><subject>Original Article</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant Anatomy/Development</subject><subject>Plant Ecology</subject><subject>Plant Sciences</subject><subject>Plant Systematics/Taxonomy/Biogeography</subject><subject>Plants</subject><subject>Ribosomal DNA</subject><subject>Spacer</subject><subject>Species</subject><subject>Synonymy</subject><subject>Taxa</subject><issn>0378-2697</issn><issn>1615-6110</issn><issn>2199-6881</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kE1LxDAQhoMouK7-AA9CwIseopOPpq03EVeFhb3ouaTpxO3SbdakVfrv7VLRm5eZOTzvO_AQcs7hhgOktxFAg2bANeNSScYPyIxrnjDNORySGcg0Y0Ln6TE5iXEDwFOt0hnZva6R7tZD49-xHahpK9riF7WNibF2tTVd7VvqHe1GbkT6SFetL8Ng13WkVwtTGosG2TNWQzRhPK_vKH7WFbYWqQt-S7e-Qds3JtDKdOaUHDnTRDz72XPytnh8fXhmy9XTy8P9klkps46VEiplFaQucWWqQHGhkXN0SW5xJHIBCFleJdKaPFFWl0o4WzmFVglbZXJOLqfeXfAfPcau2Pg-tOPLQogkl0pk-Z7iE2WDjzGgK3ah3powFByKvdhiEluMYou92HHMiZgycWTbdwx_zf-FLqbQJnY-_H5RKkukTLn8BvLWhVw</recordid><startdate>20161201</startdate><enddate>20161201</enddate><creator>Amirahmadi, Atefe</creator><creator>Kazempour-Osaloo, Shahrokh</creator><creator>Kaveh, Akram</creator><creator>Maassoumi, Ali A.</creator><creator>Naderi, Reza</creator><general>Springer-Verlag GmbH</general><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope></search><sort><creationdate>20161201</creationdate><title>The phylogeny and new classification of the genus Onobrychis (Fabaceae-Hedysareae): evidence from molecular data</title><author>Amirahmadi, Atefe ; Kazempour-Osaloo, Shahrokh ; Kaveh, Akram ; Maassoumi, Ali A. ; Naderi, Reza</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c338t-b30d4c407f5fb7404126e11ef59ce338920e089d53ca954c6b42fcdf4ec42cd83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Bayesian analysis</topic><topic>Biological taxonomies</topic><topic>Biomedical and Life Sciences</topic><topic>Calyx</topic><topic>Chloroplasts</topic><topic>Crystals</topic><topic>Datasets</topic><topic>Herbs</topic><topic>Legumes</topic><topic>Life Sciences</topic><topic>Nucleotide sequence</topic><topic>Onobrychis</topic><topic>Original Article</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant Anatomy/Development</topic><topic>Plant Ecology</topic><topic>Plant Sciences</topic><topic>Plant Systematics/Taxonomy/Biogeography</topic><topic>Plants</topic><topic>Ribosomal DNA</topic><topic>Spacer</topic><topic>Species</topic><topic>Synonymy</topic><topic>Taxa</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Amirahmadi, Atefe</creatorcontrib><creatorcontrib>Kazempour-Osaloo, Shahrokh</creatorcontrib><creatorcontrib>Kaveh, Akram</creatorcontrib><creatorcontrib>Maassoumi, Ali A.</creatorcontrib><creatorcontrib>Naderi, Reza</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><jtitle>Plant systematics and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Amirahmadi, Atefe</au><au>Kazempour-Osaloo, Shahrokh</au><au>Kaveh, Akram</au><au>Maassoumi, Ali A.</au><au>Naderi, Reza</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The phylogeny and new classification of the genus Onobrychis (Fabaceae-Hedysareae): evidence from molecular data</atitle><jtitle>Plant systematics and evolution</jtitle><stitle>Plant Syst Evol</stitle><date>2016-12-01</date><risdate>2016</risdate><volume>302</volume><issue>10</issue><spage>1445</spage><epage>1456</epage><pages>1445-1456</pages><issn>0378-2697</issn><eissn>1615-6110</eissn><eissn>2199-6881</eissn><abstract>The present study was conducted to analyze the phylogenetic status of the genus Onobrychis and to evaluate the monophyly of its subgenera and sections and relationship among them. We sequenced the nuclear ribosomal DNA internal transcribed spacer (nrDNA ITS) and three chloroplast regions trnL-F, rpl32/rpl32-trnL(UAG) and ndhF-rlp32 for phylogenetic reconstruction of 51 species of Onobrychis. In all of our analyses, Eversmannia subspinosa, Corethrodendron scoparium, Greuteria membranacea and G. argyrea were chosen as outgroups. Phylogenetic analyses were performed by maximum parsimony, maximum likelihood and Bayesian methods. Our molecular data indicate that Onobrychis is monophyletic and composed of two main clades, each corresponding to the redefined subgenus Onobrychis (including sections Onobrychis and Hemicyclobrychis) and subgenus Sisyrosema (including sections Afghanicae, Laxiflorae, Heliobrychis, Hymenobrychis, Insignes, Lipskyanae and Litvinovianae), respectively. Sections Lipskyanae and Litvinovianae are newly established and described, representing distinct lineages within the genus. Onobrychis splendida, a species hitherto without a sectional position, along with some members of sect. Anthyllium were retrieved representatives of section Lipskyanae. Sections Afghanicae, Insignes, Heliobrychis and Hymenobrychis (with the inclusion of two species of section Anthyllium) are monophyletic. Sections Dendrobrychis and Lophobrychis are reduced to synonymy of section Onobrychis and Anthyllium to synonymy of section Hymenobrychis. A taxonomic treatment for the genus is presented.</abstract><cop>Vienna</cop><pub>Springer-Verlag GmbH</pub><doi>10.1007/s00606-016-1343-1</doi><tpages>12</tpages></addata></record> |
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subjects | Bayesian analysis Biological taxonomies Biomedical and Life Sciences Calyx Chloroplasts Crystals Datasets Herbs Legumes Life Sciences Nucleotide sequence Onobrychis Original Article Phylogenetics Phylogeny Plant Anatomy/Development Plant Ecology Plant Sciences Plant Systematics/Taxonomy/Biogeography Plants Ribosomal DNA Spacer Species Synonymy Taxa |
title | The phylogeny and new classification of the genus Onobrychis (Fabaceae-Hedysareae): evidence from molecular data |
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