Probing conserved amino acids in phospholipase D (Brassica oleracea var. capitata) for their importance in hydrolysis and transphosphatidylation activity
In addition to hydrolysis of glycerophospholipids, phospholipases D (PLDs) catalyze the head group exchange. The molecular basis of this transphosphatidylation potential, which strongly varies for PLDs from different sources, is unknown hitherto. Recently, the genes of two PLD isoenzymes from white...
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Veröffentlicht in: | Protein engineering, design and selection design and selection, 2006-10, Vol.19 (10), p.443-452 |
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description | In addition to hydrolysis of glycerophospholipids, phospholipases D (PLDs) catalyze the head group exchange. The molecular basis of this transphosphatidylation potential, which strongly varies for PLDs from different sources, is unknown hitherto. Recently, the genes of two PLD isoenzymes from white cabbage have been sequenced and expressed in Escherchia coli, yielding the basis for mutational studies. In the present paper, three sequence characteristics of the isoenzyme (PLD2) that corresponds to the often used enzyme isolated from cabbage leaves have been probed for their importance in hydrolysis as well as transphosphatidylation activities: (i) the two HKD motifs, (ii) the C terminus and (iii) the eight cysteine residues. All these regions or amino acids are highly conserved in α-type plant PLDs. Based on multiple alignments, predictions of secondary structure and comparisons of hydrophobicity profiles, 35 enzyme variants were created and assayed. All positions tested proved to be very sensitive towards amino acid exchanges with respect to hydrolytic activity in the absence of glycerol as well as to the ratio of hydrolytic and transphosphatidylation activities in the presence of glycerol. A significant increase of total activity and transphosphatidylation activity could be obtained by the substitutions C310S and C625S. |
doi_str_mv | 10.1093/protein/gzl028 |
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The molecular basis of this transphosphatidylation potential, which strongly varies for PLDs from different sources, is unknown hitherto. Recently, the genes of two PLD isoenzymes from white cabbage have been sequenced and expressed in Escherchia coli, yielding the basis for mutational studies. In the present paper, three sequence characteristics of the isoenzyme (PLD2) that corresponds to the often used enzyme isolated from cabbage leaves have been probed for their importance in hydrolysis as well as transphosphatidylation activities: (i) the two HKD motifs, (ii) the C terminus and (iii) the eight cysteine residues. All these regions or amino acids are highly conserved in α-type plant PLDs. Based on multiple alignments, predictions of secondary structure and comparisons of hydrophobicity profiles, 35 enzyme variants were created and assayed. All positions tested proved to be very sensitive towards amino acid exchanges with respect to hydrolytic activity in the absence of glycerol as well as to the ratio of hydrolytic and transphosphatidylation activities in the presence of glycerol. A significant increase of total activity and transphosphatidylation activity could be obtained by the substitutions C310S and C625S.</description><identifier>ISSN: 1741-0126</identifier><identifier>EISSN: 1741-0134</identifier><identifier>DOI: 10.1093/protein/gzl028</identifier><identifier>PMID: 16845127</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Amino Acid Sequence ; Brassica - enzymology ; Brassica - genetics ; Brassica oleracea var. capitata ; Cloning, Molecular ; Computational Biology ; E.coli ; Escherichia coli - metabolism ; Hydrolysis ; Models, Chemical ; Molecular Sequence Data ; Mutagenesis ; Mutation ; phospholipase D ; Phospholipase D - chemistry ; Phospholipase D - genetics ; Plant Proteins - chemistry ; Protein Structure, Tertiary ; Sequence Homology, Amino Acid ; Substrate Specificity ; transphosphatidylation</subject><ispartof>Protein engineering, design and selection, 2006-10, Vol.19 (10), p.443-452</ispartof><rights>The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oxfordjournals.org 2006</rights><rights>Copyright Oxford Publishing Limited(England) Oct 2006</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c392t-6d3ea69a8db6f1261f7d3a74f2ea0447d06b6cad7d57170cc800270c09b90933</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,1578,27903,27904</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16845127$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lerchner, Alexandra</creatorcontrib><creatorcontrib>Mansfeld, Johanna</creatorcontrib><creatorcontrib>Kuppe, Konstantin</creatorcontrib><creatorcontrib>Ulbrich-Hofmann, Renate</creatorcontrib><title>Probing conserved amino acids in phospholipase D (Brassica oleracea var. capitata) for their importance in hydrolysis and transphosphatidylation activity</title><title>Protein engineering, design and selection</title><addtitle>Protein Eng Des Sel</addtitle><description>In addition to hydrolysis of glycerophospholipids, phospholipases D (PLDs) catalyze the head group exchange. The molecular basis of this transphosphatidylation potential, which strongly varies for PLDs from different sources, is unknown hitherto. Recently, the genes of two PLD isoenzymes from white cabbage have been sequenced and expressed in Escherchia coli, yielding the basis for mutational studies. In the present paper, three sequence characteristics of the isoenzyme (PLD2) that corresponds to the often used enzyme isolated from cabbage leaves have been probed for their importance in hydrolysis as well as transphosphatidylation activities: (i) the two HKD motifs, (ii) the C terminus and (iii) the eight cysteine residues. All these regions or amino acids are highly conserved in α-type plant PLDs. Based on multiple alignments, predictions of secondary structure and comparisons of hydrophobicity profiles, 35 enzyme variants were created and assayed. All positions tested proved to be very sensitive towards amino acid exchanges with respect to hydrolytic activity in the absence of glycerol as well as to the ratio of hydrolytic and transphosphatidylation activities in the presence of glycerol. A significant increase of total activity and transphosphatidylation activity could be obtained by the substitutions C310S and C625S.</description><subject>Amino Acid Sequence</subject><subject>Brassica - enzymology</subject><subject>Brassica - genetics</subject><subject>Brassica oleracea var. capitata</subject><subject>Cloning, Molecular</subject><subject>Computational Biology</subject><subject>E.coli</subject><subject>Escherichia coli - metabolism</subject><subject>Hydrolysis</subject><subject>Models, Chemical</subject><subject>Molecular Sequence Data</subject><subject>Mutagenesis</subject><subject>Mutation</subject><subject>phospholipase D</subject><subject>Phospholipase D - chemistry</subject><subject>Phospholipase D - genetics</subject><subject>Plant Proteins - chemistry</subject><subject>Protein Structure, Tertiary</subject><subject>Sequence Homology, Amino Acid</subject><subject>Substrate Specificity</subject><subject>transphosphatidylation</subject><issn>1741-0126</issn><issn>1741-0134</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkT1vFDEQhi0EIh_QUiKLihR7sffD3i0hBAI6CYoIUBpr1vbmHPbsZew7sfwT_i2O9hRKCs9M8fgdzfsS8oKzFWdddT5hSNb589vfIyvbR-SYy5oXjFf144e5FEfkJMY7xkohOX9Kjrho64aX8pj8-YKhd_6W6uCjxb01FLbOBwramUidp9MmxPxGN0G09B19_RYhRqeBhtEiaAt0D7iiGiaXIMEZHQLStLEOqdtOARN4be-VNrPBMM7RRQre0ITg46IOyZl5zDX4vDi5vUvzM_JkgDHa54d-Sq7fX15fXBXrzx8-XrxZF7rqylQIU1kQHbSmF0M-lQ_SVCDrobTA6loaJnqhwUjTSC6Z1m22IXfW9V02sDolrxbZ7OTPnY1J3YUd-rxRlWVTd1K0PEOrBdIYYkQ7qAndFnBWnKn7HNQhB7XkkD-8PKju-q01__CD8Rk4W4Cwm_4vViysi8n-eqABfyghK9moq-83qll_bepP326UqP4CNtGnjg</recordid><startdate>20061001</startdate><enddate>20061001</enddate><creator>Lerchner, Alexandra</creator><creator>Mansfeld, Johanna</creator><creator>Kuppe, Konstantin</creator><creator>Ulbrich-Hofmann, Renate</creator><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7QP</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope></search><sort><creationdate>20061001</creationdate><title>Probing conserved amino acids in phospholipase D (Brassica oleracea var. capitata) for their importance in hydrolysis and transphosphatidylation activity</title><author>Lerchner, Alexandra ; Mansfeld, Johanna ; Kuppe, Konstantin ; Ulbrich-Hofmann, Renate</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c392t-6d3ea69a8db6f1261f7d3a74f2ea0447d06b6cad7d57170cc800270c09b90933</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>Amino Acid Sequence</topic><topic>Brassica - enzymology</topic><topic>Brassica - genetics</topic><topic>Brassica oleracea var. capitata</topic><topic>Cloning, Molecular</topic><topic>Computational Biology</topic><topic>E.coli</topic><topic>Escherichia coli - metabolism</topic><topic>Hydrolysis</topic><topic>Models, Chemical</topic><topic>Molecular Sequence Data</topic><topic>Mutagenesis</topic><topic>Mutation</topic><topic>phospholipase D</topic><topic>Phospholipase D - chemistry</topic><topic>Phospholipase D - genetics</topic><topic>Plant Proteins - chemistry</topic><topic>Protein Structure, Tertiary</topic><topic>Sequence Homology, Amino Acid</topic><topic>Substrate Specificity</topic><topic>transphosphatidylation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lerchner, Alexandra</creatorcontrib><creatorcontrib>Mansfeld, Johanna</creatorcontrib><creatorcontrib>Kuppe, Konstantin</creatorcontrib><creatorcontrib>Ulbrich-Hofmann, Renate</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Protein engineering, design and selection</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lerchner, Alexandra</au><au>Mansfeld, Johanna</au><au>Kuppe, Konstantin</au><au>Ulbrich-Hofmann, Renate</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Probing conserved amino acids in phospholipase D (Brassica oleracea var. capitata) for their importance in hydrolysis and transphosphatidylation activity</atitle><jtitle>Protein engineering, design and selection</jtitle><addtitle>Protein Eng Des Sel</addtitle><date>2006-10-01</date><risdate>2006</risdate><volume>19</volume><issue>10</issue><spage>443</spage><epage>452</epage><pages>443-452</pages><issn>1741-0126</issn><eissn>1741-0134</eissn><abstract>In addition to hydrolysis of glycerophospholipids, phospholipases D (PLDs) catalyze the head group exchange. The molecular basis of this transphosphatidylation potential, which strongly varies for PLDs from different sources, is unknown hitherto. Recently, the genes of two PLD isoenzymes from white cabbage have been sequenced and expressed in Escherchia coli, yielding the basis for mutational studies. In the present paper, three sequence characteristics of the isoenzyme (PLD2) that corresponds to the often used enzyme isolated from cabbage leaves have been probed for their importance in hydrolysis as well as transphosphatidylation activities: (i) the two HKD motifs, (ii) the C terminus and (iii) the eight cysteine residues. All these regions or amino acids are highly conserved in α-type plant PLDs. Based on multiple alignments, predictions of secondary structure and comparisons of hydrophobicity profiles, 35 enzyme variants were created and assayed. All positions tested proved to be very sensitive towards amino acid exchanges with respect to hydrolytic activity in the absence of glycerol as well as to the ratio of hydrolytic and transphosphatidylation activities in the presence of glycerol. A significant increase of total activity and transphosphatidylation activity could be obtained by the substitutions C310S and C625S.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>16845127</pmid><doi>10.1093/protein/gzl028</doi><tpages>10</tpages></addata></record> |
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subjects | Amino Acid Sequence Brassica - enzymology Brassica - genetics Brassica oleracea var. capitata Cloning, Molecular Computational Biology E.coli Escherichia coli - metabolism Hydrolysis Models, Chemical Molecular Sequence Data Mutagenesis Mutation phospholipase D Phospholipase D - chemistry Phospholipase D - genetics Plant Proteins - chemistry Protein Structure, Tertiary Sequence Homology, Amino Acid Substrate Specificity transphosphatidylation |
title | Probing conserved amino acids in phospholipase D (Brassica oleracea var. capitata) for their importance in hydrolysis and transphosphatidylation activity |
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